4mt5: Sequences

PDBeMotif: 4mt5

		Sequences				3D motifs				Ligand environment				Ligand bonds

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Classification:	protein binding \| release date: Thu, Sep 19, 2013
Title:	crystal structure of mub-rv
Authors:	A.M.HEMMINGS, N.JUGE, S.ETZOLD
Method:	X-RAY DIFFRACTION (resolution: 2.60Å)

PDBe Citation

Ligand bond colours:

covalent

ionic

hydrogen

electrostatic

van-der-waals

plane-atom

plane-plane

undefined

- Click here to show 5Å bonds

Chains A,B sequence:
MQTAYVKYVDDTTGETLRQDDLHGYTDETIPYSTAEGIKKYEGDGYVLVSDGFKPGTKFGVGTPTYEVHFKHGMTHTDAT
DKNAEQKTVTETIHYVDENNQTVQPDSTTAVTFKRGYTTDNVTGKVVSYDPWTVDGNQADSKTFAAVPSPAVEGYTPNHQ
QINEFTVTPDSKDIVKTVVYVGDP

Residue colours: hydrophilic hydrophobic intermediate

Assembly 1

View the assembly/model: (

)

Motif search

chain:

Sequence numbers:

Using:	φ/ψ residues code secondary structures
	coordinates of: Cαs Side-chain

View the fragment:

chain A : MUCUS BINDING PROTEINN member of: PFAM:PF06458, UniProt:F8KCE4
`sec str:`	`...eeeeeeeee.....eeeeeeeee.........hhhhhhhhhh..eeeeee.............eeeeeeee.eeee.......eeeeeeeeeeee.......eeeeeeeeeeee.eeee.....eeee...ee..ee...eee..ee......eee...ee..eee......eeeeeeeee..`
`sequence :`	`..MQTAYVKYVDDTTGETLRQDDLHGYTDETIPYSTAEGIKKYEGDGYVLVSDGFKPGTKFGVGTPTYEVHFKHGMTHTDATDKNAEQKTVTETIHYVDENNQTVQPDSTTAVTFKRGYTTDNVTGKVVSYDPWTVDGNQADSKTFAAVPSPAVEGYTPNHQQINEFTVTPDSKDIVKTVVYVGDP`
`seq num:`	`..0 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180`
`ASN_GLYCOSYLATION`	`.. \|\| \|\| \| \| \| \| \|\| \|\| \| \|\| \|\|\| \| \|\| \|\| \| \| \| \| \|\|\|\|\| \|\| \| \| \|^* \| \| \|^*\| \| \| \| \|\|`
`PKC_PHOSPHO_SITE`	`.. \|\| \|^ \| \| \| \|\| \|\| \| \|\| \|\|\| \| \|\| \|\| \| \| \| \| ^\|\| \|\| \| \| \| \| ^ \| \|^ \| \| \| \|\|`
`CK2_PHOSPHO_SITE`	`.. ^* \| \| \| \| \|^* \| \|\| \|\|\| \| \|\| \|\| \| \| ^* \| \|\| \|^* \| \| \| \| \|\| \| \| \| \| \|\|`
`TYR_PHOSPHO_SITE`	`.. \| \| *****^ \| \| \|\| \| ***^ \| \|\| \|\| \| \| \| \| \|\| ******^ \| \| \| \|\| \| \| \| \| \|\|`
`MYRISTYL`	`.. \| \| \| \| \| \|\| \| \|\| \|\|\| \| \|\| ^*** ^*** \| \|\| \| \| \| \|\| \| \| \| \| \|\|`
`asxturn`	`.. \| \| \| \| \| \|\| \| \|\| \|\|\| \| \|\| \| \| *\| \| \| *\| \| \| \| \| \|\|`
`betaturn`	`.. \| \| ** \| \|\| \| *\| \| \| \| \| \| \| \| \| \| ** \| \|\|`
`gammaturn`	`.. \| \| \| \| ***\| \| \| \| \| \| \|\| \| \| \| \| \| \| \| \| \| \| \| \|\|`
`nest`	`.. * \| \| \| \| \| * \| \|\| \| \| \| \| * * \| \| \| \|\|`
`niche`	`.. \| \| ** \| \| \| \| *** *** \| \| **`
`schellmannloop`	`.. \| \| \| \| ****** \| \| \| \|`
`stturn`	`.. * * * *`

Assembly 2

View the assembly/model: (

)

Motif search

chain:

Sequence numbers:

Using:	φ/ψ residues code secondary structures
	coordinates of: Cαs Side-chain

View the fragment:

chain B : MUCUS BINDING PROTEINN member of: PFAM:PF06458, UniProt:F8KCE4
`sec str:`	`...eeeeeeeee.....eeeeeeeee.........hhhhhhhhhh..eeeeee.............eeeeeeee.eeee.......eeeeeeeeeeeee....eeeeeeeeeeeeee.eeee.....eeee...ee.......eee..ee......eee...ee..eee......eeeeeeeee..`
`sequence :`	`..MQTAYVKYVDDTTGETLRQDDLHGYTDETIPYSTAEGIKKYEGDGYVLVSDGFKPGTKFGVGTPTYEVHFKHGMTHTDATDKNAEQKTVTETIHYVDENNQTVQPDSTTAVTFKRGYTTDNVTGKVVSYDPWTVDGNQADSKTFAAVPSPAVEGYTPNHQQINEFTVTPDSKDIVKTVVYVGDP`
`seq num:`	`..0 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180`
`ASN_GLYCOSYLATION`	`.. \| \|\| \|\|\|\| \| \| \| \|\| \| \| \| \|\| \|\| \| \| \| \| \|\|\| \| \|\| \| \| \|^* \| \| \|^*\| \| \| \| \|`
`PKC_PHOSPHO_SITE`	`.. \| \|\| \|^ \| \| \| \|\| \| \| \| \|\| \|\| \| \| \| \| ^ \| \|\| \| \| \| \| ^ \| \|^ \| \| \| \|`
`CK2_PHOSPHO_SITE`	`.. \| ^* \|\| \| \| ^* \| \| \| \|\| \|\| \| \| ^* \| \| \|^* \| \| \| \| \|\| \| \| \| \| \|`
`TYR_PHOSPHO_SITE`	`.. \| \|\| \| \|*****^ \| \| \| ***^ \| \|\| \|\| \| \| \| \| \| ******^ \| \| \| \|\| \| \| \| \| \|`
`MYRISTYL`	`.. \| \|\| \| \|\| \| \| \| \| \| \|\| ^*** ^*** \| \| \| \| \| \|\| \| \| \| \| \|`
`asxturn`	`.. *\| \| \|\| \| \| \| \| \| \| \| \| \| \| \| **\| \| \| \| \| \|`
`betabulge`	`.. \| \| \| ** \| \| \| \| \| \|\| \| \| \| \| \| \| \| \| \| \| \| \|`
`betabulgeloop`	`.. ****** \| \| \| \| \| \|\| \| \| \| \| \| \| \| \| \| \| \| \|`
`betaturn`	`.. \| \| \| \| \| \| \| \|** \| \| \| \| \| \| \| **`
`nest`	`.. * \| \| \| \| \| \|\| \| \| \| \| * *** \| \| \| \|`
`niche`	`.. ** \| \| *** *** \| \| **`
`stturn`	`.. * *`

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