triangle PDBeMotif: 3thy  
  coner Sequences coner   coner 3D motifs coner   coner Ligand environment coner   coner Ligand bonds coner
   
coner
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coner
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Classification dna binding protein/dna    | release date: Fri, Aug 19, 2011
Title human mutsbeta complexed with an idl of 2 bases (loop2) and
Authors W.YANG
Method X-RAY DIFFRACTION (resolution: 2.89Å)
PDBe Citation   
Small molecules:    search ADP ADP binding statistics ADP
Ligand bond colours:   *  covalent   *  ionic   *  hydrogen   *  electrostatic   *  van-der-waals   *  plane-atom   *  plane-plane   *  undefined  - Click here to show 5Å bonds
Chain A sequence:
MAVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVL
SKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAYKASPGNLSQFEDILFGNNDMSASIGVVGVKMSAVDGQRQ
VGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIIQRGGILITERKKADFSTKDIYQD
LNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKLDIAAVRALNLFQGSVEDT
TGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAAN
LQDCYRLYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSE
LREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLN
EEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILKASRHA
CVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLK
GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNL
HVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEFQYIGESQGYDIMEPAAKKCYLEREQG
EKIIQEFLSKVKQMPFTEMSEENITIKLKQLKAEVIAKNNSFVNEIISRIKVTT
Chain B sequence:
GPKSANKRSKSIYTPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHVRR
LVAKGYKVGVVKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMTDTSTSYLLCISENKE
NVRDKKKGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPSALSEQTEALIHRATSVSVQDDRIRVE
RMDNIYFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSKPENFKQLSSKMEFMT
INGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLR
KLPDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAIIPAVNSHIQSDLLRTVILEIPELLSPVEHYLKILNEQAAKV
GDKTELFKDLSDFPLIKKRKDEIQGVIDEIRMHLQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKA
VSRFHSPFIVENYRHLNQLREQLVLDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEERK
IVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIF
TRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE
LEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGL
INTKRKRLKYFAKLWTMHNAQDLQKWTEEFNMEETQTS
Residue colours:  hydrophilic   hydrophobic   intermediate 
Assembly 1     View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain A : DNA MISMATCH REPAIR PROTEIN MSH2
member of: GENE3D:searchG3DSA_1.10.1420.10/searchG3DSA_3.40.50.300PANTHER:searchPTHR11361/searchPTHR11361_SF35PFAM:searchPF00488/searchPF01624/searchPF05188/searchPF05190/searchPF05192PIRSF:searchPIRSF005813PROSITE PATTERNS:searchPS00486, SMART:searchSM00533/searchSM00534SUPERFAMILY:searchSSF48334/searchSSF52540UniProt:searchP43246
JMol viewer RasMol script viewer  ADP 935A  ..                                                                                               ..                               ..                                                                                                                                                                             ..ADP ..                                                                                                                                                                                                                                                                                                                                     ****                  ********                                    ..ADP ..                                                                                            *                                         ..                                                           
sec str:  ...hhhhhhhhhhhhh......eeeeee...eeeeehhhhhhhhhhh.......eee.hhhhheeeeeeeehhhhhhhhhhhhhh...eeeeeee.........eeeeeee.......hhhhhh............eeeee.......eeeeeeee....eeeeeeee....hhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh.eeeeehhhhhh..hhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee.hhhhh.eehhhhhhhh......... .....hhhhhh...hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeee...eeeee.hhhhhhhhhh....eeeee....eeeehhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh........eee......eeeeee...............eeeee......eeeee.....hhhhhhhhhhhhhhhhhh.......eeeee...eeeee..... ...hhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhh....eeeeeeeee..eeeeeeeeee......hhhhhhhhh..hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.
sequence :  ..SAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRA..SKENDWYLAYKASPGNLSQFEDILFGNNDMS..SIGVVGVKMSAVDGQRQVGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIIQRGGILITERKKADFSTKDIYQDLNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKLDIAAVRALNLFQGS... ..SQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVG... ..STFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEFQY..KCYLEREQGEKIIQEFLSKVKQMPFTEMSEENITIKLKQLKAEVIAKNNSFVNEIISRI
seq num:  ..13        23        33        43        53        63        73        83        93        103  ..112       122       132        ..144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304          ... ..323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703        ... ..723       733       743       753       763       773       783       793       803       813       823       833       843       853 ..872       882       892       902       912       922      
search RasMol script viewer Motif-ligand binding stats  ASN_GLYCOSYLATION ..|  |     || ||   |  | |   | |                | ||| |                |   |          | |         .. |    | ||  |  ^*** |          ..     |   || |          |  | |        | |||| |             ||||||||       || |||  |||  |  | ||     |  ||  |     |  |          |  ||   |||| ||  || |  |  ||  |   |   |  ||||| |..PS00001..        | | |  || ||  ||   | |         |  ||        |  |  |  |           | | | |       |  |          ||||||   |  ||      |  ||    | || ||  |  | |         ^***      |  ||           |||   |        | |     | ||  |    |^*** |    |    |||  | ||| ||^*** |  || |  || ^*** |     |  |                              ||||              | |                    || ||||| |   |     |  | | | |     |  |      |..PS00001..     |   | |   | |  |       | |||  || |    |       | |     | |  | |  | |  |        |  |    | |          |    | | |              | || |..                  |  |      |  ^***|       |  |^*** | |  | 
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..|  |     || ||   |  ^**   | |                | ||| |                |   |          | |         .. |    | ||  |  | |  |          ..     |   || |          |  | |        | |||| |             ||||||||       || |||  ^**  |  ^**|     |  ||  |     |  |          |  ||   |||| ||  || |  |  ||  |   |   |  ||||| |..PS00005..        | | |  || ||  ||   | |         |  ||        |  |  |  |           | | | |       |  |          ||||||   |  ||      |  ||    | || ||  |  | |                   |  ||           |||   |        | |     ^**|  |    | ||  |    |    |||  | ||| ||  |  |  || |  ||   |  |     |  |                              ||||              | |                    || ||||| |   |     |  | | | |     |  |      |..PS00005..     |   | |   | |  |       | |||  || |    |       | |     | |  | |  | |  |        |  |    | |          |    | | |              | || |..                  |  |      |  ||^**       |  | |   | |  | 
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..^***     || ||   |  |     | |                | ||| |                |   |          | |         .. |    | ||  |  | ^***          ..     |   ^***          |  | |        | ||^***             ||||^***       || |||   |   |  ^***     |  ||  |     |  |          |  ||   |||| ||  || |  ^***|  |   |   |  ||||| ^..PS00006..        | | |  || ||  ||   | |         |  ||        ^***  |  |           | | | |       |  |          ||||||   |  ||      |  ||    | |^***  |  | |                   |  ||           |||   |        | |     ^***  |    | |^***    |    |||  ^***| ||  ^***  || |  ||   |  |     ^***                              ||||              | |                    || ||||| |   |     |  | | | |     ^***      |..PS00006..     |   | |   | |  |       | ||^***| |    |       | |     | |  | |  | |  |        ^***    | |          |    | | |              | || |..                  |  |      |  ||          |  | |   | |  | 
search RasMol script viewer Motif-ligand binding stats  TYR_PHOSPHO_SITE ..         || ||   |  |     | |                | ||| |                |   |          | |         ..******^ ||  |  |               ..     |    |            |  | |        | ||||               |||| ||        || |||   |   |  |        |  ||  |     |  |          |  ||   |||| ||  || |      |  |   |   |  |||||  ..PS00007..        | | |  || ||  ||   | |         |  ||              |  |           | | | |       |  |          ||||||   |  ||      |  ||    | || |   |  | |                   |  ||           |||   |        | |        |  |    | |        |    |||  | | | ||     |  || |  ||   |  |                                       ||||              | |                    || ||||| |   |     |  | | | |               |..PS00007..     |   | |   | |  |       | ||    | |    |       | |     | |  | |  | |  |                | |          |    | | |              | || |..                  |  |      |  ||          |  | |   | |  | 
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..         || ||   |  |     | |                | ||| |                |   |          | |         ..**      ||  |  |               ..     ^*****            |  | |        | ||||               |^*****        || |^*****   |  |        |  ||  |     |  |          |  ||   |||| ||  || |      |  |   |   |  |||||  ..PS00008..        | | |  || ||  ||   | |         |  ||              |  |           | | | |       |  |          ||||||   |  ||      |  ||    | || |   |  | |                   |  ||           |^*****        | |        |  |    | |        ^*****||  | | | ||     |  || |  ||   |  |                                       ||||              | |                    || |^*****   |     |  | | | |               ^..PS00008..     |   | |   | |  |       | ||    | ^*****       | |     | |  | |  | |  |                | |          ^***** | |              | || |..                  |  |      |  ||          |  | |   | |  | 
search RasMol script viewer Motif-ligand binding stats  AMIDATION ..         || ||   |  |     | |                | ||| |                |   |          | |         ..        ||  |  |               ..                       |  | |        | ||||               | || |         || |||       |  |        |  |^***     |  |          |  ||   |||| ||  || |      |  |   |   |  |||||  ..PS00009..        | | |  || ||  ||   | |         |  ||              |  |           | | | |       |  |          ||||||   |  ||      |  ||    | || |   |  | |                   |  ||           | |            | |        |  |    | |             |||  | | | ||     |  || |  ||   |  |                                       ||||              | |                    || ||||| |   |     |  | | | |                ..PS00009..     |   | |   | |  |       | ||    |              | |     | |  | |  | |  |                | |                 | |              | || |..                  |  |      |  ||          |  | |   | |  | 
search RasMol script viewer Motif-ligand binding stats  RGD ..         || ||   |  |     ***                | ||| |                |   |          | |         ..        ||  |  |               ..                       |  | |        | ||||               | || |         || |||       |  |        |  |         |  |          |  ||   |||| ||  || |      |  |   |   |  |||||  ..PS00016..        | | |  || ||  ||   | |         |  ||              |  |           | | | |       |  |          ||||||   |  ||      |  ||    | || |   |  | |                   |  ||           | |            | |        |  |    | |             |||  | | | ||     |  || |  ||   |  |                                       ||||              | |                    || ||||| |   |     |  | | | |                ..PS00016..     |   | |   | |  |       | ||    |              | |     | |  | |  | |  |                | |                 | |              | || |..                  |  |      |  ||          |  | |   | |  | 
search RasMol script viewer Motif-ligand binding stats  ATP_GTP_A ..         || ||   |  |                        | ||| |                |   |          | |         ..        ||  |  |               ..                       |  | |        | ||||               | || |         || |||       |  |        |  |         |  |          |  ||   |||| ||  || |      |  |   |   |  |||||  ..PS00017..        | | |  || ||  ||   | |         |  ||              |  |           | | | |       |  |          ||||||   |  ||      |  ||    | || |   |  | |                   |  ||           | |            | |        |  |    | |             |||  | | | ||     |  || |  ||   |  |                                       ||||              | |                    ******** |   |     |  | | | |                ..PS00017..     |   | |   | |  |       | ||    |              | |     | |  | |  | |  |                | |                 | |              | || |..                  |  |      |  ||          |  | |   | |  | 
search RasMol script viewer Motif-ligand binding stats  DNA_MISMATCH_REPAIR_2 ..         || ||   |  |                        | ||| |                |   |          | |         ..        ||  |  |               ..                       |  | |        | ||||               | || |         || |||       |  |        |  |         |  |          |  ||   |||| ||  || |      |  |   |   |  |||||  ..PS00486..        | | |  || ||  ||   | |         |  ||              |  |           | | | |       |  |          ||||||   |  ||      |  ||    | || |   |  | |                   |  ||           | |            | |        |  |    | |             |||  | | | ||     |  || |  ||   |  |                                       ||||              | |                     | ||||| |   |     |  | | | |                ..PS00486..     |   | |   | |  *****************              | |     | |  | |  | |  |                | |                 | |              | || |..                  |  |      |  ||          |  | |   | |  | 
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..         *****   |  |                        | ||| |                |   |          | |         ..        ||  |  |               ..                       |  | |        | ||||               | || |         || |||       |  |        |  |         |  |          *****   |||| ||  || |      |  |   |   |  |||||  ..alphabetamotif..        | | |  *********   | |         *****              |  |           | | | |       |  |          ||||||   *****      *****    | || |   |  | |                   *****           | |            | |        |  |    | |             |||  | | | ||     ***** *****   |  |                                       ||||              | |                     | ||||| |   |     |  | | | |                ..alphabetamotif..     |   | |   | |  |       | ||                   | |     | |  | |  | |  |                | |                 | |              | || |..                  |  |      *****          |  | |   | |  | 
search RasMol script viewer Motif-ligand binding stats  asxmotif ..         || ||   |  |                        | ||| |                |   |          | |         ..        ||  |  |               ..                       |  | |        *****|               | || |         || |||       |  |        |  |         |  |          |  |    |||| ||  || |      |  |   *****  |||||  ..asxmotif..        | | |  || ||  |    | |         |  |               |  |           | | | |       |  |          ||||||   |  |       |  |     | || |   |  | |                   |  |            | |            | |        |  |    | |             |||  | | | ||     |  |  |  ||   |  |                                       ||||              | |                     | ||||| |   |     |  | | | |                ..asxmotif..     |   | |   | |  |       | ||                   | |     | |  | |  | |  |                | |                 | |              | || |..                  |  |      |  ||          |  | ***** |  | 
search RasMol script viewer Motif-ligand binding stats  asxturn ..         || ||   |  |                        | ||| |                |   |          | |         ..        ||  |  |               ..                       |  | |        ***|||               | || |         || |||       |  |        |  |         |  |          |  |    |||| ||  || |      |  |          |||||  ..asxturn..        | | |  || ||  |    | |         |  |               |  |           | | ***       |  |          ||||||   |  |       |  |     | || |   |  | |                   |  |            | |            | |        |  |    | |             ***  | | | ||     |  |  |  ||   |  |                                       ||||              | |                     | ||||| |   |     |  | | | |                ..asxturn..     |   | |   | |  |       | ||                   | |     | |  | |  | |  |                | |                 | |              | || |..                  |  |      |  ||          |  | |     |  | 
search RasMol script viewer Motif-ligand binding stats  betabulge ..         || ||   |  |                        | ||| |                |   |          | |         ..        **  |  |               ..                       |  | |        | ||||               | || |         || |||       |  |        |  |         |  |          |  |    |||| ||  || |      |  |          |||||  ..betabulge..        | | |  || ||  |    | |         |  |               |  |           | |           |  |          ||||||   |  |       |  |     | || |   |  | |                   |  |            | |            | |        |  |    | |              |   | | | ||     |  |  |  ||   |  |                                       ||||              | |                     | ||||| |   |     |  | | | |                ..betabulge..     |   | |   | |  |       | ||                   | |     | |  | |  | |  |                | |                 | |              | || |..                  |  |      |  ||          |  | |     |  | 
search RasMol script viewer Motif-ligand binding stats  betabulgeloop ..         || ||   |  |                        | ||| |                |   |          | |         ..            |  |               ..                       ******        | ||||               | || |         || |||       |  |        |  |         |  |          |  |    |||| ||  || |      |  |          |||||  ..betabulgeloop..        | | |  || ||  |    | |         |  |               |  |           | |           |  |          ||||||   |  |       |  |     | || |   |  | |                   |  |            | |            | |        |  |    | |              |   | | | ||     |  |  |  ||   |  |                                       ||||              | |                     | ||||| |   |     |  | | | |                ..betabulgeloop..     |   | |   | |  |       | ||                   | |     | |  | |  | |  |                | |                 | |              | || |..                  |  |      |  ||          |  | |     |  | 
search RasMol script viewer Motif-ligand binding stats  betaturn ..         ****|   |  |                        | |****                |   |          | |         ..            ****               ..                          | |        ****||               | || |         |****|       ****        |  |         |  |          ****    |||| ||  || |      |  |          |||||  ..betaturn..        | | |  ********    | |         ****               |  |           | |           ****          ||||||   ****       ****     **** |   **** |                   ****            | |            | |        ****    | |              |   | | ****     ****  ****|   ****                                       ||||              | |                     ****||| |   |     **** | | |                ..betaturn..     |   | |   | ****       | ||                   | |     | **** **** |  |                | |                 | |              | ****..                  ****      ****|          **** |     **** 
search RasMol script viewer Motif-ligand binding stats  gammaturn ..          |  |   |  |                        | ||| |                |   |          | |         ..            |  |               ..                          | |          ||||               | || |         |  | |       |  |        |  |         |  |                  |||| ||  || |      |  |          |||||  ..gammaturn..        | | |   |          | |                            |  |           | |                         ||||||                         |  |      | |                                   | |            | |                | |              |   | |   |                |   |                                          ||||              | |                       ||||| |   |        | | ***                ..gammaturn..     |   | |   | |  |       | ||                   | |     | |         |  |                | |                 | |              |  |  ..                            |   |             | |          
search RasMol script viewer Motif-ligand binding stats  nest ..          |  |   |  |                        ***|| |                |   |          ***         ..            |  |               ..                          ***          ****               | || |         |  ***       |  |        |  |         |  |                  **** ||  |***      |  |          ****|  ..nest..        | | |   |          | |                            |  |           ***                         ******                         |  |      ***                                   ***            ***                | |              |   | |   |                |   |                                          ****              ***                       ***** |   |        ***                    ..nest..     |   | |   | |  |       ***|                   ***     | |         |  |                ***                 ***              |  |  ..                            |   |             ***          
search RasMol script viewer Motif-ligand binding stats  niche ..          ****   ****                          |****                |   |                      ..            ****               ..                                                          ******         |    |       ****        ****         ****                    ********         ****           ****  ..niche..        *** |   |          ***                            ****                                                                      ****                                                                              ***              |   | |   |                |   |                                                                                            |   |                               ..niche..     |   | |   | ****       ****                           | |         ****                                                     ****  ..                            |   |                          
search RasMol script viewer Motif-ligand binding stats  schellmannloop ..                                               | |                  |   |                      ..                               ..                                                                         ******                                                                                              ..schellmannloop..            |   |                                                                                                                                                                                                                      |   | |   |                |   |                                                                                            |   |                               ..schellmannloop..     |   | |   |                                           | |                                                                        ..                            |   |                          
search RasMol script viewer Motif-ligand binding stats  stmotif ..                                               | |                  *****                      ..                               ..                                                                                                                                                                             ..stmotif..            *****                                                                                                                                                                                                                      |   | |   |                |   |                                                                                            |   |                               ..stmotif..     |   | |   |                                           | |                                                                        ..                            *****                          
search RasMol script viewer Motif-ligand binding stats  ststaple ..                                               | |                                             ..                               ..                                                                                                                                                                             ..ststaple..                                                                                                                                                                                                                                       ***** *****                *****                                                                                            *****                               ..ststaple..     ***** *****                                           | |                                                                        ..                                                           
search RasMol script viewer Motif-ligand binding stats  stturn ..                                               ***                                             ..                               ..                                                                                                                                                                             ..stturn..                                                                                                                                                                                                                                                                                                                                                                                                       ..stturn..                                                           ***                                                                        ..                                                           

chain B : DNA MISMATCH REPAIR PROTEIN MSH3
member of: GB:searchEAW95862GENE3D:searchG3DSA_1.10.1420.10/searchG3DSA_3.30.420.110/searchG3DSA_3.40.1170.10/searchG3DSA_3.40.50.300PANTHER:searchPTHR11361/searchPTHR11361_SF34PFAM:searchPF00488/searchPF01624/searchPF05188/searchPF05190/searchPF05192PROSITE PATTERNS:searchPS00486, SMART:searchSM00533/searchSM00534SUPERFAMILY:searchSSF48334/searchSSF52540/searchSSF53150/searchSSF55271UniProt:searchP20585
sec str:  ......hhhhhhhhhhhhh....eeeeee..eeeeehhhhhhhhhhh....eee..eeeeeee..hhhhhhhhhhhh...eeeeee..hhhhhh..........eeeeeee.................................eeeeeee.....eeeeeee......eeeeeee......hhhhhhhhhh..eeeee...hhhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhhhhhh..... .......hhhhhhhhhhhhhhhhhhhhhhhh.hhh.eee........eehhhhhhhh.............hhhhhhh...hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhh...hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhh.hhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee..eeeeeeee..hhhhh....eeeee...eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........eee...eeeeeee.hhhhhhhh........eeeee......eeeee...hhhhhhhhhhhhhhhhhhhh.......eeeee...eeeee...... ...hhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhh...eeeeeeeeee.....eeeeeeee.......hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh
sequence :  ..KSIYTPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDVNPLIKL..AVNVDEIMTDTSTSYLLCISENK..NIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPSALSEQTEALIHRATSVSVQDDRIRVERMDNIYFEYSHAFQAVTEFYAK... ..GIVNLEKPVICSLAAIIKYLKEFNLEKMLSKPENFKQLSSKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAIIPAVNSHIQSDLLRTVILEIPELLSPVEHYLKILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGVIDEIRMHLQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEERKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGA... ..STFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVS..FVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGLINTKRKRLKYFAKLWTMHNAQDLQKWTEEFNME
seq num:  ..217       227       237       247       257       267       277       287       297       307       317       327       337  ..344       354          ..376       386       396       406       416       426       436       446       456       466 ... ..482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922        ... ..941       951       961       971       981       991       1001      1011      1021  ..1043      1053      1063      1073      1083      1093      1103      1113    
search RasMol script viewer Motif-ligand binding stats  ASN_GLYCOSYLATION ..|  ||  |  |  ||  |  |            || |||     | |             || ||         | |                 |^***  |||||   | |             ..      | | | |          ..       | |  |||    |  || ||||  |                   |  | | ||| |  |         || ||    |  || ||  ..PS00001..                  |||||||||||| || |   ||| ||   ^***|| |||||^*** ||| |  || | | | | ||    |  | | |       |   |    | |   |  | ||    | |     | |||||  |              |  |       | || |||||       | || ||  |   |  ||| |  |     |  ||       |  ||     |  || |||  |     | || |   |  ||  ||  |   |||| |    |   |                    |  ||  ||  |       |   |        || ||      | |||    |  |             | | ^***    | |     || ||  | |            | | | |     |    |    | ..PS00001.. | ||||| |   || || ||     | || ||  ||  | | | |  |  | |     | |  ||  | ^*** |         |..               | |  ||| | |                |   |||  |  || |  |     | | ||     
search RasMol script viewer Motif-ligand binding stats  CAMP_PHOSPHO_SITE ..|  ||  |  |  ||  |  |            || |||     | |             || ||         | |                 | |    |**^*   | |             ..      | | | |          ..       | |  |||    |  || ||||  |                   |  | | ||| |  |         || ||    |  || ||  ..PS00004..                  |||||||||||| || |   ||| ||   | |||| |||||     ||| |  || | | | | ||    |  | | |       |   |    | |   |  | ||    | |     | |**^*  |              |  |       | || |||||       | || ||  |   |  ||| |  |     |  ||       |  ||     |  || |||  |     | || |   |  ||  ||  |   |||| |    |   |                    |  ||  ||  |       |   |        || ||      | |||    |  |             | |         | |     || ||  | |            | | | |     |    |    | ..PS00004.. | ||||| |   |**^* ||     | || ||  ||  | | | |  |  | |     | |  ||  |   |  |         |..               | |  ||| | |                |   |||  |  || |  |     | | ||     
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..|  ||  |  |  ||  |  |            || |||     | |             |^**|         | |                 | |    ^**     | |             ..      | | | |          ..       | |  |||    |  || ||||  |                   |  | | ||| |  |         || ||    |  || ||  ..PS00005..                  |||||||||||| || |   ^** ||   | |^** |||||     ||| |  || | | | | ||    |  | | |       |   |    | |   |  | ||    | |     | |||||  |              |  |       | || |||||       | || ||  |   |  ||| |  |     |  ||       |  ||     |  || |||  |     | || |   |  ||  ||  |   |^** |    |   |                    |  ||  ||  |       |   |        || ||      | |||    |  |             | |         ^**     || ||  | |            | | | |     |    |    | ..PS00005.. | ||||| |   |  || ||     | || ||  ||  | | | |  |  | |     | |  ||  |   |  |         |..               | |  ||| | |                |   ^**  |  || |  |     | | ||     
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..|  |^***  |  ||  |  |            || |||     | |             || ||         | |                 | |            | |             ..      | | | |          ..       | |  |||    ^***| ^***  |                   |  | | ||| ^***         || ||    |  || ||  ..PS00006..                  |||||||||||^*** |    ^***|   | | || |||||     ||| |  || | | | | ||    |  | | |       |   |    | |   |  | ||    | |     | ||||^***              |  |       | || |||||       ^*** ||  |   |  ||| |  |     |  ||       |  ||     |  || |||  |     ^*** |   |  ||  ||  |   | |  |    |   |                    |  ||  ||  |       |   |        || ||      ^***|    |  |             | |                 || ||  | |            | | | |     |    |    | ..PS00006.. ^***||| |   |  || ||     | || |^***|  | | | |  |  | |     | |  ||  |   |  |         ^..               | |  ||| | |                |    |   |  || |  |     | | ||     
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..|  |      |  ||  |  |            || |||     | |             || ||         | |                 | |            | |             ..      | | | |          ..       ^*****||        | ||||  |                   |  | | ||| |            || ||    |  || ||  ..PS00008..                  |||||||||||| |  |    || ||   | | || |||||     ||| |  || | | | | ||    |  | | |       |   |    | |   ^*****|    | |     | ||||                  |  |       | || |||||         |  ||  |   |  ||| |  |     |  ||       |  ||     |  || |||  |       |  |   |  ||  ||  |   ^*****    |   |                    |  ||  ||  |       |   |        || ||        | |    |  |             | |                 || |^*****            | | | |     ^*****    ^*..PS00008..   | ||| |   |  || ||     | || |    ^***** | |  |  | |     | |  ||  |   |  |          ..               | ^***** | |                ^*****   |  || |  |     | | ||     
search RasMol script viewer Motif-ligand binding stats  AMIDATION ..|  |      |  ||  |  |            || |||     | |             || ||         | |                 | |            | |             ..      | | | |          ..         |  |||        | ||||  |                   |  | | ||| |            || ||    |  || ||  ..PS00009..                  |||||||||||| |  |    || ||   | | || |||||     ||| |  || | | | ^***    |  | | |       |   |    | |      |  |    | |     | ||||                  |  |       | || |||||         |  ||  |   |  ||| |  |     |  ||       |  ||     |  || |||  |       |  |   |  ||  ||  |     |  |    |   |                    |  ||  ||  |       |   |        || ||        | |    |  |             | |                 || |   |              | | | |                 ..PS00009..   | ||| |   |  || ||     | || |    |  |   | |  |  | |     | |  ||  |   |  |          ..               | |  ||  | |                         |  || |  |     | | ||     
search RasMol script viewer Motif-ligand binding stats  ATP_GTP_A ..|  |      |  ||  |  |            || |||     | |             || ||         | |                 | |            | |             ..      | | | |          ..         |  |||        | ||||  |                   |  | | ||| |            || ||    |  || ||  ..PS00017..                  |||||||||||| |  |    || ||   | | || |||||     ||| |  || | | |   |     |  | | |       |   |    | |      |  |    | |     | ||||                  |  |       | || |||||         |  ||  |   |  ||| |  |     |  ||       |  ||     |  || |||  |       |  |   |  ||  ||  |     |  |    |   |                    |  ||  ||  |       |   |        || ||        | |    |  |             | |                 ********              | | | |                 ..PS00017..   | ||| |   |  || ||     | || |    |  |   | |  |  | |     | |  ||  |   |  |          ..               | |  ||  | |                         |  || |  |     | | ||     
search RasMol script viewer Motif-ligand binding stats  DNA_MISMATCH_REPAIR_2 ..|  |      |  ||  |  |            || |||     | |             || ||         | |                 | |            | |             ..      | | | |          ..         |  |||        | ||||  |                   |  | | ||| |            || ||    |  || ||  ..PS00486..                  |||||||||||| |  |    || ||   | | || |||||     ||| |  || | | |   |     |  | | |       |   |    | |      |  |    | |     | ||||                  |  |       | || |||||         |  ||  |   |  ||| |  |     |  ||       |  ||     |  || |||  |       |  |   |  ||  ||  |     |  |    |   |                    |  ||  ||  |       |   |        || ||        | |    |  |             | |                  | |                  | | | |                 ..PS00486..   | ||| |   |  || |*****************  |   | |  |  | |     | |  ||  |   |  |          ..               | |  ||  | |                         |  || |  |     | | ||     
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..|  |      *****  |  |            |*****     | |             || ||         | |                 | |            | |             ..      | | | |          ..         *****|        | ||||  |                   |  | ***** |            *****    |  *****  ..alphabetamotif..                  |*****|||||| |  |    || ||   | | || |||||     ||| |  || | | |   |     |  | | |       |   |    | |      |  |    | |     | ||||                  |  |       | || *****         |  ||  |   *****| |  |     *****       *****     ***** |||  |       |  |   |  ||  ||  |     |  |    |   |                    *********  |       |   |        || ||        | |    |  |             | |                  | |                  | | | |                 ..alphabetamotif..   ***** |   |  || ||     | || |       |   | |  |  | |     | |  ||  |   |  |          ..               | *****  | |                         ***** |  |     | | ||     
search RasMol script viewer Motif-ligand binding stats  asxturn ..|  |      |  |   |  |            || ||      | |             || ||         | |                 | |            | |             ..      | | | |          ..         |  | |        | ||||  |                   |  | | ||  |            || ||    |  || |   ..asxturn..                  |||||||||||| |  |    || ||   *** || |||||     ||| |  || *** |   |     |  | | |       |   |    | |      |  |    ***     | ||||                  |  |       | || ||||          |  ||  |   |  | ***  |     |  |        |  |      |  || |||  |       |  |   |  ||  ||  |     |  |    |   |                    |  ||  ||  |       |   |        || ||        | |    |  |             | |                  | |                  | | | |                 ..asxturn..   | ||  |   |  || ||     | || |       |   | |  |  | |     | |  ||  |   |  |          ..               | |  |   | |                         |  |  |  |     | | ||     
search RasMol script viewer Motif-ligand binding stats  betabulgeloop ..|  |      |  |   |  |            || ||      | |             || ||         | |                 | |            | |             ..      | | | |          ..         ******        | ||||  |                   |  | | ||  |            || ||    |  || |   ..betabulgeloop..                  |||||||||||| |  |    || ||       || |||||     ||| |  || | | |   |     |  | | |       |   |    | |      |  |            | ||||                  |  |       | || ||||          |  ||  |   |  | | |  |     |  |        |  |      |  || |||  |       |  |   |  ||  ||  |     |  |    |   |                    |  ||  ||  |       |   |        || ||        | |    |  |             | |                  | |                  | | | |                 ..betabulgeloop..   | ||  |   |  || ||     | || |       |   | |  |  | |     | |  ||  |   |  |          ..               | |  |   | |                         |  |  |  |     | | ||     
search RasMol script viewer Motif-ligand binding stats  betaturn ..|  |      ****   |  |            *****      | |             *****         | |                 | |            | |             ..      | | | |          ..         **** |        ****||  |                   **** ****  |            ****|    |  ****   ..betaturn..                  ***********| ****    ****|       |****|||     |****  || | | |   |     |  | | |       |   |    | |      ****            ****||                  ****       | || ****          ****|  |   **** | |  |     ****        ****      ************       |  |   ****|  ||  |     |  |    |   |                    ************       |   |        ****|        | |    |  |             | |                  | |                  | | | |                 ..betaturn..   ****  |   |  || ||     | || |       |   | ****  | |     | ********   |  |          ..               | ****   | |                         ****  |  |     | ****     
search RasMol script viewer Motif-ligand binding stats  gammaturn ..|  |             |  |                       | |                           | |                 ***            | |             ..      | | | |          ..            | |          ||||  |                          |   |             |  |    |   |     ..gammaturn..                      |||||  | |  |     |  |       |  |||||     ||| |  || | | |   |     |  | | |       |   |    | |                        ||||                             | ||  ||               |  |      | | |  |                              |  | |  |       |  |       |  ||  |     |  |    |   |                                       |   |         |  |        | |    |  |             ***                  ***                  | | ***                 ..gammaturn..     |   |   |  || ||     | || |       |   |       | |     | |          |  |          ..               | |      | |                               |  |     |   |      
search RasMol script viewer Motif-ligand binding stats  nest ..|  |             |  |                       ***                           ***                                | |             ..      | | ***          ..            ***          ****  |                          |   |             |  |    |   |     ..nest..                      ****|  | |  |     |  |       |  ****|     ||| |  || | | |   |     |  | | |       |   |    | |                        ****                             | ||  ||               |  |      *** |  |                              |  ***  |       |  |       |  ||  |     |  |    |   |                                       |   |         |  |        | |    |  |                                                       ***                     ..nest..     |   |   |  || ||     | || |       |   |       ***     | |          |  |          ..               ***      ***                               |  |     |   |      
search RasMol script viewer Motif-ligand binding stats  niche ..****             ****                                                                                        | |             ..      ***              ..                           |   |                          |   |             ****    |   |     ..niche..                          **** ****     ****       |   ****     *****  ****** |   |     **** ***       |   |    ***                         ***                             ***|  ||               ****          ****                              |    ****       ****       ********     ****    |   |                                       |   |         ****        ***    ****                                                                               ..niche..     |   |   ********     ******       |   |               ***          ****          ..                                                          ****     |   |      
search RasMol script viewer Motif-ligand binding stats  schellmannloop ..                                                                                                             | |             ..                       ..                           |   |                          |   |                     |   |     ..schellmannloop..                                                   ******           |   |     |   |                    |   |                                                                  ||  ||                                                               ******                                          |   |                                       |   |                                                                                                               ..schellmannloop..     |   |       | |                   |   |               | |                        ..                                                                   |   |      
search RasMol script viewer Motif-ligand binding stats  stmotif ..                                                                                                             | |             ..                       ..                           |   |                          |   |                     |   |     ..stmotif..                                                                    *****     *****                    |   |                                                                  *****|                                                                                                               *****                                       |   |                                                                                                               ..stmotif..     |   |       | |                   |   |               | |                        ..                                                                   |   |      
search RasMol script viewer Motif-ligand binding stats  ststaple ..                                                                                                             | |             ..                       ..                           *****                          *****                     *****     ..ststaple..                                                                                                       *****                                                                   *****                                                                                                                                                           *****                                                                                                               ..ststaple..     *****       | |                   *****               | |                        ..                                                                   *****      
search RasMol script viewer Motif-ligand binding stats  stturn ..                                                                                                             ***             ..                       ..                                                                                              ..stturn..                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ..stturn..                 ***                                       ***                        ..                                                                              

chain D : DNA LOOP2 MINUS STRAND
sec str:  .......................
sequence :  ..TCTATCTGAAGCCGATCGATG
seq num:  ..3         13         

chain E : DNA LOOP2 PLUS STRAND
sec str:  ..........................
sequence :  ..TCATCGATCGCAGCTTCAGATAGG
seq num:  ..26        36        46  

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