3qir: Sequences

PDBeMotif: 3qir

		Sequences				3D motifs				Ligand environment				Ligand bonds

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Classification:	rna binding protein \| release date: Thu, Jan 27, 2011
Title:	crystal structure of piwil2 paz domain
Authors:	A.DONG, A.K.WERNIMONT, A.M., C.BIAN, C.BOUNTRA, C.H.ARROWSMITH, C.XU, J.KANIA, J.MIN, J.WEIGELT, STRUCTURAL GENOMICS CONSORTIUM (S
Method:	X-RAY DIFFRACTION (resolution: 2.45Å)

PDBe Citation

Ligand bond colours:

covalent

ionic

hydrogen

electrostatic

van-der-waals

plane-atom

plane-plane

undefined

- Click here to show 5Å bonds

Chains A,B,C,D sequence:
RNDCVLDVMHAIYQQNKEHFQDECTKLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMSDGKEITFLEYYSKNYGITVK
EEDQPLLIHRPSERQDNHGMLLKGEILLLPELSFMTGIPEKMKKDFRAMKDLAQQINLSPKQHHSALE

Residue colours: hydrophilic hydrophobic intermediate

Assembly 1

View the assembly/model: (

)

Motif search

chain:

Sequence numbers:

Using:	φ/ψ residues code secondary structures
	coordinates of: Cαs Side-chain

View the fragment:

chain A : PIWI-LIKE PROTEIN 2 member of: GENE3D:G3DSA_2.170.260.10, PANTHER:PTHR22892/PTHR22892_SF30, PFAM:PF02170, PROSITE PROFILES:PS50821, SMART:SM00949, SUPERFAMILY:SSF101690/SSF53098, UniProt:Q8TC59
`sec str:`	`....hhhhhhhhhhhhhhhhhhhhhhhhhh..eeee.....eee..eee.......eee.....eeehhhhhhhhhh.........eeee...............eeehhh.ee..`
`sequence :`	`..NDCVLDVMHAIYQQNKEHFQDECTKLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMSDGKEITFLEYYSKNYGITVKEEDQPLLIHRPSERQDN..LLKGEILLLPELSFMT`
`seq num:`	`..2 12 22 32 42 52 62 72 82 92 ..101 111`
`ASN_GLYCOSYLATION`	`.. \| \|\| \|\| \| \| \|^***\| \| \|\|\| \|\| \| \| \| \| \|\| \| \|\|\|\|\| \| \| \| .. \|\| \|`
`PKC_PHOSPHO_SITE`	`.. \| \|\| \|\| \| \| \| \|^ \| \|\|^\| \| \| \| \| \|\| \| \|^\| \| ^ .. \|\| \|`
`CK2_PHOSPHO_SITE`	`.. \| \|\| \|\| \| \| \| \| \| \|\|^* ^* \| ^*\| \| \|^* \| .. \|\| \|`
`asxturn`	`.. \| \|\| \|\| \| \| \| \| ***\|\| \| \| \| \| \| \| \| \| \| \| .. \|\| \|`
`betabulgeloop`	`.. \| \|\| \|\| \| ****** \| \|\| \| \| \| \| \| \| \| \| \| \| .. \|\| \|`
`betaturn`	`.. \| \|\| \|\| \| \| \| \| \|**** \| \| \| \| \| \| \| \| \| .. \|\| \|`
`nest`	`.. \| \|\| \|\| \| * \| \|\| \| * \| \| *** \| \| \| .. \|\| \|`
`niche`	`.. \| \|**** **** \| \| ** .. \|**`
`stmotif`	`.. \| \| ***** .. \| \|`
`ststaple`	`.. *** .. ***`

Assembly 2

View the assembly/model: (

)

Motif search

chain:

Sequence numbers:

Using:	φ/ψ residues code secondary structures
	coordinates of: Cαs Side-chain

View the fragment:

chain B : PIWI-LIKE PROTEIN 2 member of: GENE3D:G3DSA_2.170.260.10, PANTHER:PTHR22892/PTHR22892_SF30, PFAM:PF02170, PROSITE PROFILES:PS50821, SMART:SM00949, SUPERFAMILY:SSF101690/SSF53098, UniProt:Q8TC59
`sec str:`	`...hhhhhhhhhhhhhhhhhhhhhhhhhh..eeee....eeee..eee.......eee.....eeehhhhhhhhhh.........eeee......eeehhh.eee...`
`sequence :`	`..DCVLDVMHAIYQQNKEHFQDECTKLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMSDGKEITFLEYYSKNYGITVKEEDQPLLIHRP..GEILLLPELSFMTGI`
`seq num:`	`..3 13 23 33 43 53 63 73 83 ..104 114`
`ASN_GLYCOSYLATION`	`.. \| \|\| \|\| \| \| \|^***\| \| \|\|\| \|\| \| \| \| \| \|\| \| \|\|\|\|\| \| .. \|\| \|`
`PKC_PHOSPHO_SITE`	`.. \| \|\| \|\| \| \| \| \|^ \| \|\|^\| \| \| \| \| \|\| \| \|^**\| \| .. \|\| \|`
`CK2_PHOSPHO_SITE`	`.. \| \|\| \|\| \| \| \| \| \| \|\|^* ^* \| ^*\| \| \|^* \| .. \|\| \|`
`asxturn`	`.. \| \|\| \|\| \| \| \| \| ***\|\| \| \| \| \| \| \| \| \| \| \| .. \|\| \|`
`betabulgeloop`	`.. \| \|\| \|\| \| ****** \| \|\| \| \| \| \| \| \| \| \| \| \| .. \|\| \|`
`betaturn`	`.. \| \|\| ** \| \| \| \|** \| \| \| \| \| \| \| \| \| .. \|\| \|`
`nest`	`.. \| \|\| \|\| \| * \| \|\| \| * \| \| *** \| \| \| .. \|\| \|`
`niche`	`.. \| \|**** **** \| \| ** .. \|**`
`stmotif`	`.. \| \| ***** .. \| \|`
`ststaple`	`.. *** .. ***`

chain C : PIWI-LIKE PROTEIN 2 member of: GENE3D:G3DSA_2.170.260.10, PANTHER:PTHR22892/PTHR22892_SF30, PFAM:PF02170, PROSITE PROFILES:PS50821, SMART:SM00949, SUPERFAMILY:SSF101690/SSF53098, UniProt:Q8TC59
`sec str:`	`.....hhhhhhhhhhhhhhhhhhhhhhhhhh..eeee.....eee..eee.......eee.....eeehhhhhhhhhh.........eeee.....eeehhh.eee...`
`sequence :`	`..RNDCVLDVMHAIYQQNKEHFQDECTKLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMSDGKEITFLEYYSKNYGITVKEEDQPLLIHRP..EILLLPELSFMTGI`
`seq num:`	`..1 11 21 31 41 51 61 71 81 ..105 115`
`ASN_GLYCOSYLATION`	`.. \| \|\| \| \| \|^***\| \| \|\|\| \|\| \| \| \| \| \|\|\| \| \| \|\|\|\|\| \| .. \|\| \|`
`PKC_PHOSPHO_SITE`	`.. \| \|\| \| \| \| \|^ \| \|\|^\| \| \| \| \| \|\|\| \| \| \|^**\| \| .. \|\| \|`
`CK2_PHOSPHO_SITE`	`.. \| \|\| \| \| \| \| \| \|\|^* ^* \| ^*\| \| \| \|^* \| .. \|\| \|`
`asxturn`	`.. \| \|\| \| \| \| \| ***\|\| \| \| \| \| \| \| \| \| \| \| \| \| .. \|\| \|`
`betabulgeloop`	`.. \| \|\| \| ****** \| \|\| \| \| \| \| \| \| \| \| \| \| \| \| .. \|\| \|`
`betaturn`	`.. \| ** \| \| \| \|** \| \| \| \| \| \| \| \| \| \| \| .. \|\| \|`
`nest`	`.. \| \|\| \| * \| \|\| \| * \| \| \| \| *** \| \| \| .. \|\| \|`
`niche`	`.. **** **** \| \| \| \| ** .. \|**`
`stmotif`	`.. ***** \| .. \| \|`
`ststaple`	`.. *** .. ***`

Assembly 3

View the assembly/model: (

)

Motif search

chain:

Sequence numbers:

Using:	φ/ψ residues code secondary structures
	coordinates of: Cαs Side-chain

View the fragment:

chain D : PIWI-LIKE PROTEIN 2 member of: GENE3D:G3DSA_2.170.260.10, PANTHER:PTHR22892/PTHR22892_SF30, PFAM:PF02170, PROSITE PROFILES:PS50821, SMART:SM00949, SUPERFAMILY:SSF101690/SSF53098, UniProt:Q8TC59
`sec str:`	`...hhhhhhhhhhhhhhhhhhhhhhhhhh..eeee....eeee..eee.......eee.....eeehhhhhhhhhh.........eeee.................eee....eeeee.`
`sequence :`	`..DCVLDVMHAIYQQNKEHFQDECTKLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMSDGKEITFLEYYSKNYGITVKEEDQPLLIHRP..ERQDNHGMLLKGEILLLPELSFMTGI`
`seq num:`	`..3 13 23 33 43 53 63 73 83 ..93 103 113`
`ASN_GLYCOSYLATION`	`.. \| \|\| \| \| \|^***\| \| \|\|\| \|\| \|\| \|\|\| \| \|\| \| \|\|\|\|\| \| .. \| \| \| \|\| \|`
`PKC_PHOSPHO_SITE`	`.. \| \|\| \| \| \| \|^ \| \|\|^\| \|\| \|\|\| \| \|\| \| \|^\| \| .. \| \| \|\| \|`
`CK2_PHOSPHO_SITE`	`.. \| \|\| \| \| \| \| \| \|\|^* ^\|\| ^\| \| \|^* \| .. \| \| \|\| \|`
`asxturn`	`.. \| \|\| \| \| \| \| ***\|\| \| \| \|\|\| \| \| \| \| \| \| \| .. \| \| \|\| \|`
`betabulgeloop`	`.. \| \|\| \| **** \| \|\| \| *** \| \| \| \| \| \| \| .. \| \| \|\| \|`
`betaturn`	`.. \| \|\| \| \| \| \| \|** **\| \| \| \| \| \| \| \| .. \| \| \|\| \|`
`nest`	`.. \| \|\| \| * \| \|\| \| * \| \| * \| \| \| .. * \|\| \|`
`niche`	`.. **** **** \| \| ** .. \|**`
`stmotif`	`.. ***** .. \| \|`
`ststaple`	`.. .. *****`

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