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Classification protein binding    | release date: Fri, Oct 30, 2009
Title tab2 nzf domain in complex with lys63-linked tri-ubiquitin, p212121
Authors A.BREMM, D.KOMANDER, K.HOFMANN, M.AKUTSU, Y.KULATHU
Method X-RAY DIFFRACTION (resolution: 3.00Å)
PDBe Citation   
Small molecules:    search ZN ZN binding statistics ZN
Ligand bond colours:   *  covalent   *  ionic   *  hydrogen   *  electrostatic   *  van-der-waals   *  plane-atom   *  plane-plane   *  undefined  - Click here to show 5Å bonds
Chains A,B sequence:
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Chain C sequence:
DEGAQWNCTACTFLNHPALIRCEQCEMPRHF
Residue colours:  hydrophilic   hydrophobic   intermediate 
Assembly 1     View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain A : UBIQUITIN
member of: CATH:search3.10.20.90GENE3D:searchG3DSA_3.10.20.90PANTHER:searchPTHR10666/searchPTHR10666_SF94PFAM:searchPF00240PROSITE PATTERNS:searchPS00299, PROSITE PROFILES:searchPS50053, SMART:searchSM00213SUPERFAMILY:searchSSF54236UniProt:searchP0CH28
sec str:  ...eeeee.....eeeee.....hhhhhhhhhhhh...hhh.eeeee..ee................eeeeee.
sequence :  ..MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
seq num:  ..1         11        21        31        41        51        61          
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..        ^**      |  ||   ||         || ||         || ||  || ||  |       
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..        | |      |  ||   ||         || ||         || |^***| ||  |       
search RasMol script viewer Motif-ligand binding stats  UBIQUITIN_1 ..        | |      |  ||   |************************** |    | ||  |       
search RasMol script viewer Motif-ligand binding stats  betaturn ..        | |      |  ||   |          ****|         |  |    | ||  |       
search RasMol script viewer Motif-ligand binding stats  nest ..        ***      |  ||   |           |  |         |  |    ***|  |       
search RasMol script viewer Motif-ligand binding stats  niche ..                 ****|   |           ****         ****       ****       
search RasMol script viewer Motif-ligand binding stats  stmotif ..                     *****                                              

chain B : UBIQUITIN
member of: CATH:search3.10.20.90GENE3D:searchG3DSA_3.10.20.90PANTHER:searchPTHR10666/searchPTHR10666_SF94PFAM:searchPF00240PROSITE PATTERNS:searchPS00299, PROSITE PROFILES:searchPS50053, SMART:searchSM00213SUPERFAMILY:searchSSF54236UniProt:searchP0CH28
sec str:  ...eeeee.....eeeee.....hhhhhhhhhhhhhh.hhhhh.eee..ee................eeee.
sequence :  ..MQIFVKT..GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
seq num:  ..1      ..10        20        30        40        50        60         
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..       ..**      |  ||   ||      | ||| ||          |  |  || ||  |     
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..       ..        |  ||   ||      | ||| ||          |  ^***| ||  |     
search RasMol script viewer Motif-ligand binding stats  UBIQUITIN_1 ..       ..        |  ||   |**************************      | ||  |     
search RasMol script viewer Motif-ligand binding stats  betaturn ..       ..        ****|   |       | |****|                 | ||  |     
search RasMol script viewer Motif-ligand binding stats  nest ..       ..        |  ||   |       *** |  |                 ***|  |     
search RasMol script viewer Motif-ligand binding stats  niche ..       ..        ****|   |           ****                    ****     
search RasMol script viewer Motif-ligand binding stats  stmotif ..       ..            *****                                            

chain C : MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE7-INTERACTING PROTEIN 2;
member of: PANTHER:searchPTHR10351/searchPTHR10351_SF27PFAM:searchPF00641PROSITE PATTERNS:searchPS01358, PROSITE PROFILES:searchPS50199, SMART:searchSM00547SUPERFAMILY:searchSSF90209UniProt:searchQ9NYJ8
JMol viewer RasMol script viewer  ZN 1694C  ..                              
sec str:  ................................
sequence :  ..EGAQWNCTACTFLNHPALIRCEQCEMPRHF
seq num:  ..664       674       684       
search RasMol script viewer Motif-ligand binding stats  ASN_GLYCOSYLATION .. |  |^***| |  |  |     | || | 
search RasMol script viewer Motif-ligand binding stats  MYRISTYL .. ^*****  | |  |  |     | || | 
search RasMol script viewer Motif-ligand binding stats  ZF_RANBP2_1 ..    ******************** || | 
search RasMol script viewer Motif-ligand binding stats  nest ..         ***  |  |     ***| | 
search RasMol script viewer Motif-ligand binding stats  niche ..              ****        *** 

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