triangle PDBeMotif: 3qxp  
  coner Sequences coner   coner 3D motifs coner   coner Ligand environment coner   coner Ligand bonds coner
   
coner
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coner
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Enzyme   2.7.11.22
Classification transferase/transferase inhibitor    | release date: Wed, Mar 2, 2011
Title cdk2 in complex with inhibitor rc-3-89
Authors A.BECKER, E.SCHONBRUNN, H.HAN, R.ALAM, S.BETZI
Method X-RAY DIFFRACTION (resolution: 1.75Å)
PDBe Citation   
Small molecules:    search X64 X64 binding statistics X64   search EDO EDO binding statistics EDO
Ligand bond colours:   *  covalent   *  ionic   *  hydrogen   *  electrostatic   *  van-der-waals   *  plane-atom   *  plane-plane   *  undefined  - Click here to show 5Å bonds
Chain A sequence:
GPLGSPEFMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHT
ENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF
GVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTS
MPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL
Residue colours:  hydrophilic   hydrophobic   intermediate 
Assembly 1     View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain A : CYCLIN-DEPENDENT KINASE 2
member of: CATH:search1.10.510.10/search3.30.200.20GENE3D:searchG3DSA_1.10.510.10/searchG3DSA_3.30.200.20PANTHER:searchPTHR24056/searchPTHR24056_SF168PFAM:searchPF00069PROSITE PATTERNS:searchPS00107/searchPS00108, PROSITE PROFILES:searchPS50011, SMART:searchSM00220SUPERFAMILY:searchSSF56112UniProt:searchP24941
JMol viewer RasMol script viewer  X64 300A  ..         *       *            * *   ..                       *               *******  *                                         ** *         **                                                                                                                                                         
JMol viewer RasMol script viewer  EDO 299A  ..         |       |            | |   ..                       |               |||||||  |                                         || |         ||                                                                                                      *        *   *                                     
sec str:  .....eeeeeeeee...eeeeeeee.....eeeeeee.......hhhhhhhhhhhhhh.......eeeeeee..eeeeeee...eehhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee..........................hhhhhh......hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh........hhhhh.............hhhhh....hhhhhhhhhhhh........hhhhhhhhhhhh...........
sequence :  ..MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIR..TEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL
seq num:  ..1         11        21        31    ..41        51        61        71        81        91        101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291     
search RasMol script viewer Motif-ligand binding stats  CAMP_PHOSPHO_SITE ..|  |  ||||  | ||      |  |||    |   .. ||    |   |  || | |  |   ||                                             |    ||||| | | || || |  | |      |    |            ||  |     | |   |||||  | |   ||  | |      |  |   |   |  |  |  | ||||| |||  |            | || |      |  | || **^* | |  |  |  |         
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..|  |  ||||  | ||      |  |||    |   .. ||    |   |  || | |  |   ||                                             |    |^**| | | || || |  | |      |    |            ||  |     | |   |||||  | |   ||  ^**      |  |   |   |  |  |  | ||||| |||  |            | || |      |  | || || ^** |  |  |  |         
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..|  |  ||||  | ||      |  |||    |   ..**|    |   |  || | |  |   ||                                             |    | | | | | || || |  | |      |    |            ||  |     | |   |^***  | |   ||  | |      ^***   |   |  ^***  | |||^***||  |            | || |      |  | || ||     |  |  |  |         
search RasMol script viewer Motif-ligand binding stats  TYR_PHOSPHO_SITE ..|  |  ||******^|      |  |||    |   ..  |    |   |  || | |  |   ||                                             |    | | | | | || || |  | |      |    |            ||  |     | |   | ||   | |   ||  | |             |   |        | ||| |  ||  |            | || |      |  | || ||     |  |  |  |         
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..|  |  || |  |  |      |  |||    |   ..  ^*****   |  || | |  |   ||                                             ^***** | | | | || || |  | |      ^*****            ||  |     | |   | ||   | ^*****  | |             |   |        | ||| |  ||  |            | || |      |  | || ||     |  |  |  |         
search RasMol script viewer Motif-ligand binding stats  PROTEIN_KINASE_ATP ..|  |  || ************************   ..           |  || | |  |   ||                                                    | | | | || || |  | |                        ||  |     | |   | ||   |     |   | |             |   |        | ||| |  ||  |            | || |      |  | || ||     |  |  |  |         
search RasMol script viewer Motif-ligand binding stats  PROTEIN_KINASE_ST ..|  |  ||    |  |      |  |||        ..           |  || | |  |   ||                                                    | ****^********  | |                        ||  |     | |   | ||   |     |   | |             |   |        | ||| |  ||  |            | || |      |  | || ||     |  |  |  |         
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..|  |  ||    |  |      |  |||        ..           ***** | |  |   ||                                                    | | | | || ||    | |                        ||  |     | |   | ||   |     |   | |             |   |        | ||| |  ||  |            | || |      |  | *****     |  |  |  |         
search RasMol script viewer Motif-ligand binding stats  asxmotif ..|  |  ||    |  |      *****|        ..           |  |  | |  |   ||                                                    | | | | || ||    | |                        ||  |     | |   | ||   |     |   | |             |   |        | ||| |  ||  |            | || |      |  | || ||     |  |  |  |         
search RasMol script viewer Motif-ligand binding stats  asxturn ..|  |  ||    |  |      |  | |        ..           |  |  | |  |   ||                                                    | | | | || ||    | |                        ||  |     | |   | ||   |     |   | |             |   |        | ||| |  ||  |            | |***      |  | || ||     |  |  |  |         
search RasMol script viewer Motif-ligand binding stats  betabulge ..|  |  **    |  |      |  | |        ..           |  |  | |  |   **                                                    | | | | || ||    | |                        ||  |     | |   | ||   |     |   | |             |   |        | ||| |  ||  |            | |         |  | || ||     |  |  |  |         
search RasMol script viewer Motif-ligand binding stats  betabulgeloop ..|  |        |  |      ******        ..           |  |  | |  |                                                         | | | | || ||    | |                        ||  |     | |   | ||   |     |   | |             |   |        | ||| |  ||  |            | |         |  | || ||     |  |  |  |         
search RasMol script viewer Motif-ligand binding stats  betaturn ..****        |  |         | |        ..           ******* |  |                                                         | | | | ****|    | |                        ||  |     | |   | ||   |     |   | |             |   |        ****| |  |****            | |         |  | ****|     ****  |  |         
search RasMol script viewer Motif-ligand binding stats  nest ..|  |        |  |         ***        ..                   |  |                                                         *** *** || ||    ***                        ||  |     ***   | ||   |     |   ***             |   |          *** |  ||  |            | |         |  | ||  |     |  |  |  |         
search RasMol script viewer Motif-ligand binding stats  niche ..****        ****                    ..                   ****                                                               | |****                               |****           | ||   |     |   |               |   |           ***********            ***         **********     ****  ****         
search RasMol script viewer Motif-ligand binding stats  ststaple ..                                    ..                                                                                      | |  |                                |               | |*****     *****               *****                                                                                
search RasMol script viewer Motif-ligand binding stats  stturn ..                                    ..                                                                                      | |  |                                |               ***                                                                                                                   
search RasMol script viewer Motif-ligand binding stats  Catalytic site ..                                    ..                                                                                      * *  *                                *                                                                                                                                     

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