triangle PDBeMotif: 3kdh  
  coner Sequences coner   coner 3D motifs coner   coner Ligand environment coner   coner Ligand bonds coner
   
coner
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coner
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Classification hormone receptor    | release date: Thu, Oct 22, 2009
Title structure of ligand-free pyl2
Authors H.FAN, N.YAN, P.YIN, Q.HAO, X.YUAN
Method X-RAY DIFFRACTION (resolution: 1.65Å)
PDBe Citation   
Ligand bond colours:   *  covalent   *  ionic   *  hydrogen   *  electrostatic   *  van-der-waals   *  plane-atom   *  plane-plane   *  undefined  - Click here to show 5Å bonds
Chains A,B,C sequence:
MSSSPAVKGLTDEEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVG
SVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEE
DTKMFVDTVVKLNLQKLGVAATSAPMHDDE
Residue colours:  hydrophilic   hydrophobic   intermediate 
Assembly 1     View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain A : PUTATIVE UNCHARACTERIZED PROTEIN AT2G26040
member of: CATH:search3.30.530.20GENE3D:searchG3DSA_3.30.530.20PANTHER:searchPTHR31213/searchPTHR31213_SF7PFAM:searchPF10604SUPERFAMILY:searchSSF55961UniProt:searchO80992
sec str:  ...........hhhhhhhhhhhhhhhh.......eeeeeeeeee..hhhhhhhhhhh..hhhhh...eeeeeeee.......eeeeee......eeeeeeeeeee....eeeeee..........eeeeeeeee........eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh......
sequence :  ..SSSPAVKGLTDEEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSAPMHDDE
seq num:  ..2         12        22        32        42        52        62        72        82        92        102       112       122       132       142       152       162       172       182      
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..     |  ||  |         |  |   | ||     ^**   |  ||          |  |  |||   || | |  ^**|    |||   | ^** || | || | ^**   | | |  |    |  |     ^**             |  ||  |                ||   |       
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..     |  |^***         |  |   | ||           |  ||          |  |  |||   || | |  ^***    |||   ^***  || | || |       | | |  |    ^***     | |             |  |^***                ||   |       
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..     |  |             |  |   | ||           |  ||          |  |  |||   || | |  |       |^*****     || | || |       | | |  |             | |             |  |                    ^*****       
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..     |  |             |  |   | ||           *****          |  |  |||   || | |  |       | |         || | || |       | | |  |             | |             |  |                     |   |       
search RasMol script viewer Motif-ligand binding stats  asxturn ..     |  |             |  |   ***|           |  |           |  |  |||   || | |  |       | |         || ***| |       | | |  |             | |             |  |                     |   |       
search RasMol script viewer Motif-ligand binding stats  betabulge ..     |  |             |  |   |  |           |  |           |  |  |**   ** | |  |       | |         **    | |       | | |  |             | |             |  |                     |   |       
search RasMol script viewer Motif-ligand binding stats  betaturn ..     |  |             |  |   |  |           ****           |  |  |        | ****       | |               | |       | | |  |             | |             |  |                     |   |       
search RasMol script viewer Motif-ligand binding stats  nest ..     |  |             |  |   |  |                          |  |  |        ***  |       | |               ***       | | |  |             | |             |  |                     |   |       
search RasMol script viewer Motif-ligand binding stats  niche ..     ****             ****   ****                          *******          ****       ***                         ********             ***             ****                     |   |       
search RasMol script viewer Motif-ligand binding stats  ststaple ..                                                                                       | |                                                                                       *****       
search RasMol script viewer Motif-ligand binding stats  stturn ..                                                                                       ***                                                                                                   

chain B : PUTATIVE UNCHARACTERIZED PROTEIN AT2G26040
member of: CATH:search3.30.530.20GENE3D:searchG3DSA_3.30.530.20PANTHER:searchPTHR31213/searchPTHR31213_SF7PFAM:searchPF10604SUPERFAMILY:searchSSF55961UniProt:searchO80992
sec str:  .......hhhhhhhhhhhhhhhh.......eeeeeeeeee..hhhhhhhhhhh..hhhhh...eeeeeeee.......eeeeee......eeeeeeeeeee....eeeeeeee........eeeeeeeeee......eeeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.....
sequence :  ..AVKGLTDEEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSAPMHDD
seq num:  ..6         16        26        36        46        56        66        76        86        96        106       116       126       136       146       156       166       176       186 
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE .. |  ||  ||    |   |  |   | ||     ^**   |  ||          |  |  |||   || | |  ^**|    |||   | ^** || | || | ^**     | |  |    |  |  | |^**             |  ||  |                ||   |      
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE .. |  |^***|    |   |  |   | ||           |  ||          |  |  |||   || | |  ^***    |||   ^***  || | || |         | |  |    ^***  | || |             |  |^***                ||   |      
search RasMol script viewer Motif-ligand binding stats  MYRISTYL .. |  ||   |    |   |  |   | ||           |  ||          |  |  |||   || | |  |       |^*****     || | || |         | |  |          | || |             |  |                    ^*****      
search RasMol script viewer Motif-ligand binding stats  alphabetamotif .. |  ||   |    |   |  |   | ||           *****          |  |  |||   || | |  |       | |         || | || |         | |  |          | || |             |  |                     |   |      
search RasMol script viewer Motif-ligand binding stats  asxturn .. |  ||   |    |   |  |   ***|           |  |           |  |  |||   || | |  |       | |         || ***| |         | |  |          ***| |             |  |                     |   |      
search RasMol script viewer Motif-ligand binding stats  betabulge .. |  ||   |    |   |  |   |  |           |  |           |  |  |**   ** | |  |       | |         **    | |         | |  |             | |             |  |                     |   |      
search RasMol script viewer Motif-ligand binding stats  betaturn .. |  ||   |    |   |  |   |  |           ****           |  |  |        | ****       | |               | |         | |  |             | |             |  |                     |   |      
search RasMol script viewer Motif-ligand binding stats  nest .. |  ||   |    |   |  |   |  |                          |  |  |        ***  |       | |               ***         | |  |             | |             |  |                     |   |      
search RasMol script viewer Motif-ligand binding stats  niche .. ****|   |    |   ****   ****                          *******          ****       ***                           ******             ***             ****                     |   |      
search RasMol script viewer Motif-ligand binding stats  stmotif ..     *****    |   |                                                                | |                                                                                       |   |      
search RasMol script viewer Motif-ligand binding stats  ststaple ..              *****                                                                | |                                                                                       *****      
search RasMol script viewer Motif-ligand binding stats  stturn ..                                                                                   ***                                                                                                  

Assembly 2     View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain C : PUTATIVE UNCHARACTERIZED PROTEIN AT2G26040
member of: CATH:search3.30.530.20GENE3D:searchG3DSA_3.30.530.20PANTHER:searchPTHR31213/searchPTHR31213_SF7PFAM:searchPF10604SUPERFAMILY:searchSSF55961UniProt:searchO80992
sec str:  ...........hhhhhhhhhhhhhhhh.......eeeeeeeeee..hhhhhhhhhhh..hhhhh...eeeeeeee.......eeeeee......eeeeeeeeeee....eeeeee..........eeeeeeeeee......eeeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.....
sequence :  ..SSSPAVKGLTDEEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSAPMHDD
seq num:  ..2         12        22        32        42        52        62        72        82        92        102       112       122       132       142       152       162       172       182     
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..     |  || ||| |      |  |   | ||     ^**   |  ||  |  |    |  |  |     || | |  ^**|    |||   | ^** || | || | ^**     | |  |    |  |  | |^**             |  ||  ||               ||   |      
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..     |  |^***| |      |  |   | ||           |  ||  |  |    |  |  |     || | |  ^***    |||   ^***  || | || |         | |  |    ^***  | || |             |  |^***|               ||   |      
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..     |  || | | |      |  |   | ||           |  ||  |  |    |  |  |     || | |  |       |^*****     || | || |         | |  |          | || |             |  ||   |               ^*****      
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..     |  || | | |      |  |   | ||           *****  |  |    |  |  |     || | |  |       | |         || | || |         | |  |          | || |             |  ||   |                |   |      
search RasMol script viewer Motif-ligand binding stats  asxturn ..     |  || | | |      |  |   ***|           |  |   |  |    |  |  |     || | |  |       | |         || ***| |         | |  |          ***| |             |  ||   |                |   |      
search RasMol script viewer Motif-ligand binding stats  betabulge ..     |  || | | |      |  |   |  |           |  |   |  |    |  |  |     ** | |  |       | |         **    | |         | |  |             | |             |  ||   |                |   |      
search RasMol script viewer Motif-ligand binding stats  betaturn ..     |  || | | |      |  |   |  |           ****   |  |    |  |  |        | ****       | |               | |         | |  |             | |             |  ||   |                |   |      
search RasMol script viewer Motif-ligand binding stats  nest ..     |  || | | |      |  |   |  |                  |  |    |  |  |        ***  |       | |               ***         | |  |             ***             |  ||   |                |   |      
search RasMol script viewer Motif-ligand binding stats  niche ..     ****| | | |      ****   ****                  ****    *******          ****       ***                           ******             | |             ****|   |                |   |      
search RasMol script viewer Motif-ligand binding stats  stmotif ..         ***** |                                                                       | |                                              | |                 |   |                |   |      
search RasMol script viewer Motif-ligand binding stats  ststaple ..           *****                                                                       | |                                              | |                 *****                *****      
search RasMol script viewer Motif-ligand binding stats  stturn ..                                                                                       ***                                              ***                                                 

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