triangle PDBeMotif: 3bx7  
  coner Sequences coner   coner 3D motifs coner   coner Ligand environment coner   coner Ligand bonds coner
   
coner
   Search  |  PDB header search  |  Upload PDB file  |  Molecule binding  |  Pair bonds  |  Motif binding  |  3D environment  |  Motif inclusion  
coner
Download original PDB file
Download xml file
Download structure factors file
Classification de novo protein, protein binding    | release date: Fri, Jan 11, 2008
Title engineered human lipocalin 2 (lcn2) in complex with the extracellular domain of human ctla-4
Authors A.SKERRA, D.L.SCHONFELD, L.CHATWELL
Method X-RAY DIFFRACTION (resolution: 2.10Å)
PDBe Citation   
Ligand bond colours:   *  covalent   *  ionic   *  hydrogen   *  electrostatic   *  van-der-waals   *  plane-atom   *  plane-plane   *  undefined  - Click here to show 5Å bonds
Chain C sequence:
MHVAQPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQ
GLRAMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPCPDSD
Chain A sequence:
QDSTSDLIPAPPLSKVPLQQNFQDNQFHGKWYVVGLAGNRILRDDQHPMNMYATIYELKEDKSYNVTSVISSHKKCEYTI
ATFVPGSQPGEFTLGNIKSYGDKTSYLVRVVSTDYNQYAVVFFKLAEDNAEFFAITIYGRTKELASELKENFIRFSKSLG
LPENHIVFPVPIDQCIDG
Residue colours:  hydrophilic   hydrophobic   intermediate 
Assembly 1     View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain C : CYTOTOXIC T-LYMPHOCYTE-ASSOCIATED ANTIGEN 4
sec str:  .........eee......eeeeee........eeeeeeeeee..eeeeeeeeee.............eeeeee..eeeeee...hhhhheeeeeeeeeee....eeee...eeee.......
sequence :  ..MHVAQPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPC
seq num:  ..3         13        23        33        43        53        63        73        83        93        103       113       
search RasMol script viewer Motif-ligand binding stats  PS00001 ..           | |||          |  |         |  |   ||    | ||  |||| | | |    |  ^***  ||| ||| |  |   ||      |  ^***      | |
search RasMol script viewer Motif-ligand binding stats  PS00005 ..           ^**||          |  |         |  |   ||    | ||  |||| | | |    |     |  ||| ||| |  |   ||      |    |       | |
search RasMol script viewer Motif-ligand binding stats  PS00006 ..           | |||          |  |         |  |   ||    | ||  ^*** | | |    |     |  ||| ||| |  |   ||      |    |       | |
search RasMol script viewer Motif-ligand binding stats  PS00007 ..           | |||          |  |         |  |   ||    | ||   ||  | | |    |     |  |*******^  |   ||      |    |       | |
search RasMol script viewer Motif-ligand binding stats  PS00008 ..           | |||          |  |         |  |   ||    | ^*****|  | | ^*****     |  ||| ||^*****   ||      ^*****       | |
search RasMol script viewer Motif-ligand binding stats  betabulge ..           | |||          |  |         |  |   **    |  |    |  | |            |  ||| ||         **                   | |
search RasMol script viewer Motif-ligand binding stats  betabulgeloop ..           *****          |  |         |  |         |  |    |  | |            |  ||| ||                              | |
search RasMol script viewer Motif-ligand binding stats  betaturn ..           ****|          |  |         ****         ****    |  | |            |  |****|                              | |
search RasMol script viewer Motif-ligand binding stats  gammaturn ..           | | |          |  |                      |  |    |  | |            |  | |  |                              ***
search RasMol script viewer Motif-ligand binding stats  nest ..           | ***          |  |                      |  |    |  | |            |  | |  |                                 
search RasMol script viewer Motif-ligand binding stats  niche ..           | | |          ****                      ****    ******            **** ****                                 
search RasMol script viewer Motif-ligand binding stats  stmotif ..           *****                                               | |                                                      
search RasMol script viewer Motif-ligand binding stats  stturn ..           ***                                                 ***                                                      

chain A : ENGINEERED HUMAN LIPOCALIN 2
sec str:  ........hhhhh......hhhhhheeeeeeeeee..............eeeeee.....eeeeeeeee..eeeeeeeeeee.....eeee.hhhhh....eeeeeeeee....eeeeeeeeee..eeeeeeeeee.....hhhhhhhhhhhhhhh..hhh.ee...........
sequence :  ..DLIPAPPLSKVPLQQNFQDNQFHGKWYVVGLAGNRILRDDQHPMNMYATIYELKEDKSYNVTSVISSHKKCEYTIATFVPGSQPGEFTLGNIKSYGDKTSYLVRVVSTDYNQYAVVFFKLAEDNAEFFAITIYGRTKELASELKENFIRFSKSLGLPENHIVFPVPIDQCIDG
seq num:  ..6         16        26        36        46        56        66        76        86        96        106       116       126       136       146       156       166          
search RasMol script viewer Motif-ligand binding stats  PS00001 ..|      |  |    |    | |     ||  | ||  | |||     |  |   | | ^***   | |           | |  |   |  ||||| | |    |||||||                                      || ||| | ||     | |||| 
search RasMol script viewer Motif-ligand binding stats  PS00005 ..|      |  |    |    | |     ||  | ||  | |||     |  |   | |        ^**           | |  |   |  ||||| | |    |||||||                                      || ||| | ||     | |||| 
search RasMol script viewer Motif-ligand binding stats  PS00006 ..*      |  |    |    | |     ||  | ||  | |||     ^***   | |                      | |  |   |  |^*** | |    |||||||                                      || ||| | ||     | |||| 
search RasMol script viewer Motif-ligand binding stats  PS00007 ..       |  |    |    | |     ||  | ||  | |||            | |                      | |  |   |  ********^    |||||||                                      || ||| | ||     | |||| 
search RasMol script viewer Motif-ligand binding stats  PS00008 ..       |  |    |    | |     |^*****|  | |||            | |                      ^*****   ^*****|  |      |||||||                                      || |^*****|     | |||| 
search RasMol script viewer Motif-ligand binding stats  PS00213 ..       |  |    **************|  |  |  | |||            | |                        |  |         |  |      |||||||                                      || ||| |  |     | |||| 
search RasMol script viewer Motif-ligand binding stats  asxmotif ..       |  |         | |     ||  |  |  *****            | |                        |  |         |  |      |||||||                                      || ||| |  |     | |||| 
search RasMol script viewer Motif-ligand binding stats  asxturn ..       |  |         | |     ||  |  |  ***|             ***                        |  |         |  |      |||||||                                      || ||| |  |     | |||| 
search RasMol script viewer Motif-ligand binding stats  betabulge ..       |  |         | |     **  |  |  |  |             | |                        |  |         |  |      **|||||                                      || ||| |  |     | |||| 
search RasMol script viewer Motif-ligand binding stats  betaturn ..       ****         | |         |  |  ****             | |                        ****         |  |        |||||                                      *****| |  |     | |||| 
search RasMol script viewer Motif-ligand binding stats  gammaturn ..       |  |         | |         |  |                   | |                        |  |         |  |        |***|                                      |  | | |  |     | ***| 
search RasMol script viewer Motif-ligand binding stats  nest ..       |  |         | |         |  |                   ***                        |  |         |  |        |****                                      |  *** |  |     | |*** 
search RasMol script viewer Motif-ligand binding stats  niche ..       ****         ***         ****                                              ****         ****        | |                                        |    | ****     ***    
search RasMol script viewer Motif-ligand binding stats  schellmannloop ..                                                                                                           | |                                        ******                 
search RasMol script viewer Motif-ligand binding stats  stturn ..                                                                                                           ***                                                               

   New search    3bx7:  Sequences  |  3D motifs  |  Ligand environment  |   Ligand bonds   |  PDB  |  XML  |  Structure factors