triangle PDBeMotif: 4hae  
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coner
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coner
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Classification protein binding    | release date: Wed, Sep 26, 2012
Title crystal structure of the cdyl2-chromodomain
Authors A.DONG, A.M.EDWARDS, C.BOUNTRA, C.H.ARROWS, C.XU, H.WU, J.MIN, L.DOMBROVSKI, S.QIN, STRUCTURAL GENOMICS CONSORTIUM (SGC), W.TEMPEL
Method X-RAY DIFFRACTION (resolution: 2.00Å)
PDBe Citation   
Small molecules:    search UNX UNX binding statistics UNX   search SO4 SO4 binding statistics SO4
Ligand bond colours:   *  covalent   *  ionic   *  hydrogen   *  electrostatic   *  van-der-waals   *  plane-atom   *  plane-plane   *  undefined  - Click here to show 5Å bonds
Chain A sequence:
MHHHHHHSSGRENLYFQGASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHMSKD
K
Residue colours:  hydrophilic   hydrophobic   intermediate 
Assembly 1     View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain A : CHROMODOMAIN Y-LIKE PROTEIN 2
member of: CATH:search2.40.50.40GENE3D:searchG3DSA_2.40.50.40PFAM:searchPF00385PROSITE PATTERNS:searchPS00598, PROSITE PROFILES:searchPS50013, SMART:searchSM00298SUPERFAMILY:searchSSF54160UniProt:searchQ8N8U2
JMol viewer RasMol script viewer  UNX 108A  ..                                                                  
JMol viewer RasMol script viewer  UNX 107A  ..                                                                  
JMol viewer RasMol script viewer  UNX 105A  ..                                                                  
JMol viewer RasMol script viewer  UNX 104A  ..                                                                  
JMol viewer RasMol script viewer  UNX 103A  ..                                                                  
JMol viewer RasMol script viewer  UNX 102A  ..                                                                  
JMol viewer RasMol script viewer  SO4 101A  ..                *                *                                
sec str:  ....eeee.....eeeeeeeeeeee.....eeeeeee...hhhhheeee...eee.............
sequence :  ..ENLYFQGASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHM
seq num:  ..-5        5         15        25        35        45        55    
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..|     | |||            | |||  |   |  | |  |    |  |           |   
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..*     | |||            | |||  |   |  | ^***    |  |           |   
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..      | |||            | |||  |   |  | |  |    |  |           ^***
search RasMol script viewer Motif-ligand binding stats  CHROMO_1 ..      | |||            | |||  *********************               
search RasMol script viewer Motif-ligand binding stats  betaturn ..      ****|            ****|      **** |  |    |  |               
search RasMol script viewer Motif-ligand binding stats  nest ..        ***              ***      |  | |  |    |  |               
search RasMol script viewer Motif-ligand binding stats  niche ..                                  **** ****    ****               

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