triangle PDBeMotif: 3qtz  
  coner Sequences coner   coner 3D motifs coner   coner Ligand environment coner   coner Ligand bonds coner
   
coner
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coner
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Enzyme   2.7.11.22
Classification transferase/transferase inhibitor    | release date: Wed, Feb 23, 2011
Title cdk2 in complex with inhibitor rc-2-36
Authors A.BECKER, E.SCHONBRUNN, H.HAN, R.ALAM, S.BETZI
Method X-RAY DIFFRACTION (resolution: 2.00Å)
PDBe Citation   
Small molecules:    search X42 X42 binding statistics X42   search EDO EDO binding statistics EDO
Ligand bond colours:   *  covalent   *  ionic   *  hydrogen   *  electrostatic   *  van-der-waals   *  plane-atom   *  plane-plane   *  undefined  - Click here to show 5Å bonds
Chain A sequence:
GPLGSPEFMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHT
ENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAF
GVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTS
MPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL
Residue colours:  hydrophilic   hydrophobic   intermediate 
Assembly 1     View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain A : CYCLIN-DEPENDENT KINASE 2
member of: CATH:search1.10.510.10/search3.30.200.20GENE3D:searchG3DSA_1.10.510.10/searchG3DSA_3.30.200.20PANTHER:searchPTHR24056/searchPTHR24056_SF168PFAM:searchPF00069PROSITE PATTERNS:searchPS00107/searchPS00108, PROSITE PROFILES:searchPS50011, SMART:searchSM00220SUPERFAMILY:searchSSF56112UniProt:searchP24941
JMol viewer RasMol script viewer  X42 453A  ..         *  *    *            * *   ..                       *               *******  *                                          * *          *                                                                                                                                                         
JMol viewer RasMol script viewer  EDO 452A  ..         |  |    |            | |   ..                       |               |||||||  |                                          | |          |                                                                                                      *        *   *                                     
JMol viewer RasMol script viewer  EDO 451A  ..         |  |    |            | |   ..                       |               |||||||  *                                          | |          |                                                                                                      |        |   |                                   * 
sec str:  .....eeeeeeeee...eeeeeeee.....eeeeeee.......hhhhhhhhhhhhh........eeeee.....eeeeee...eehhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee..........................hhhhhh......hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh........hhhhh.............hhhhh....hhhhhhhhhhhh........hhhhhhhhhhhh...........
sequence :  ..MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIR..TEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL
seq num:  ..1         11        21        31    ..41        51        61        71        81        91        101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291     
search RasMol script viewer Motif-ligand binding stats  CAMP_PHOSPHO_SITE ..|  |  ||||    |       | || |    |   .. ||    |  ||  || | |  |   || | |             |   |                       |   |||||| | | || || |  | |      |    |            ||  |     | |   |||||  | |    |  | |      |  |   |   |  |  |  | ||||| |||  |      | |   | || |      |  | || **^* ||| ||| || |         
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..|  |  ||||    |       | || |    |   .. ||    |  ||  || | |  |   || | |             |   |                       |   ||^**| | | || || |  | |      |    |            ||  |     | |   |||||  | |    |  ^**      |  |   |   |  |  |  | ||||| |||  |      | |   | || |      |  | || || ^**|| ||| || |         
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..|  |  ||||    |       | || |    |   ..**|    |  ||  || | |  |   || | |             |   |                       |   || ||| | | || || |  | |      |    |            ||  |     | |   |^***  | |    |  | |      ^***   |   |  ^***  | |||^***||  |      | |   | || |      |  | || ||    || ||| || |         
search RasMol script viewer Motif-ligand binding stats  TYR_PHOSPHO_SITE ..|  |  ||******^       | || |    |   ..  |    |  ||  || | |  |   || | |             |   |                       |   || ||| | | || || |  | |      |    |            ||  |     | |   | ||   | |    |  | |             |   |        | |||||  ||  |      | |   | || |      |  | || ||    || ||| || |         
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..|  |  || |            | || |    |   ..  ^*****  ||  || | |  |   || | |             |   |                       ^***** ||| | | || || |  | |      ^*****            ||  |     | |   | ||   | ^*****  | |             |   |        | |||||  ||  |      | |   | || |      |  | || ||    || ||| || |         
search RasMol script viewer Motif-ligand binding stats  PROTEIN_KINASE_ATP ..|  |  || ************************   ..       |  ||  || | |  |   || | |             |   |                           || ||| | | || || |  | |                        ||  |     | |   | ||   |         | |             |   |        | |||||  ||  |      | |   | || |      |  | || ||    || ||| || |         
search RasMol script viewer Motif-ligand binding stats  PROTEIN_KINASE_ST ..|  |  ||              | || |        ..       |  ||  || | |  |   || | |             |   |                           || ||****^********  | |                        ||  |     | |   | ||   |         | |             |   |        | |||||  ||  |      | |   | || |      |  | || ||    || ||| || |         
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..|  |  ||              | || |        ..       ********* | |  |   || | |             |   |                           || ||| | | || ||    | |                        ||  |     | |   | ||   |         | |             |   |        | |||||  ||  |      | |   | || |      |  | *****    || ||| || |         
search RasMol script viewer Motif-ligand binding stats  asxmotif ..|  |  ||              | || |        ..       |  ||  |  | |  |   || | |             *****                           || ||| | | || ||    | |                        ||  |     | |   | ||   |         | |             |   |        | |||||  ||  |      | |   | || |      |  | || ||    || ||| || |         
search RasMol script viewer Motif-ligand binding stats  asxturn ..|  |  ||              ***| |        ..       |  ||  |  | |  |   || | |                                             || ||| | | || ||    | |                        ||  |     | |   | ||   |         | |             |   |        | |||||  ||  |      ***   | |***      |  | || ||    || ||| || |         
search RasMol script viewer Motif-ligand binding stats  betabulge ..|  |  **              |  | |        ..       |  ||  |  | |  |   ** | |                                             || ||| | | || ||    | |                        ||  |     | |   | ||   |         | |             |   |        | |||||  ||  |            | |         |  | || ||    || ||| || |         
search RasMol script viewer Motif-ligand binding stats  betabulgeloop ..|  |                  ******        ..       |  ||  |  | |  |      | |                                             || ||| | | || ||    | |                        ||  |     | |   | ||   |         | |             |   |        | |||||  ||  |            | |         |  | || ||    || ||| || |         
search RasMol script viewer Motif-ligand binding stats  betaturn ..|  |                     | |        ..       ********  | |  |      | |                                             *****| | | ****|    | |                        ||  |     | |   | ||   |         | |             |   |        ******|  |****            | |         |  | ****|    ***********         
search RasMol script viewer Motif-ligand binding stats  nest ..|  |                     ***        ..              |  | |  |      | |                                                *** *** || ||    ***                        ||  |     ***   | ||   |         ***             |   |          *** |  ||  |            | |         |  | ||  |     |  |  |  |         
search RasMol script viewer Motif-ligand binding stats  niche ..****                                ..              **** ****      ***                                                      | |****                               |****           | ||   |                         |   |           ***********            ***         **********     ****  ****         
search RasMol script viewer Motif-ligand binding stats  ststaple ..                                    ..                                                                                      | |  |                                |               | |*****                         *****                                                                                
search RasMol script viewer Motif-ligand binding stats  stturn ..                                    ..                                                                                      | |  |                                |               ***                                                                                                                   
search RasMol script viewer Motif-ligand binding stats  Catalytic site ..                                    ..                                                                                      * *  *                                *                                                                                                                                     

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