triangle PDBeMotif: 3gtl  
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Enzyme   2.7.7.6
Classification transcription, transferase/dna-rna hybri    | release date: Fri, Mar 27, 2009
Title backtracked rna polymerase ii complex with 13mer with g<>u m
Authors D.A.BUSHNELL, D.WANG, K.D.WESTOVER, M.LEVITT, R.D.KORNBE, X.HUANG
Method X-RAY DIFFRACTION (resolution: 3.38Å)
PDBe Citation   
Small molecules:    search MG MG binding statistics MG   search ZN ZN binding statistics ZN
Ligand bond colours:   *  covalent   *  ionic   *  hydrogen   *  electrostatic   *  van-der-waals   *  plane-atom   *  plane-plane   *  undefined  - Click here to show 5Å bonds
Chain A sequence:
MVGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGH
FGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQ
LVSRGGCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLP
VPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGR
PVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHP
GAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNA
DFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVI
PTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQ
VCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVR
FLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFV
ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEK
QSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNI
RRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQ
AFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYL
EPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRA
AMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDHMLKKIENTMLENITLRGVENIE
RVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDG
SYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGA
FDVMIDEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEAT
SPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENENSR
Chain B sequence:
MSDLANSEKYYDEDPYGFEDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTE
SDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDS
ESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEI
RSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVED
GFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDH
FGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVS
QVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSE
WGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIV
EDDESLGHKELKVRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEEND
LDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQ
KPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRT
NTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDG
LKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGN
EGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVE
GRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAA
KLLFQELMAMNITPRLYTDRSRDF
Chain C sequence:
MSEEGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQL
EYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAK
KGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPV
DQVVVRGIDTLQKKVASILLALTQMDQDKVNFASGDNNTASNMLGSNEDVMMTGAEQDPYSNASQMGNTGSGGYDNAW
Chain E sequence:
MDQENERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESISKFPDMGSLWV
EFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDE
KRELLKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYRICM
Chain F sequence:
MSDYEEAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQHEQIRRKTLKEKAIPKDQRA
TTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVDL
Chain H sequence:
MSNTLFDDIFQVSEVDPGRYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTVTIASSLNLEDTPANDSSATRSWR
PPQAGDRSLADDYDYVMYGTAYKFEEVSKDLIAVYYSFGGLLMRLEGNYRNLNNLKQENAYLLIRR
Chain I sequence:
MTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDRECPKCHS
RENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQKNKRTQFS
Chain J sequence:
MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKFLRYNPLEKRD
Chain K sequence:
MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEG
YDPKDALKNACNSIINKLGALKTNFETEWNLQTLAADDAF
Chain L sequence:
MSREGFQIPTNLDAAAAGTSQARTATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR
Residue colours:  hydrophilic   hydrophobic   intermediate 
Assembly 1     View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain A : DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
member of: GENE3D:searchG3DSA_2.40.40.20/searchG3DSA_3.30.1490.180PANTHER:searchPTHR19376/searchPTHR19376_SF33PFAM:searchPF00623/searchPF04983/searchPF04990/searchPF04992/searchPF04997/searchPF04998/searchPF05000/searchPF05001PRINTS:searchPRICHEXTENSNPROSITE PATTERNS:searchPS00115, SMART:searchSM00663SUPERFAMILY:searchSSF64484UniProt:searchP04050
JMol viewer RasMol script viewer  MG 1736A  ..                                                                                                                                                        ..MG ..                          ..                                                                                                                                                                                                                                                                                            * *                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ..MG ..                                                                                     ..                                                         ..                                                                                                                                                                                                
JMol viewer RasMol script viewer  ZN 1735A  ..                                                                *  *      *  *                                                                          ..ZN ..                          ..                                                                                                                                                                                                                                                                                            | |                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ..ZN ..                                                                                     ..                                                         ..                                                                                                                                                                                                
JMol viewer RasMol script viewer  ZN 1734A  ..                                                                |  |      |  |                                                                          ..ZN ..                          ..                                                                                                                                                                                                                                                                                            | |                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ..ZN ..                                                                                     ..                                                         ..                                                                                                                                                                                                
sec str:  ...............eeee...hhhhhhhhh..................................................eeeeeeeee....hhhhhhhhh.................hhhhh....hhhhhhhhhhh................. ................eee..eee..........hhhhhhhhhhh.hhhhhhhh.............eeeeee.hhhhh.............hhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhh.......................................ee..eeeeeeee.......eeeeehhhhh...eeee....hhhhhhhhhhh.......eeeee.....ee.................eeee.......eeee.....hhhhheeeeeeee....eeehhhhh..........eeeee...hhhhhhhhhh...hhhhh.hhhhh......hhhhhhhhhhhhh...eeehhhhhhhhhhh.................eeehhhhhh.......eee...............eeee..eeeee..hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh....hhhhhhhhh..ee.........................hhhhhhee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....................hhhhh......eeeee......hhhhhhhhhh............................hhhhhhhhhhhhhhhhhhhhh.....eeeee.hhhhhhhh...............hhhhhhhhhhhhhhhh........hhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh....... .......hhhhhhhhhh.........eeee.......hhhhhhhhhhh.....hhh.eeeeeeee...........hhhhhhh..........eeeeeee..hhhhhh..hhhhhhhhhhhhhh...eeee........eeeee.............hhhhhhh.............eeeee..eee.....eee..eeeee....hhhhhh..........ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.........hhhhh..hhhhhhhh.hhhhhhhhhhhh..ee....hhhhhh......hhhhh.eee.
sequence :  ..GQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPS... ..LVSRGGCGNTQPTIRKDGLKLVGSWK..LRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTL... ..KKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSL..QQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVV..AEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMI
seq num:  ..3         13        23        33        43        53        63        73        83        93        103       113       123       133       143         ... ..161       171       181   ..199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829       839       849       859       869       879       889       899       909       919       929       939       949       959       969       979       989       999       1009      1019      1029      1039      1049      1059      1069         ... ..1092      1102      1112      1122      1132      1142      1152      1162      1172 ..1187      1197      1207      1217      1227      1237   ..1254      1264      1274      1284      1294      1304      1314      1324      1334      1344      1354      1364      1374      1384      1394      1404      1414      1424      1434        
search RasMol script viewer Motif-ligand binding stats  ASN_GLYCOSYLATION ..|   |||   ||||      |  || ||    | |  |  |         | | |    | || | | ||| |                   |  || ||  ||         |  | |   |  |  | |  | | |||  | |      |..PS00001..    |    |  | | ||||   | |..    |  |    |  || ||| ||||||| || ||||       || ||   | ^***|     ||| ||    ^***             |   |       |  |    |    |  | |   | ||| |       |  | ||   | |     | |||| | | | ||| | |  |         |  ||  |  || |     | |||  |  || |                               |  |           | | ^***        | |      | |  || || |  |||||||| || |             ||||||||  |      || ||  || |   | |       | | |||||||  |      | |   | ||      | |         | | |  |          |  ||           | |||||   || ||| |  ||||   |  |          |  ||||| |   | |||||| || ||           |  ||  | |  || ||||  |              || ||    |  | |  ||  | |   | || | |    |  |  |  ||    | |  || ||  |        || |    |^***| |||    |  | | |||||    |  ||    |  |  |           || ||| || | | |         |  ||        | ||| |     | |  | ||| |        | || ||   |  ||  ||||| |   || ||| || |           | |                |  | ||| ||       | |  || |||||||  ..PS00001..||||          | |            |  || |    |  ||  |  | |  |       | |  || |           | ..  | |      | |  ||          ||  | |        |  |          .. | | | ||   |  |^***|                                   | ^***|  | || | || | |  |     |    |       |  || |||   |            |||  |||  | ^***       |  |     |  ||| |  ||||   || ||| | ||||||    
search RasMol script viewer Motif-ligand binding stats  CAMP_PHOSPHO_SITE ..|   |||   ||||      |  || ||    | |  |  |         | | |    | || | | ||| |                   |  || ||  ||         |  | |   |  |  | |  | | |||  | |      |..PS00004..    |    |  | | ||||   | |..    |  |    |  || ||| ||||||| || ||||       || ||   |  || |     ||| ||                     |   |       |  |    |    |  | |   | ||| |       |  | ||   | |     | |||| | | | ||| | |  |         |  ||  |  || |     | |||  |  || |                               |  |           | |             | |      | |  || || |  |||||||| || |             **^*||||  |      || ||  || |   | |       | | |||||||  |      | |   | ||      | |         | | |  |          |  ||           | |||||   || ||| |  ||||   |  |          |  ||||| |   | |||||| || ||           |  ||  | |  || ||||  |              || ||    |  | |  ||  | |   | || | |    |  |  |  ||    | |  || ||  |        || |    | | || |||    |  | | |||||    |  ||    |  |  |           || ||| || | | |         |  ||        | ||| |     | |  | ||| |        | || ||   |  ||  ||||| |   || ||| || |           | |                |  | ||| ||       | |  || |||||||  ..PS00004..**^*          | |            |  || |    |  ||  |  | |  |       | |  || |           | ..  | |      | |  ||          ||  | |        |  |          .. | | | ||   |  |  | |                                   |    ||  | || | || | |  |     |    |       |  || |||   |            |||  |||  |  |         |  |     |  ||| |  ||||   || ||| | ||||||    
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..|   |||   ^**|      |  || ||    | |  |  |         | | |    | || | | ||| |                   |  || ||  ||         |  | |   |  |  ^**  | | |||  | |      |..PS00005..    |    |  ^** ||||   ^**..    |  |    |  |^**|| ||||||| || ||||       || ||   |  |^**     ^** ||                     |   |       |  |    |    |  ^**   ^**|| |       |  | ||   ^**     | |||| | | | ||| | |  |         |  ||  |  || |     | |||  |  |^**                               |  |           ^**             | |      | |  || || |  |||||||| |^**             || ^**||  |      || ||  || |   | |       ^** |||||||  |      | |   ^**|      | |         | | |  |          |  ||           | |||||   || ||| |  ^**|   |  |          |  ||||^**   ^**||||| || ||           |  ||  | |  || ||||  |              || ||    |  | |  ||  | |   | || | |    |  |  |  ||    | |  || ||  |        || |    | ^**| |||    |  | | |||||    |  ||    |  |  |           || ||| || | | |         |  ||        | ||| |     | |  | ||| |        | |^**|   |  ||  ||||| |   || ||| || |           ^**                |  | ||| ||       | |  || |||||||  ..PS00005..**            | |            |  || |    |  ||  |  ^**  |       | |  || |           | ..  | |      | |  ||          ||  ^**        |  |          .. | | | ||   |  |  ^**                                   |    ||  | || | || | |  |     |    |       |  || |||   |            |||  |||  |  |         |  |     |  ||| |  ||||   || ||| | ||||||    
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search RasMol script viewer Motif-ligand binding stats  AMIDATION ..    | |    | |      |  || ||    | |               | | |    | || | | | | |                   |  || ||  ||         |  | |   |  |       | | |||  | |       ..PS00009..                ||||      ..            |  |  | | ||||||| || ||||       || ||                |  ||                     |   |       |  |                  |  || |          ^***           | |||| |   | ||| |              |  ||  |  || |     | |||  |  |                                  |  |                           | |      | |   |  | |  |||||||| |                || ||  |         || ||  || |   | |         | |||||||  |      | |             | |         | | |             |  ||           | |||||   || ||  |  ||                   |  ||||        |  ||  || ||           |  ||  | |  || ||||                 |^***    |  | |  |   | |   | || |            |  ||      |  || ||           || |    | |  | |||    |  |   ||| |    |  |        |  |           |  |   |  | | |         |  ||        | ||| |     | |  | ||| |        | |       |  ||  ||||| |   || ||| || |                                   ||| ||         |  || |||||||  ..PS00009..              | |            |  || |    |  ||       |  |       | |  || |             ..  | |      | |  ||          ||  |          |  |          .. | | | ||   |                                                 |  |  | |  | | |                     |  || |||                | |  | |  |  |                  |  ||| |  ||||   || ||| | ||||||    
search RasMol script viewer Motif-ligand binding stats  RNA_POL_II_REPEAT ..    | |    | |      |  || ||    | |               | | |    | || | | | | |                   |  || ||  ||         |  | |   |  |       | | |||  | |       ..PS00115..                ||||      ..            |  |  | | ||||||| || ||||       || ||                |  ||                     |   |       |  |                  |  || |                         | |||| |   | ||| |              |  ||  |  || |     | |||  |  |                                  |  |                           | |      | |   |  | |  |||||||| |                || ||  |         || ||  || |   | |         | |||||||  |      | |             | |         | | |             |  ||           | |||||   || ||  |  ||                   |  ||||        |  ||  || ||           |  ||  | |  || ||||                 |  |     |  | |  |   | |   | || |            |  ||      |  || ||           || |    | |  | |||    |  |   ||| |    |  |        |  |           |  |   |  | | |         |  ||        | ||| |     | |  | ||| |        | |       |  ||  ||||| |   || ||| || |                                   ||| ||         |  || |||||||  ..PS00115..              | |            |  || |    |  ||       |  |       | |  || |             ..  | |      | |  ||          ||  |          |  |          .. | | | ||   |                                                 |  |  | |  | | |                     |  || |||                | |  | |  |  |                  |  ||| |  ||||   || ||| | ||||||    
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..    | |    | |      |  *****    | |               | | |    | || | | | | |                   ************         |  | |   |  |       | *****  | |       ..alphabetamotif..                ||||      ..            |  |  | *****|||| |*****|       || ||                *****                     |   |       |  |                  |  || |                         | |||| |   ***** |              *****  |  || |     | |||  |  |                                  |  |                           | |      | |   |  | |  |||||||| |                *****  |         *****  || |   | |         | |||||||  |      | |             | |         | | |             *****           *******   || ||  *****                   |  ||||        ************           |  ||  | ***** ||||                 |  |     |  | |  |   | |   | || |            *****      ********           || |    | |  | |||    |  |   ||| |    |  |        |  |           |  |   |  | | |         *****        | ||| |     | |  ***** |        | |       *****  ||||| |   ********* |                                   ||| ||         |  *****|||||  ..alphabetamotif..              | |            |  || |    *****       |  |       | |  || |             ..  | |      | *****          ||  |          |  |          .. | | | ||   |                                                 |  |  | |  | | |                     ***** |||                | |  | |  |  |                  *****| |  ||||   || ||| | ||||||    
search RasMol script viewer Motif-ligand binding stats  asxmotif ..    | |    | |      |  || |     | |               | | |    | || | | | | |                   |  |  ||  |          |  | |   |  |       | | |||  | |       ..asxmotif..                ||||      ..            |  |  | | || |||| || || |       || ||                |  |                      |   |       |  |                  |  || |                         *****| |   | ||  |              |  |   |  || |     | |||  |  |                                  |  |                           | |      | |   |  | |  |||||||| |                || ||  |         || ||  || |   | |         | |||||||  |      | |             | |         | | |             |  |            | || |    || ||  |  |                    |  ||||        |  ||  |  |            |  ||  | |  |  ||||                 |  |     |  | |  |   | |   | || |            |  |       |  |  |            || |    | |  | |||    |  |   ||| |    |  |        |  |           |  |   |  | | |         |  |         | ||| |     | |  | ||  |        | |       |  ||  ||||| |   || ||  |  |                                   ||| ||         |  || |||||||  ..asxmotif..              | |            |  || |    |  |        |  |       | |  || |             ..  | |      | |  |           ||  |          |  |          .. | | | ||   |                                                 |  |  | |  | | |                     |  || |||                | |  | |  |  |                  |  | | |  ||||   || ||| | ||||||    
search RasMol script viewer Motif-ligand binding stats  asxturn ..    | |    | |      |  || |     | |               | | |    | || | | | | |                   |  |  ||  |          |  ***   |  |       | | |||  | |       ..asxturn..                ||||      ..            |  |  | | || |||| || || |       || ||                |  |                      |   |       |  |                  |  || |                         ***| | |   | ||  |              |  |   |  || |     | |||  |  |                                  |  |                           | |      | |   |  | |  |||||||| |                || ||  |         || ||  || |   | |         | |||||||  |      | |             | |         | | |             |  |            | || |    || ||  |  |                    |  ||||        |  ||  |  |            |  ||  | |  |  ||||                 |  |     |  | |  |   ***   | || |            |  |       |  |  |            || |    ***  | |||    |  |   *** |    |  |        |  |           |  |   |  | ***         |  |         | ||| |     ***  | ||  |        | |       |  ||  ||||| |   || ||  |  |                                   ||| ||         |  || |||||||  ..asxturn..              | |            |  || |    |  |        |  |       | |  || |             ..  | |      ***  |           ||  |          |  |          .. | | | ||   |                                                 |  |  | |  | | |                     |  || |||                | |  | |  |  |                  |  | | |  ||||   || ||| | ||||||    
search RasMol script viewer Motif-ligand binding stats  betaturn ..    | |    | |      |  ****     | |               | | |    | || | | | | |                   ***********          |  |     |  |       | ****|  | |       ..betaturn..                ||||      ..            |  |  | **** |||| |**** |       *****                ****                      |   |       ****                  |  || |                         **** | |   *******              ****   |  || |     ****|  ****                                  |  |                           | |      | |   **** |  |*****|| |                ****|  |         ****|  || |   | |         | *****||  |      | |             | |         | | |             ****            ******    *****  ****                    ****|||        ***********            |  ||  | ****  ||||                 ****     **** |  |   | |   | || |            ****       *******            ****    | |  ****|    ****    |  |    ****        |  |           |  |   |  |             ****         ****| |          ****  |        | |       ********|||| |   ***********                                   |****|         |  *********|  ..betaturn..              | |            |  || |    ****        |  |       | |  || |             ..  | |        ****           |****          |  |          .. | | | ||   |                                                 |  |  | |  | | |                     ********|                | |  | |  ****                  **** | |  ||||   |****| | *****|    
search RasMol script viewer Motif-ligand binding stats  gammaturn ..    | |    | |      |   |       | |               *****    | |*** | | ***                                        |  |     |  |       |   | |  | |       ..gammaturn..                ***|      ..            |  |  |   || |*** |  |  |                                                      |   |                             |  || |                         |  | | |     |   |                     |  |***       | |                                        |  |                           | |      | |        |  |  |  || |                 |  |  |          |  |  || |   | |         |   |  ||  |      | |             | |         | | |                                                                         ||||                               |  ||  |       ||||                          |  | |  |   | |   | || |                                           | |    | |    | |            |  |                |  |           |  |   |  |                            | | |            |   |        | |               |||| |                                                 | | ||         |   |    |  |  ..gammaturn..              | |            |  || |                |  |       | |  || |             ..  | |                       |   |          |  |          .. | | ***|   |                                                 |  |  | |  | | |                           | |                ***  | |                             | |  ||||   |  | | *** |  |    
search RasMol script viewer Motif-ligand binding stats  nest ..    | |    | |      |   |       ***                        ***    ***                                            |  |     |  |       |   | |  | |       ..nest..                 | |      ..            |  |  |   |*** |  |  |  |                                                      |   |                             |  || |                         |  | | |     |   |                     |  |          ***                                        |  |                           ***      | |        |  |  |  || |                 |  |  |          |  |  |***   | |         |   |  ||  |      | |             | |         | | |                                                                         ****                               |  ||  |       ****                          |  | |  |   | |   ***| |                                           | |    ***    ***            |  |                |  |           |  |   |  |                            *** |            |   |        | |               **** |                                                 | | ||         |   |    |  |  ..nest..              ***            |  || |                |  |       | |  || |             ..  | |                       |   |          |  |          .. ***    |   |                                                 |  |  | |  | | |                           ***                     | |                             ***  ****   |  ***     |  |    
search RasMol script viewer Motif-ligand binding stats  niche ..    ***    ***      |   |                                                                                        ****     ****       |   | ******       ..niche..                 ***      ..            ****  |   |    ****  ****                                                      |   |                             |  ****                         **** ***     |   |                     ****                                                     ****                                    ***        ****  ****| |                 *******          *******      ***         |   ********      ***             ***         *****                                                                          ***                               ********                                     **** ****   ***      ***                                           ***                          ****                ****           ****   ****                              ***            |   |        ***                  ***                                                 | ****         |   |    ****  ..niche..                             *******                ****       *********             ..  ***                       |   |          ****          ..        |   |                                                 ******* **** ***                                                   | |                                         |    |     ****    
search RasMol script viewer Motif-ligand binding stats  schellmannloop ..                    |   |                                                                                                            |   |              ..schellmannloop..                          ..                  |   |                                                                    |   |                             |   |                                        |   |                                                                                                                                           | |                                                           |   |                                                                                                                                                                                                                                                                                                                                                                                                  |   |                                                                                 |   |          |   |          ..schellmannloop..                                                                                     ..                            |   |                        ..        |   |                                                                                                                    | |                                         ******             
search RasMol script viewer Motif-ligand binding stats  stmotif ..                    *****                                                                                                            |   |              ..stmotif..                          ..                  |   |                                                                    |   |                             *****                                        |   |                                                                                                                                           | |                                                           |   |                                                                                                                                                                                                                                                                                                                                                                                                  |   |                                                                                 |   |          |   |          ..stmotif..                                                                                     ..                            |   |                        ..        |   |                                                                                                                    | |                                                            
search RasMol script viewer Motif-ligand binding stats  ststaple ..                                                                                                                                     *****              ..ststaple..                          ..                  *****                                                                    *****                                                                          *****                                                                                                                                           | |                                                           *****                                                                                                                                                                                                                                                                                                                                                                                                  *****                                                                                 *****          *****          ..ststaple..                                                                                     ..                            *****                        ..        *****                                                                                                                    | |                                                            
search RasMol script viewer Motif-ligand binding stats  stturn ..                                                                                                                                                        ..stturn..                          ..                                                                                                                                                                                                                                                                                                                          ***                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ..stturn..                                                                                     ..                                                         ..                                                                                                                                 ***                                                            

chain B : DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
member of: GENE3D:searchG3DSA_2.40.270.10/searchG3DSA_2.40.50.150/searchG3DSA_3.90.1100.10/searchG3DSA_3.90.1110.10PANTHER:searchPTHR20856/searchPTHR20856_SF7PFAM:searchPF00562/searchPF04560/searchPF04561/searchPF04563/searchPF04565/searchPF04566/searchPF04567PROSITE PATTERNS:searchPS01166, SUPERFAMILY:searchSSF64484UniProt:searchP08518
JMol viewer RasMol script viewer  ZN 1307B  ..                                                   ..                                             ..                                                                                                                                                                            ..ZN ..                                                                                             ..                                                         ..                                                                                                                                                                ..ZN ..                                      ..                                                                                                                                                                                                      ..ZN ..                                                                                                                                                                                                                                      *  *               *  *                                       
sec str:  ........hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.............eee...eee.....eee.hhhhhh......eeeeee.......eeeeeee.......hhhhhhhhhhhhhh..........ee....ee....eeee.....ee............eeeee.........eeee.........................hhhhhhhhh.....hhhhhhhh....hhhhhhhhhhhhhhhh...hhhhhh....... ...hhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh.........hhh.eeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh........hhhhhh........hhhhhhhhhhee............hhhhh.................ee.....ee.....hhhhhhhhhh..eehhhhh...........ee..ee..ee.hhhhhhhhhhhhhh........eeee.hhhh.eeee.....eee..ee..............hhhhhhhhhhhhhh.... ....hhhhhhhhh....eehhhhh....................................ee..hhhhhh..hhhhh......hhhhhhhhhhhhhhh....hhhhhh......eee...........................eeee..........eeeeehhhhhh....eeeeeeeee..........................................eee........eee..... ...eee.........eeeeee..eeee...eeeeeeeeeeee................eeeeee......ee.......eeehhhhh....hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhh.........ee.............eee........hhhhh.eee.....................ee.hhhhhhhhhhhh.hhhhhhh........eeeee...........................eeeee.hhhhhhhhhhhhhh...eeee.......
sequence :  ..DESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLI..ISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKK..KVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIG... ..KEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVE..LAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPI..AKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQD... ..EYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEA..DVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPIS... ..SKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYTDRSRDF
seq num:  ..20        30        40        50        60         ..90        100       110       120       130  ..164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324         ... ..345       355       365       375       385       395       405       415       425          ..446       456       466       476       486       496    ..509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       ... ..678       688       698       708     ..722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912     ... ..933       943       953       963       973       983       993       1003      1013      1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143      1153      1163      1173      1183      1193      1203      1213        
search RasMol script viewer Motif-ligand binding stats  ASN_GLYCOSYLATION ..||||  |||||||                    |    |  |  |      ..             ^***|    |       |^***        | ..|        |  || ||| |||| ||| ||||  |       ^***|        |  |      |  | |       | || |  | |            | || |  |  |         || ||| |    |  || | |   |  ||  |   |  | |  || | | ..PS00001..     |  ||  || || | | ||   | |  |  |    |  ||||||   |  || ||          |   || ||||     ||  |||..   | ||| ||  | | |||||  ||||| |          |  || ||  |     .. |  | || ||| ||  || ||   ||| ^*** |        |  || || | |  |  |    |  |    | ||   |  | |   || |||| ||||| ||       | |                  | |              || | |    ..PS00001..  | |    ||||      || ||      |  |    ..  | ||        | ||  | | || ||  | ||  |  | | ||   | |  |  |    || ||               || ||| |||||                 | |      ^*** | |  | |   |  |     | |  |        ||||     |  || ||| | ||  || |         |..PS00001..| ||     |  |          || |||        | |  | ||      | | ||  | | | |    | |      ||| |  | |     |   |     | || | || |      | |||    || |||   || || ||| |               |  |            | |    | ||||   || ||   | ||||  ||                 | || | | |||||     | | | |               |  | || |  ||||   
search RasMol script viewer Motif-ligand binding stats  CAMP_PHOSPHO_SITE ..||||  |||||||                    |    |  |  |      ..                 |    |       | |          **..|        |  || ||| |||| ||| ||||  |         | |        |  |      |  | |       | || |  | |            | || |  |  |         || ||| |    |  || | |   |  ||  |   |  | |  || | | ..PS00004..     |  ||  || || | | ||   | |  |  |    |  ||||||   |  || ||          |   || **^*     ||  |||..   | ||| ||  | | |||||  ||||| |          |  || ||  |     .. |  | || ||| ||  || ||   |||    | |        |  || || | |  |  |    |  |    | ||   |  | |   || |||| ||||| ||       | |                  | |              || | |    ..PS00004..  | |    ||||      || ||      |  |    ..  | ||        | ||  | | || ||  | ||  |  | | ||   | |  |  |    || ||               || ||| |||||                 | |      | || | |  | |   |  |     | |  |        ||||     |  || ||| | ||  || |         |..PS00004..| ||     |  |          || |||        | |  | ||      | | ||  | | | |    | |      ||| |  | |     |   |     | || | || |      | |||    || |||   || || ||| |               |  |            | |    | ||||   || ||   | ||||  ||                 | || | | |||||     | | | |               |  | || |  ||||   
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..||||  |||||||                    |    |  |  |      ..                 |    |       | |            ..*        |  || ||| |||| ||| ||||  |         ^**        |  |      |  | |       | || |  | |            ^**^**  |  |         || ||| |    |  || | |   |  ||  |   |  | |  || | | ..PS00005..     |  ||  || || | | ||   ^**  |  |    |  ||||||   |  || ||          |   ||  ||      ||  |||..   | ||| ||  | | |||||  ||||^**          |  || ||  |     .. |  | || ||| ||  || ||   |||    | |        |  || || | |  |  |    |  |    | ||   |  | |   |^**^** ||||| ||       | |                  | |              || | |    ..PS00005..  | |    ||||      || ||      |  |    ..  | ||        | ||  | | || ||  | ||  |  | ^**|   | |  |  |    || ||               |^**|| |||||                 | |      | || | |  | |   |  |     | |  |        |^**     |  || ||| | ||  || |         |..PS00005..^**|     |  |          || |||        ^**  | ||      | | ||  ^** | |    | |      ||| |  | |     |   |     | || | || |      | |||    || |||   || |^**|| |               |  |            | |    | ||||   || ||   | ||||  ||                 | || | | |||||     | | | |               |  | |^**  ^**|   
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..||||  ^***|||                    |    ^***  |      ..                 |    |       | |            ..         |  || ||| ||^***|| ||||  |                    |  |      |  | |       ^*** |  | |                    |  |         || ||| |    |  || | |   |  ||  |   |  | |  ^*** | ..PS00006..     |  ||  || || | ^***        |  |    |  ||||||   |  || ||          |   ||  ||      ||  ^**..   | ||| ||  | | |||||  ||||  |          |  || ||  |     .. |  | || ||| ||  || ||   |||    | |        |  || || | |  |  |    |  |    | ||   |  | |   |   ||| ||||| ||       | |                  | |              || | |    ..PS00006..  | |    ||||      || ||      |  |    ..  | ||        | |^*** | || ||  | ||  |  |    |   | |  |  |    || ||               |   || |||||                 | |      | ^*** |  | |   ^***     | ^***        ||||     |  || ||| | ||  ^***         ^..PS00006..^***     |  |          ^***||             | ||      | | ||      | |    | |      ||| |  | |     |   |     ^*** | || |      | |||    || |||   || || ||| |               |  |            | |    | ||||   || ||   | ||||  ||                 | || | | |||||     | | | |               |  | |      | |   
search RasMol script viewer Motif-ligand binding stats  TYR_PHOSPHO_SITE ..||||  |||||||                    |    |  |  |      ..                 |    |       | |            ..         |  || ||| || |  || ||||  |                    |  |      |  | |         |  |  | |                    |  |         || ||| |    |  || | |   |  ||  |   |  | |   |   | ..PS00007..     |  ||  || || | | |         |  |    |  ||||||   |  || ||          |   ||  ********^|  |||..   | ||| ||  | | |||||  ||||  |          |  || ||  |     .. |  | || ||| ||  || ||   |||    | |        |  || || | |  |  |    |  |    | ||   |  | |   |   ||| ||||| ||       | |                  | |              || | |    ..PS00007..  | |    ||||      || ||      |  |    ..  | ||        | |     | || ||  | ||  |  |    |   | |  |  |    || ||               |   || |||||                 | |      |  |   |  | |            |    |        ||||     |  || ||| | ||   |            ..PS00007..         |  |           | |||             | ||      | | ||      | |    | |      ||| |  | |     |   |     | |  | || |      | *******^| ******^| || ||| |               |  |            | |    | ||||   || ||   | ||||  ||                 | || | | |||||     | | | |               |  | |      | |   
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..||||  |||||||                    |    |  |  |      ..                 ^*****       | |            ..         |  || ||| || |  || ||||  |                    |  |      |  | |         |  |  | |                    |  |         || ||| |    |  || | |   |  ||  |   |  | |   |   | ..PS00008..     |  ||  || || | | |         |  |    |  ||||||   |  || ||          |   ||  ||      ||  |||..   | ||| |^***** |||||  ||||  |          |  || ||  |     .. |  | || ||| ||  || |^*****|    | |        |  || || | |  |  |    |  |    | ^*****  | |   |   ||| ||||| ||       | |                  | |              || | |    ..PS00008..  | |    ||||      || ||      |  |    ..  | ||        | |     | || |^*****|  |  |    |   | |  |  ^*****| ||               ^***** |||||                 | |      |  |   ^*****            ^*****        ||||     |  || ||| | ^*****            ..PS00008..         |  |           | |||             | ||      ^*****      | |    | |      ||| |  | |     |   |     | |  | || |      |  ||     | |||    | || ||| |               |  |            | |    | |||^***** ||   | ||||  ||                 | || | | |||||     | | | |               |  | |      | |   
search RasMol script viewer Motif-ligand binding stats  AMIDATION ..||||  |||||||                    |    |  |  |      ..                              | |            ..         |  || ||| || |  || ||||  |                    |  |      |  | |         |  |  | |                    |  |         || ||| |    |  || | |   |  ||  |   |  | |   |   ^*..PS00009..     |  ||  || || | | |         |  |    |  ||||||   |  |^***          |   ||  ||      ||  |||..   | ||| ||  |   |||||  ||||  |          |  || ||  |     .. |  | || ||| ||  || |    | |    | |        |  || || | |  |  |    |  |    |  |      | |   |   ||| ||||| ||       | |                  | |              || | |    ..PS00009..  | |    ||||      || ||      |  |    ..  | ||        | |     | || |   |  |  |  |    |   | |  |       || ||                   |  |||||                 | |      |  |   |  |                            ||||     |  || ||| |  |                ..PS00009..         |  |           | |||             | ||      | | |       | |    | |      ||| |  | |     |   |     | |  | || |      |  ||     | |||    | |^***| |               |  |            | |    | |||    |  ||   | ||||  ||                 | || | | |||||     | | | |               |  | |      | |   
search RasMol script viewer Motif-ligand binding stats  RNA_POL_BETA ..||||  |||||||                    |    |  |  |      ..                              | |            ..         |  || ||| || |  || ||||  |                    |  |      |  | |         |  |  | |                    |  |         || ||| |    |  || | |   |  ||  |   |  | |   |     ..PS01166..     |  ||  || || | | |         |  |    |  ||||||   |  || ||          |   ||  ||      ||  |||..   | ||| ||  |   |||||  ||||  |          |  || ||  |     .. |  | || ||| ||  || |    | |    | |        |  || || | |  |  |    |  |    |  |      | |   |   ||| ||||| ||       | |                  | |              || | |    ..PS01166..  | |    ||||      || ||      |  |    ..  | ||        | |     | || |   |  |  |  |    |   | |  |       || ||                   |  |||||                 | |      |  |   |  |                            ||||     |  || ||| |  |                ..PS01166..         |  |           | |||             | *************       | |    | |      ||| |  | |     |   |     | |  | || |      |  ||     | |||    | || | | |               |  |            | |    | |||    |  ||   | ||||  ||                 | || | | |||||     | | | |               |  | |      | |   
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..||||  |||||||                    |    |  |  |      ..                              | |            ..         |  || ||| || ***** ||||  |                    |  |      |  | |         |  |  | |                    |  |         || ||| |    ***** | |   *****  |   |  | |   |     ..alphabetamotif..     |  |***** || | | |         |  |    *****||||   |  || ||          |   |*****      |*****|..   | ||| ||  |   |||||  ||||  |          |  *****  |     .. |  | || ||| ||  || |    | |    | |        |  ***** | |  |  |    |  |    |  |      | |   |   ||| ||||| ||       | |                  | |              || | |    ..alphabetamotif..  | |    ||||      || ||      |  |    ..  | ||        | |     | || |   |  |  |  |    |   | |  |       *****                   *****|||                 | |      |  |   |  |                            ||||     |  || ||| |  |                ..alphabetamotif..         |  |           | |||             |  |      | |         | |    | |      ||| |  | |     |   |     | |  | || |      *****     | |||    | || | | |               |  |            | |    | |||    *****   | |||*****                 | || | | |||||     | | | |               |  | |      | |   
search RasMol script viewer Motif-ligand binding stats  asxmotif ..||||  |||||||                    |    |  |  |      ..                              | |            ..         |  || ||| || |  || ||||  |                    |  |      |  | |         |  |  | |                    |  |         || ||| |    |  |  | |   |  ||  |   |  | *****     ..asxmotif..     |  ||  |  || | | |         |  |    |  | ||||   |  || ||          |   ||  |       ||  | |..   | ||| ||  |   |||||  ||||  |          |  || ||  |     .. |  | || ||| ||  || |    | |    | |        |  || |  | |  |  |    |  |    |  |      | |   |   ||| ||||| ||       | |                  | |              || | |    ..asxmotif..  | |    ||||      || ||      |  |    ..  | ||        | |     | || |   |  |  |  |    |   | |  |       || ||                   |  |||||                 | |      |  |   |  |                            ||||     |  || ||| |  |                ..asxmotif..         |  |           | |||             |  |      | |         | |    | |      ||| |  | |     |   |     | |  | || |      |  |      | |||    | || | | |               |  |            | |    | |||    |  |    | ||||  |                  | || | | |||||     | | | |               |  | |      | |   
search RasMol script viewer Motif-ligand binding stats  asxturn ..||||  |||||||                    |    |  |  |      ..                              | |            ..         |  || ||| || |  || ||||  |                    |  |      |  | |         |  |  | |                    |  |         || ||| |    |  |  ***   |  ||  |   |  |           ..asxturn..     |  ||  |  || | | |         |  |    |  | ||||   |  || ||          |   ||  |       ||  | |..   | ||| ||  |   |||||  ||||  |          |  || ||  |     .. |  | || ||| ||  || |    | |    | |        |  || |  | |  |  |    |  |    |  |      ***   |   ||| ||||***|       | |                  | |              || | |    ..asxturn..  | |    ||||      || ||      |  |    ..  ***|        | |     | || |   |  |  |  |    |   | |  |       || ||                   |  |||||                 | |      |  |   |  |                            ||||     |  || ||| |  |                ..asxturn..         |  |           | |||             |  |      | |         | |    | |      *** |  | |     |   |     | |  | || |      |  |      | |||    ***| | | |               |  |            | |    | |||    |  |    | ||||  |                  | || | | |||||     | | | |               |  | |      | |   
search RasMol script viewer Motif-ligand binding stats  betabulgeloop ..||||  |||||||                    |    |  |  |      ..                              | |            ..         |  || ||| || |  || ||||  |                    |  |      |  | |         |  |  | |                    |  |         || ||| |    |  |        |  ||  |   |  |           ..betabulgeloop..     |  ||  |  || | | |         |  |    |  | ||||   |  || ||          |   ||  |       ||  | |..   | ||| ||  |   |||||  ||||  |          |  || ||  |     .. |  | || ||| ||  || |    | |    | |        |  || |  | |  |  |    |  |    |  |            |   ||| |||||  |       | |                  | |              || | |    ..betabulgeloop..  | |    ||||      || ||      |  |    ..  |  |        | |     | || |   |  |  |  |    |   | |  |       || ||                   |  |||||                 | |      |  |   |  |                            ||||     |  || ||| |  |                ..betabulgeloop..         |  |           *****             |  |      | |         | |    | |       |  |  | |     |   |     | |  | || |      |  |      | |||       | | | |               |  |            | |    | |||    |  |    | ||||  |                  | || | | |||||     | | | |               |  | |      | |   
search RasMol script viewer Motif-ligand binding stats  betaturn ..||||  *******                    |    |  ****      ..                              | |            ..         ****| |****| ********||  |                    |  |      |  | |         |  |  | |                    ****         |****| |    ****        ********   ****           ..betaturn..     ********  || | | |         ****    *******||   |  ****|          |   |****       |**** |..   ********  |   |||||  |||****          |  ****|  |     .. |  | ****|| ||  || |    | |    | |        |  ******* |  |  |    |  |    ****            |   ||****|||  |       | |                  | |              **** |    ..betaturn..  | |    ||||      ****|      ****    ..  |  |        | |     **** |   ****  ****    |   | ****       ****|                   ****||||                 | |      ****   |  |                            ||||     ********| ****                ..betaturn..         ****           ****|             ****      | |         | |    | |       ****  | |     |   |     | |  | || |      ****      ****|       | | | |               ****            | |    ****|    ****    ****|****                  | || | | |||||     | | | |               **** |      | |   
search RasMol script viewer Motif-ligand binding stats  gammaturn ..***|                             |    |  |  |      ..                              | |            ..             | | |  |       | ||  |                    |  |      |  | |         |  |  ***                    |  |         |  | | |                                          ..gammaturn..            |  || | | |                      ||||   |  ||  |          |   |           |   ***..     |   |   |   |****  ***|             |   |  |  |     .. |  |  |  || ||  |***    | |    ***        |   |    | |  |  |    |  |                    |   ||  |||||  |       | |                  ***               |   |    ..gammaturn..  | |    ||||       |  |              ..  |  |        | |       |  |   |  |  |  |    |   |             |  |                       ||||                 ***             |  |                            ||||     |  |  | |                     ..gammaturn..                          | |             |  |      ***         | |    | |             | |     |   |     | |  | |***                  | |       | | | |                               | |      | |              | |                      ***| | ***||||     | | ***                  | |      | |   
search RasMol script viewer Motif-ligand binding stats  nest .. | |                             |    |  |  |      ..                              ***            ..             | | |  |       ***|  |                    |  |      |  | |         |  |                         |  |         |  *** |                                          ..nest..            |  || | | |                      ****   |  ||  |          |   |           |   ***..     |   |   |   ***    ****             |   |  |  |     .. |  |  |  |***|  |       ***               |   |    ***  |  |    |  |                    |   ||  ****|  |       ***                                    |   |    ..nest..  | |    ****       |  |              ..  |  |        | |       |  |   |  |  |  |    |   |             |  |                       ****                                 |  |                            ****     |  |  ***                     ..nest..                          ***             |  |                  | |    ***             ***     |   |     ***  | |                     ***       *** | |                               ***      ***              ***                         | |    ****     ***                      ***      | |   
search RasMol script viewer Motif-ligand binding stats  niche .. ***                             |    |  ****      ..                                             ..             *** ****          ****                    ****      ******         ****                         ****         |    ***                                          ..niche..            ******* | |                             ********          |   |           |   |  ..     |   |   |   |       ***             |   |  ****     .. ****  ****   ****       ***               |   |         ****    ****                    |   ||    | ****                                              |   |    ..niche..  | |               ****              ..  ****        ***       ****   ****  ****    |   |             ****                                                            ****                                     ****                          ..niche..                                          ****                  ***                            |   |          ***                                   ***                                                                                     ***                                               ***   
search RasMol script viewer Motif-ligand binding stats  schellmannloop ..                                 |    |            ..                                             ..                                                                                                                          ******                                            ..schellmannloop..                    | |                                               |   |           |   |  ..     |   |   |   |                       |   |           ..                                           |   |                                         |   |******                                                   |   |    ..schellmannloop..  | |                                 ..                                             |   |                                                                                                                                                    ..schellmannloop..                                                                                               |   |                                                                                                                                                                                                
search RasMol script viewer Motif-ligand binding stats  ststaple ..                                 ******            ..                                             ..                                                                                                                                                                            ..ststaple..                    | |                                               *****           *****  ..     *****   *****                       *****           ..                                           *****                                         *****                                                         *****    ..ststaple..  | |                                 ..                                             *****                                                                                                                                                    ..ststaple..                                                                                               *****                                                                                                                                                                                                
search RasMol script viewer Motif-ligand binding stats  stturn ..                                                   ..                                             ..                                                                                                                                                                            ..stturn..                    ***                                                                      ..                                                         ..                                                                                                                                                                ..stturn..  ***                                 ..                                                                                                                                                                                                      ..stturn..                                                                                                                                                                                                                                                                                                    

chain C : DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3
member of: CATH:search2.170.120.12/search3.30.1360.10GENE3D:searchG3DSA_2.170.120.12/searchG3DSA_3.30.1360.10PANTHER:searchPTHR11800/searchPTHR11800_SF2PFAM:searchPF01000/searchPF01193PROSITE PATTERNS:searchPS00446, SMART:searchSM00662SUPERFAMILY:searchSSF55257/searchSSF56553UniProt:searchP16370
JMol viewer RasMol script viewer  ZN 319C  ..                                                                                   * *   *  *                                                                                                                                                                             
sec str:  ......eeeeeee....eeeeee..hhhhhhhhhhhhhh...eeeeeeeee.......hhhhhhhhhhhh....hhhhhh................eeeee.........eee.....ee........................eee.......eeeeeeee.............eeee........................hhhhh....................eeee......hhhhhhhhhhhhhhhhhhhhhhhhhh....
sequence :  ..EEGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQD
seq num:  ..3         13        23        33        43        53        63        73        83        93        103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263   
search RasMol script viewer Motif-ligand binding stats  ASN_GLYCOSYLATION ..           | |      |  | |  || |  ||  |            ^***|    |  | | ||    || || |  || |   || ||                  |  |    |||| |  |  | | | ||    |                |  |||  |           | |||||   |   |||||  |  |  |          |||| |  |     ||||       |   |  ||   || |||  |  
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..           | |      |  | |  |^**  ||  |            | | |    |  | | ||    || || |  || |   || ||                  |  |    |||| |  |  | | | ||    |                |  |||  |           | |||||   |   ^**||  |  |  |          |||| |  |     ||||       |   |  ||   || |||  |  
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..           | |      ^*** |  |  |  ||  |            | | |    |  | | ||    || || |  || |   || ||                  |  |    |||| |  |  | | | ||    |                |  |||  |           | |||||   |   ^***|  |  |  |          |||| |  |     ||||       |   |  ||   || ||^***  
search RasMol script viewer Motif-ligand binding stats  TYR_PHOSPHO_SITE ..           | |         | |  |  |  ||  |            | | |    |  | | ||    || || |  || |   || ||                  |  |    |||| |  |  | | | ||    |                |  |||  |           | ||******^    |  |  |  |  |          |*******^     ||||       |   |  ||   || |||     
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..           | |         | |  |  |  ||  |            | | |    |  | | ||    || || |  || |   || ||                  |  |    |||| |  |  | | | |^*****                |  |||  |           | |||||        |  |  |  |  |          | || |        ||||       |   |  ||   || |||     
search RasMol script viewer Motif-ligand binding stats  RNA_POL_D_30KD ..           | |         | |  *****************************************    || || |  || |   || ||                  |  |    |||| |  |  | | | |                      |  |||  |           | |||||        |  |  |  |  |          | || |        ||||       |   |  ||   || |||     
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..           | |         | |  |  *****  |            | | |    |  | | |     || || |  || |   *****                  |  |    |||| |  |  | | | |                      *****|  |           | |||||        |  |  |  |  |          | || |        ||||       |   *****   *****|     
search RasMol script viewer Motif-ligand binding stats  asxturn ..           | |         ***  |  |  ||  |            | | |    |  | | |     || || |  || |   || ||                  |  |    ***| |  |  | *** |                      |  | |  |           | |||||        |  |  |  |  |          | || |        ||||       |   |  |    || | |     
search RasMol script viewer Motif-ligand binding stats  betaturn ..           | |              *******|  |            | | |    **** | |     ***** ****| |   ****|                  ****     | | |  |  | | | |                      **** |  |           | |||||        |  |  ****  |          | || |        ||||       |   ****    **** |     
search RasMol script viewer Motif-ligand binding stats  gammaturn ..           | |                     |  |            | | |         | |      |  |     | |    |  |                  |  |     | | |  |  | | | |                           |  |           ***||||        |  |     |  |          | |***        ||||       |   |        |   |     
search RasMol script viewer Motif-ligand binding stats  nest ..           | |                     |  |            | | |         | |      |  |     | |    |  |                  |  |     *** |  |  | | ***                           |  |              ****        |  |     |  |          | |           ****       |   |        |   |     
search RasMol script viewer Motif-ligand binding stats  niche ..           | |                     ****            *****         ***      ****     ***    ****                  ****         ****  ***                               ****                          ****     ****          ***            ***       |   |        |   |     
search RasMol script viewer Motif-ligand binding stats  ststaple ..           | |                                                                                                                                                                                                                                     *****        *****     
search RasMol script viewer Motif-ligand binding stats  stturn ..           ***                                                                                                                                                                                                                                                            

chain E : DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUN
member of: CATH:search3.40.1340.10/search3.90.940.20GENE3D:searchG3DSA_3.40.1340.10/searchG3DSA_3.90.940.20HAMAP:searchMF_00025PANTHER:searchPTHR10535PFAM:searchPF01191/searchPF03871PIRSF:searchPIRSF000747PRODOM:searchPD005155PROSITE PATTERNS:searchPS01110, SUPERFAMILY:searchSSF53036/searchSSF55287UniProt:searchP20434
sec str:  ......hhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh.......hhhhh..ee....hhhhhh.....eeeee....eehhhhhhhhhhhhhhhh..eeeeee..ee...hhhhh......eeeeee.hhhh.hhhhh.........hhhhhhhhhhhh..hhhhh.ee...hhhhhhhh......eeeeee.....eeeeeeee.
sequence :  ..DQENERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYRICM
seq num:  ..2         12        22        32        42        52        62        72        82        92        102       112       122       132       142       152       162       172       182       192       202       212 
search RasMol script viewer Motif-ligand binding stats  ASN_GLYCOSYLATION ..      ^***    | ||||    | |  |  |    |  |||  |       || ||     |  |   |  || |    | | |    | |        | |           |  |       | |   | |||    ^***|| |      |  ||      | | |  |   |  | ||| ||||  |       | || |  | |   
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..              | ^**|    | |  |  |    |  |||  |       || ||     |  |   |  || |    | | |    ^**        | |           |  |       | |   | |||     || || |      |  ||      | | |  |   |  | ||| ||||  |       | |^**  ^**   
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..              | ^***    | |  ^***    |  |||  |       || ||     |  |   |  || |    | | |               | |           |  |       | |   ^***|     |^*** |      ^***|      | | |  |   |  | ||| ||||  |       | |           
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..              |  ||     | |          |  |||  |       || ||     |  |   |  || |    | | |               | |           |  |       | |     | |     |  |  |      |  ||      | | |  |   |  | ||| |^*****       | |           
search RasMol script viewer Motif-ligand binding stats  RNA_POL_H_23KD ..              |  ||     | |          |  |||  |       || ||     |  |   |  || |    | | |               | |           |  |       | |     | |     |  **************|      | | |  |   |  | ||| ||||  |       | |           
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..              *****     | |          *****|  |       || ||     |  |   |  || |    | | |               | |           |  |       | |     | |     |  |  |      |   |      | | |  |   |  | ||| ||||  |       | |           
search RasMol script viewer Motif-ligand binding stats  asxturn ..              |  |      | |          |  | |  |       || ||     |  |   |  || |    | | |               | |           |  |       | |     ***     |  |  |      |   |      | | |  |   |  ***|| ||||  |       | |           
search RasMol script viewer Motif-ligand binding stats  betaturn ..              ****      | |          **** |  |       ****|     ****   |  || |    | | |               | |           ****       | |             ****  |      |   |      | | |  |   ****  |****|****       | |           
search RasMol script viewer Motif-ligand binding stats  gammaturn ..                        | |               |  |        |  |            |  |***    | | |               | |                      | |             |  |  |      |   |      | | |  |   |  |  |  | ||  |       | |           
search RasMol script viewer Motif-ligand binding stats  nest ..                        ***               |  |        |  |            |  |       | | |               ***                      | |             |  |  |      |   |      *** |  |   |  |  |  ***|  |       | |           
search RasMol script viewer Motif-ligand binding stats  niche ..                                          ****        ****            ****       *****                                        ***             *******      |   |          ****   ****  |    |****       | |           
search RasMol script viewer Motif-ligand binding stats  schellmannloop ..                                                                                                                                                           |   |                       ******           | |           
search RasMol script viewer Motif-ligand binding stats  stmotif ..                                                                                                                                                           *****                                        | |           
search RasMol script viewer Motif-ligand binding stats  stturn ..                                                                                                                                                                                                        ***           

chain F : DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUN
member of: CATH:search3.90.940.10GENE3D:searchG3DSA_3.90.940.10HAMAP:searchMF_00192PANTHER:searchPTHR10773PFAM:searchPF01192PIRSF:searchPIRSF000778/searchPIRSF500154PROSITE PATTERNS:searchPS01111, SUPERFAMILY:searchSSF63562UniProt:searchP20435
sec str:  ................hhhhhhhhhhhhhhhhhh............hhhhhhhhhhhh.....eeeee.....eeeee........
sequence :  ..KAIPKDQRATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVDL
seq num:  ..72        82        92        102       112       122       132       142       152 
search RasMol script viewer Motif-ligand binding stats  CAMP_PHOSPHO_SITE ..          | | |  ||       | ||||||     |             | |||  |       | |  | | |||    
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..          | | |  ||       | ||||||     |             | |||  |       | |  | | |||    
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..          | | ^***|       | ||||||     |             | |||  |       | ^*** ^***|    
search RasMol script viewer Motif-ligand binding stats  LEUCINE_ZIPPER ..          | | |  ||       | ||||||     **********************       | |      | |    
search RasMol script viewer Motif-ligand binding stats  RNA_POL_K_14KD ..          | | ***************|||||                   | |||          | |      | |    
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..          | | *****       |  |||||                   | |||          | |      | |    
search RasMol script viewer Motif-ligand binding stats  betaturn ..          | | ****|       |  ****|                   ****|          | |      | |    
search RasMol script viewer Motif-ligand binding stats  nest ..          | | |   |       |   |***                     ***          ***      | |    
search RasMol script viewer Motif-ligand binding stats  niche ..          *** |   |       |   |                                              ***    
search RasMol script viewer Motif-ligand binding stats  stmotif ..              *****       |   |                                                     
search RasMol script viewer Motif-ligand binding stats  ststaple ..                          *****                                                     

chain H : DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUN
member of: CATH:search2.40.50.140GENE3D:searchG3DSA_2.40.50.140PANTHER:searchPTHR10917/searchPTHR10917_SF0PFAM:searchPF03870PIRSF:searchPIRSF000779SMART:searchSM00658SUPERFAMILY:searchSSF50249UniProt:searchP20436
sec str:  .......eeeeeeeeee.......eeeeeee......eeeeee...........eeeee..........................eeee.eeeeee......eeeeeee..eeeeeeehhhhhh.......eeeee.
sequence :  ..SNTLFDDIFQVSEVDPGRYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTVTIASSL..TRSWRPPQAGDRSLADDYDYVMYGTAYKFEEVSKDLIAVYYSFGGLLMRLEGNYRNLNNLKQENAYLLIRR
seq num:  ..2         12        22        32        42        52          ..76        86        96        106       116       126       136        
search RasMol script viewer Motif-ligand binding stats  ASN_GLYCOSYLATION ..  |  |     || |||||  |       | || |      ||| |  |  |          ..  | |  ||| ||| | | |                               ||  ||  | | |       
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..  |  |     || |||||  |       | || |      ||| |  |  |          ..  ^**  ||| ||| | | |                               ||  ||  | | |       
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..  ^***     ^***||||  |       ^*** |      ||| |  |  |          ..       ||| |^*** | |                               ||  ||  | | |       
search RasMol script viewer Motif-ligand binding stats  TYR_PHOSPHO_SITE ..           || |||||  |         |  |      ||| |  |  |          ..       ||| ********^                               ||  ||  | | |       
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..           || |||||  |         |  |      ||| |  |  |          ..       ||| | | | |                                 ^*****  | | |       
search RasMol script viewer Motif-ligand binding stats  asxturn ..           || |||||  |         |  |      *** |  |  |          ..       ||| | | | |                                  |  |   | | |       
search RasMol script viewer Motif-ligand binding stats  betabulge ..           ** |||||  |         |  |       |  |  |  |          ..       ||| | | | |                                  |  |   | | |       
search RasMol script viewer Motif-ligand binding stats  betaturn ..              |||||  |         |  |       |  |  |  |          ..       ||| | | | |                                  ****   | | |       
search RasMol script viewer Motif-ligand binding stats  gammaturn ..              ****|  |         |  |       |  |  |  |          ..       ||| | *** |                                         | | |       
search RasMol script viewer Motif-ligand binding stats  nest ..                  |  |         |  |       |  |  |  |          ..       *** |   | |                                         | | |       
search RasMol script viewer Motif-ligand binding stats  niche ..                  ****         ****       ****  ****          ..        ****   ***                                         *****       

chain I : DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9
member of: CATH:search2.20.25.10GENE3D:searchG3DSA_2.20.25.10PANTHER:searchPTHR11239/searchPTHR11239_SF1PFAM:searchPF01096/searchPF02150PIRSF:searchPIRSF005586PROSITE PATTERNS:searchPS00466/searchPS01030, PROSITE PROFILES:searchPS51133, SMART:searchSM00440/searchSM00661SUPERFAMILY:searchSSF57783UniProt:searchP27999
JMol viewer RasMol script viewer  ZN 204I  ..                                                                         *  *                        *  *              
JMol viewer RasMol script viewer  ZN 203I  ..     *  *                  *  *                                          |  |                        |  |              
sec str:  ...............eeeee....eeeee......eee....eeee.............hhhhhh...................................eee......eee.........
sequence :  ..TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQKNKRTQ
seq num:  ..2         12        22        32        42        52        62        72        82        92        102       112      
search RasMol script viewer Motif-ligand binding stats  CAMP_PHOSPHO_SITE .. | ||   | |         | |       ||  |   | |    | || |      | |||||  |  | |||  | |       | | **^*       |  | | || |  |    
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE .. ^**|   | |         | |       ||  |   | |    | || |      | |||||  |  ^**||  | |       | | |  |       |  | | || |  |    
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..    |   | |         | |       |^***   | |    | || |      | |||||  |  ^***|  | |       | | |  |       |  | | || |  |    
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..    |   | |         | |       |       | |    | || |      | ||^*****      |  | |       | | |  |       |  | | || |  |    
search RasMol script viewer Motif-ligand binding stats  ZF_TFIIS_1 ..    |   | |         | |       |       | |    | || |      | || ||  |      ^**^************************^**^****| |  |    
search RasMol script viewer Motif-ligand binding stats  RNA_POL_M_15KD ..    ***************************       | |    | || |      | || ||  |         | |       | | |  |          | |  | |  |    
search RasMol script viewer Motif-ligand binding stats  betaturn ..        | |         | |               | |    | || |      ******|  |         | |       | | |  |          | |  | |  |    
search RasMol script viewer Motif-ligand binding stats  gammaturn ..        | |         | |               | |    | || |         |  |  |         | |       | ***  |          | |  | |  |    
search RasMol script viewer Motif-ligand binding stats  nest ..        ***         ***               | |    | || |         |  |  |         ***       | | |  |          ***  | |  |    
search RasMol script viewer Motif-ligand binding stats  niche ..                                      ***    ******         *******                   | | ****               ******    
search RasMol script viewer Motif-ligand binding stats  stturn ..                                                                                      ***                              

chain J : DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUN
member of: CATH:search1.10.10.60GENE3D:searchG3DSA_1.10.10.60HAMAP:searchMF_00250PANTHER:searchPTHR23413PFAM:searchPF01194PIRSF:searchPIRSF005653PRODOM:searchPD006539PROSITE PATTERNS:searchPS01112, SUPERFAMILY:searchSSF46924UniProt:searchP22139
JMol viewer RasMol script viewer  ZN 101J  ..         *                                  **                   
sec str:  .................hhhhhhhhhhhh.....hhhhhh....hhhhhhhhhh...hhhhhh....
sequence :  ..MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKFLRYNP
seq num:  ..1         11        21        31        41        51        61   
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE .. |    |  |||               | |  |    || |    |  || ^***|  || ||  
search RasMol script viewer Motif-ligand binding stats  MYRISTYL .. |    |  |||               | |  ^*****| |    |  ||  |  |  || ||  
search RasMol script viewer Motif-ligand binding stats  RNA_POL_N_8KD .. *****^**^*|               | |        | |    |  ||  |  |  || ||  
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..         | |               | |        | |    |  ||  |  ***** ||  
search RasMol script viewer Motif-ligand binding stats  betaturn ..         | |               | |        | |    ****|  |  *******|  
search RasMol script viewer Motif-ligand binding stats  nest ..         ***               ***        ***        |  |      |  |  
search RasMol script viewer Motif-ligand binding stats  niche ..                                                 ****      ****  

chain K : DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11
member of: CATH:search3.30.1360.10GENE3D:searchG3DSA_3.30.1360.10PANTHER:searchPTHR13946/searchPTHR13946_SF27PFAM:searchPF13656PROSITE PATTERNS:searchPS01154, SUPERFAMILY:searchSSF55257UniProt:searchP38902
sec str:  ......hhhhhh........eeeee......eeeeee......hhhhhhhhh.....eeeeeee.........eeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..
sequence :  ..MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTL
seq num:  ..1         11        21        31        41        51        61        71        81        91        101       111 
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..     |  |   |  |       |  |  |    |              |  |  |||      || |         |  |            |  |||   ^***||| ||  
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..     |  |   |  |       |  |  |    |              |  |  |||      || |         |  |            |  ||^*****  ||| ||  
search RasMol script viewer Motif-ligand binding stats  RNA_POL_L_13KD ..     |  |   |  |       |  |  |    ******************************** |         |  |            |  |||   |   ||| ||  
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..     |  |   |  |       |  |  |                   |  |  |||      |  |         |  |            *****|   |   ||| ||  
search RasMol script viewer Motif-ligand binding stats  betabulge ..     |  |   |  |       |  |  |                   |  |  |**      |  |         |  |            |  | |   |   ||| ||  
search RasMol script viewer Motif-ligand binding stats  betaturn ..     ****   |  |       |  |  |                   |  |  |        |  |         |  |            **** |   |   |****|  
search RasMol script viewer Motif-ligand binding stats  niche ..            ****       *******                   *******        ****         ****                 |   |   | ****  
search RasMol script viewer Motif-ligand binding stats  ststaple ..                                                                                                  *********       

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