triangle PDBeMotif: 2o8c  
  coner Sequences coner   coner 3D motifs coner   coner Ligand environment coner   coner Ligand bonds coner
   
coner
   Search  |  PDB header search  |  Upload PDB file  |  Molecule binding  |  Pair bonds  |  Motif binding  |  3D environment  |  Motif inclusion  
coner
AstexViewer TM
Download original PDB file
Download xml file
Download structure factors file
Classification dna binding protein/dna    | release date: Tue, Dec 12, 2006
Title human mutsalpha (msh2/msh6) bound to adp and an o6-methyl-gu mispair
Authors A.CHANGELA, J.J.WARREN, L.S.BEESE, P.L.MODRICH, T.J.POHLHAUS
Method X-RAY DIFFRACTION (resolution: 3.37Å)
PDBe Citation   
Small molecules:    search MG MG binding statistics MG   search ADP ADP binding statistics ADP
Modified residues:  search 6OG 6OG binding statistics 6OG
Ligand bond colours:   *  covalent   *  ionic   *  hydrogen   *  electrostatic   *  van-der-waals   *  plane-atom   *  plane-plane   *  undefined  - Click here to show 5Å bonds
Chain A sequence:
MAVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVL
SKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAYKASPGNLSQFEDILFGNNDMSASIGVVGVKMSAVDGQRQ
VGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIIQRGGILITERKKADFSTKDIYQD
LNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKLDIAAVRALNLFQGSVEDT
TGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAAN
LQDCYRLYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSE
LREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLN
EEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILKASRHA
CVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLK
GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNL
HVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEFQYIGESQGYDIMEPAAKKCYLEREQG
EKIIQEFLSKVKQMPFTEMSEENITIKLKQLKAEVIAKNNSFVNEIISRIKVTT
Chain B sequence:
MGSAPQNSESQAHVSGGGDDSSRPTVWYHETLEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKS
QNFDLVICYKVGKFYELYHMDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRK
MAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKEEDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRH
CSRFRTLVAHYPPVQVLFEKGNLSKETKTILKSSLSCSLQEGLIPGSQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQV
LKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAV
TLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDL
ERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISLQTKNP
EGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRNRYQ
LEIPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLD
VLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMG
GKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRG
TATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSY
GFNAARLANLPEEVIQKGHRKAREFEKMNQSLRLFREVCLASERSTVDAEAVHKLLTLIKEL
Residue colours:  hydrophilic   hydrophobic   intermediate 
Assembly 1     View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain A : DNA MISMATCH REPAIR PROTEIN MSH2
member of: GENE3D:searchG3DSA_1.10.1420.10/searchG3DSA_3.40.50.300PANTHER:searchPTHR11361/searchPTHR11361_SF35PFAM:searchPF00488/searchPF01624/searchPF05188/searchPF05190/searchPF05192PIRSF:searchPIRSF005813PROSITE PATTERNS:searchPS00486, SMART:searchSM00533/searchSM00534SUPERFAMILY:searchSSF48334/searchSSF52540UniProt:searchP43246
JMol viewer RasMol script viewer  ADP 936A  ..                                                                                                            ..                            ..            ..                                                                                      ..ADP ..                                                                      ..                                                                                                                                                                                                                                                                                                                                 *     * **                   ** ****                                    ..ADP ..                                                                                            *                                        
JMol viewer RasMol script viewer  MG 935A  ..                                                                                                            ..                            ..            ..                                                                                      ..MG ..                                                                      ..                                                                                                                                                                                                                                                                                                                                 |     | ||                   || ||*|                                    ..MG ..                                                                                            |                                        
sec str:  .............hhhhhhhhhhhhhh.......eeeeee...eeeeehhhhhhhhhhh..hhhhheee.......eeeeeeehhhhhhhhhhhhhh...eeeeeee..........eeeeee.....................eeeeeee.......eeeeeeee....eeeeeeee....hhhhhhhhhhh...eeee......hhhhhhhhhhhh...eeee.................... ..................hhhhhhhhhhhhhhhhhhhh............hhhhh.eehhhhhhhhh...........hhhhhhh...hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhh.hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhh.hhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeee.....eeeee.............eeeeee....eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.......eee.....eeeeeee...............eeeeee.....eeeee.....hhhhhhhhhhhhhhhhh........eeeee...eeeeee.... ....hhhhhhhhhhhhh......eeeee......hhhhhhhhhhhhhhhhhhh...eeeee.......hhhhhh..eeeeeeeeee....eeeeeeeee......hhhhhhhhh..hhhhhhhhhhhhhhhhh..
sequence :  ..MAVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAG..SKENDWYLAYKASPGNLSQFEDILFGNN..IGVVGVKMSAVD..QRQVGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIIQRGGILITERKKADFSTKDIYQDLNR... ..GKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKLDIAAVRALNLFQGS..TGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVG... ..STFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEFQ
seq num:  ..1         11        21        31        41        51        61        71        81        91        101     ..112       122       132     ..145         ..158       168       178       188       198       208       218       228       238   ... ..247       257       267       277       287       297       307       ..321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701          ... ..723       733       743       753       763       773       783       793       803       813       823       833       843          
search RasMol script viewer Motif-ligand binding stats  ASN_GLYCOSYLATION ..    | |     |  |      |  |   |  | |   | |                | ||| |        | |     |   |          | |         |.. |    | ||     ^*** |       ..    |   || |..         |  | |          |||| |              |  | ||           |   |||||| || ||| |  | ..PS00001..  |    | | |  |  |   |           | | | |   | |  ||  |          ||||  |..          | | |   |          | |          |  ||   |   |  | || ||           | |                          | | ||  |                  ||||||||                 ^***                      |||  ||||    | |       | ||  |     ^*** |    |    |    |  |    ^*** |         | ^***       |  |         || |||  |            ||||          |  |             ||||      || ||||| |   |    |  || | | |     |  |      |..PS00001..     |   | |   | |  |       | | |  || |    | |   | | |     | |         |  |        |  |    | |     | |||||   | | |                   
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..    | |     |  |      |  |   |  ^**   | |                | ||| |        | |     |   |          | |         |.. |    | ||       |  |       ..    |   || |..         |  | |          |||| |              |  | ||           |   ^**||| |^**|| |  | ..PS00005..  |    | | |  |  |   |           | | | |   | |  ||  |          ||||  |..          | | |   |          | |          |  ||   |   |  | || ||           | |                          | | ||  |                  ||||||||                                           |||  ||||    | |       ^**|  |       |  |    |    |    |  |      |  |         |   |        |  |         || |||  |            ||||          |  |             ||||      || ||||| |   |    |  || | | |     |  |      |..PS00005..     |   | |   | |  |       | | |  || |    | |   | | |     | |         |  |        |  |    | |     | |||||   | | |                   
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..    | |     ^***      |  |   |  |     | |                | ||| |        | |     |   |          | |         |.. |    | ||       ^***       ..    |   ^***..         |  | |          ||^***              |  ^***           |    | ||| |^***| |  | ..PS00006..  |    | | |  |  |   |           | | | |   | ^***|  |          ||||  ^..          | | |   |          | |          |  ||   |   ^*** || ||           | |                          | | ||  |                  ||||^***                                           |||  ||||    | |       ^***  |       ^***    |    |    ^***      ^***         |   |        ^***         || |||  |            ||||          |  |             ||||      || ||||| |   |    |  || | | |     ^***      |..PS00006..     |   | |   | |  |       | | ^***| |    | |   | | |     | |         |  |        ^***    | |     | |||||   | | |                   
search RasMol script viewer Motif-ligand binding stats  TYR_PHOSPHO_SITE ..    | |               |  |   |  |     | |                | ||| |        | |     |   |          | |         |..******^ ||                  ..    |    |  ..         |  | |          ||||                |    |            |    | ||| || | | |  | ..PS00007..  |    | | |  |  |   |           | | | |   | |   |  |          ||||   ..          | | |   |          | |          |  ||   |   |    || ||           | |                          | | ||  |                  |||||||                                            |||  ||||    | |       | ||  |               |    |                           |   |                     || |||  |            ||||          |  |             ||||      || ||||| |   |    |  || | | |               |..PS00007..     |   | |   | |  |       | |     | |    | |   | | |     | |         |  |                | |     | |||||   | | |                   
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..    | |               |  |   |  |     | |                | ||| |        | |     |   |          | |         ^..**      ||                  ..    ^*****  ..         |  | |          ||||                ^*****            ^***** ||| || | | |  | ..PS00008..  |    | | |  |  |   |           | | | |   | |   |  |          ||||   ..          | | |   |          | |          |  ||   |   |    || ||           | |                          | | ||  |                  |||||||                                            |^*****||    | |       | ||  |               ^*****                           |   |                     || |||  |            ||||          |  |             ||||      || |^*****   |    |  || | | |               ^..PS00008..     |   | |   | |  |       | |     | ^***** |   | | |     | |         |  |                | |     | |||^***** | |                   
search RasMol script viewer Motif-ligand binding stats  AMIDATION ..    | |               |  |   |  |     | |                | ||| |        | |     |   |          | |          ..        ||                  ..            ..         |  | |          ||||                                         ||| || | | |  | ..PS00009..***    | | |  |  |   |           | | | |   | |   |  |          ||||   ..          | | |   |          | |          |  ||   |   |    || ||           | |                          | | ||  |                  |||||||                                            | |  | ||    | |       | ||  |                                                |   |                     || |||  |            ||||          |  |             ||||      || ||||| |   |    |  || | | |                ..PS00009..     |   | |   | |  |       | |     |        |   | | |     | |         |  |                | |     | |||||     | |                   
search RasMol script viewer Motif-ligand binding stats  RGD ..    | |               |  |   |  |     ***                | ||| |        | |     |   |          | |          ..        ||                  ..            ..         |  | |          ||||                                         ||| || | | |  | ..PS00016..       | | |  |  |   |           | | | |   | |   |  |          ||||   ..          | | |   |          | |          |  ||   |   |    || ||           | |                          | | ||  |                  |||||||                                            | |  | ||    | |       | ||  |                                                |   |                     || |||  |            ||||          |  |             ||||      || ||||| |   |    |  || | | |                ..PS00016..     |   | |   | |  |       | |     |        |   | | |     | |         |  |                | |     | |||||     | |                   
search RasMol script viewer Motif-ligand binding stats  ATP_GTP_A ..    | |               |  |   |  |                        | ||| |        | |     |   |          | |          ..        ||                  ..            ..         |  | |          ||||                                         ||| || | | |  | ..PS00017..       | | |  |  |   |           | | | |   | |   |  |          ||||   ..          | | |   |          | |          |  ||   |   |    || ||           | |                          | | ||  |                  |||||||                                            | |  | ||    | |       | ||  |                                                |   |                     || |||  |            ||||          |  |             ||||      ******** |   |    |  || | | |                ..PS00017..     |   | |   | |  |       | |     |        |   | | |     | |         |  |                | |     | |||||     | |                   
search RasMol script viewer Motif-ligand binding stats  DNA_MISMATCH_REPAIR_2 ..    | |               |  |   |  |                        | ||| |        | |     |   |          | |          ..        ||                  ..            ..         |  | |          ||||                                         ||| || | | |  | ..PS00486..       | | |  |  |   |           | | | |   | |   |  |          ||||   ..          | | |   |          | |          |  ||   |   |    || ||           | |                          | | ||  |                  |||||||                                            | |  | ||    | |       | ||  |                                                |   |                     || |||  |            ||||          |  |             ||||       | ||||| |   |    |  || | | |                ..PS00486..     |   | |   | |  *****************        |   | | |     | |         |  |                | |     | |||||     | |                   
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..    | |               |  |   |  |                        | ||| |        | |     |   |          | |          ..        ||                  ..            ..         |  | |          ||||                                         ||| || | | |  | ..alphabetamotif..       | | |  |  |   |           | | | |   | |   |  |          ||||   ..          | | |   |          | |          *****   |   |    || ||           | |                          | | ||  |                  ||*****                                            | |  | ||    | |       | ||  |                                                |   |                     *****|  |            ||||          |  |             ||||       | ||||| |   |    |  || | | |                ..alphabetamotif..     |   | |   | |  |       | |              |   | | |     | |         |  |                | |     | |||||     | |                   
search RasMol script viewer Motif-ligand binding stats  betabulge ..    | |               |  |   |  |                        | ||| |        | |     |   |          | |          ..        **                  ..            ..         |  | |          ||||                                         ||| || | | |  | ..betabulge..       | | |  |  |   |           | | | |   | |   |  |          ||||   ..          | | |   |          | |          |  |    |   |    || ||           | |                          | | ||  |                  |||||||                                            | |  | ||    | |       | ||  |                                                |   |                     || | |  |            ||||          |  |             ||||       | ||||| |   |    |  || | | |                ..betabulge..     |   | |   | |  |       | |              |   | | |     | |         |  |                | |     | |||||     | |                   
search RasMol script viewer Motif-ligand binding stats  betabulgeloop ..    | |               |  |   |  |                        | ||| |        | |     |   |          | |          ..                            ..            ..         ******          ||||                                         ||| || | | |  | ..betabulgeloop..       | | |  |  |   |           | | | |   | |   |  |          ||||   ..          | | |   |          | |          |  |    |   |    || ||           | |                          | | ||  |                  |||||||                                            | |  | ||    | |       | ||  |                                                |   |                     || | |  |            ||||          |  |             ||||       | ||||| |   |    |  || | | |                ..betabulgeloop..     |   | |   | |  |       | |              |   | | |     | |         |  |                | |     | |||||     | |                   
search RasMol script viewer Motif-ligand binding stats  betaturn ..    | |               |  |   |  |                        | ||| |        | |     |   |          | |          ..                            ..            ..            | |          ||||                                         ||| || | | |  | ..betaturn..       | | ****  |   |           | | | |   | |   |  |          ||||   ..          | | |   |          | |          ****    |   |    ****|           | |                          | | |****                  ||****|                                            | |  | ||    | |       | ||  |                                                |   |                     **** |  |            ||||          |  |             ||||       ****||| |   |    ****| | | |                ..betaturn..     |   | |   | |  |       | |              |   | | |     | |         |  |                | |     | |||||     | |                   
search RasMol script viewer Motif-ligand binding stats  gammaturn ..    | |               |  |   |  |                        | ||| |        | |     |   |          | |          ..                            ..            ..            | |          ||||                                         *** |***** |  | ..gammaturn..       ***       |   |           | | | |   | |   |  |          ||||   ..          | | |   |          | |                  |   |     |  |           | |                          | | |                      || ||||                                            | |  | ||    | |       ***|  |                                                |   |                      |   |  |            ||||          |  |             ***|         ||||| |   |        | | ***                ..gammaturn..     |   | |   | |  |       | |              |   | | |     | |         |  |                | |     | |||||     | |                   
search RasMol script viewer Motif-ligand binding stats  nest ..    | |               |  |   |  |                        ***|| |        | |     |   |          ***          ..                            ..            ..            ***          ****                                          |  |      |  | ..nest..                 |   |           | | ***   | |   |  |          ****   ..          | | |   |          | |                  |   |     |  |           ***                          *****                      || ||||                                            ***  ***|    | |          |  |                                                |   |                      |   |  |            ****          |  |              ***         ***** |   |        ***                    ..nest..     |   | |   | |  |       ***              |   | ***     | |         |  |                ***     | |****     ***                   
search RasMol script viewer Motif-ligand binding stats  niche ..    ***               ****   ****                          |****        ***     |   |                       ..                            ..            ..                                                                       ****      **** ..niche..                 |   |           ***       ***   ****                 ..          *** |   |          ***                  |   |     ****                                                                   || ****                                                 ****    | |          ****                                                |   |                      |   ****                          ****                                |   |                               ..niche..     |   | |   | ****                        |   |         ***         ****                        ***                               
search RasMol script viewer Motif-ligand binding stats  stmotif ..                                                           | |                  *****                       ..                            ..            ..                                                                                      ..stmotif..                 |   |                                                ..              *****                               |   |                                                                            ||  ||                                                          | |                                                              |   |                      |   |                                                                 |   |                               ..stmotif..     |   | |   |                             |   |         | |                                                                       
search RasMol script viewer Motif-ligand binding stats  ststaple ..                                                           | |                                              ..                            ..            ..                                                                                      ..ststaple..                 *****                                                ..                                                  *****                                                                            ******                                                          | |                                                              *****                      *****                                                                 *****                               ..ststaple..     ***** *****                             *****         | |                                                                       
search RasMol script viewer Motif-ligand binding stats  stturn ..                                                           ***                                              ..                            ..            ..                                                                                      ..stturn..                                                                      ..                                                                                                                                                                                                   ***                                                                                                                                                                                                   ..stturn..                                                           ***                                                                       

chain B : DNA MISMATCH REPAIR PROTEIN MSH6
member of: GENE3D:searchG3DSA_1.10.1420.10/searchG3DSA_3.40.1170.10/searchG3DSA_3.40.50.300PANTHER:searchPTHR11361/searchPTHR11361_SF31PFAM:searchPF00488/searchPF01624/searchPF05188/searchPF05190/searchPF05192PIRSF:searchPIRSF037677PROSITE PATTERNS:searchPS00486, SMART:searchSM00533/searchSM00534SUPERFAMILY:searchSSF48334/searchSSF52540/searchSSF55271UniProt:searchP52701
JMol viewer RasMol script viewer  ADP 202B  ..                                                                                                                                                                                             ..ADP ..                                                                                                    ..                                                                  ..ADP ..                                                                                                                                                                                                              ..ADP ..                                                         ..                                                                                                          ..ADP ..   **               ..         ********                                    ..                                                                                   ..ADP ..   *                                                
JMol viewer RasMol script viewer  MG 102B  ..                                                                                                                                                                                             ..MG ..                                                                                                    ..                                                                  ..MG ..                                                                                                                                                                                                              ..MG ..                                                         ..                                                                                                          ..MG ..   ||               ..         ||||||*|                                    ..                                                                                   ..MG ..   |                                                
sec str:  ......hhhhhhhhh........................hhhhhh..hhhhhhhhhhhhhh...eeeeee..eeeeehhhhhhhhhhhh.........eeeee..hhhhhhhhhhhhh..eeeeee..hhhhhhhhhhh....hhhhh...eeeeeee....................eeeeeeeee....... ....eeeeeeee......eeeeeeee...hhhhhhhhhhh.eeeeeee....hhhhhhhhh......eeeee.......hhhhhhhhhhhh................hhhhhhhh..........hhhhhhhhhhhhhhhhhhhhh.hhhhhhh...eee............. ..........hhhhhhhh.............hhhhhhh...hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh.............hhhhhhhhhh..hhhhhhhh............ ..hhhhhhhhhhhhhhhhhhhhhh...........eee.hhhhh.eeee.............eeeeee..eeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........ee.........eeeeee....... ........eeeee..............eeee......hhhhhhhhhhhhhhhhh........eeee.....eeee....hhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhhhh...eeeee..hhhhhhhh.....ee..ee...... .......ee......hhhhhhhhhh..hhhhhhhhhhhhhhh.....hhhhhh.
sequence :  ..PTVWYHETLEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKVGKFYELYHMDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKEEDSS... ..HTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETKTILKSSLSCSLQEGLIPGSQFWDASKTLRTLLEEEYFREKLSDGI..VMLPQVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVS... ..KAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGF... ..SDYDQALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRNRYQLEIPENFTTRNLP..EYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGSRHPC... ..GDDFIPNDILIGCEEEEQEN..KAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLG..STFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACM... ..TFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQSLRLFRE
seq num:  ..362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542      ... ..552       562       572       582       592       602       612       622       632       642       ..653       663       673       683       693       703       713   ... ..728       738       748       758       768       778       788       798       808       818       828       838       848       858       868       878       888       898       908       918       928   ... ..935       945       955       965       975       985    ..993       1003      1013      1023      1033      1043      1053      1063      1073      1083      1093  ... ..1105      1115      ..1126      1136      1146      1156      1166         ..1188      1198      1208      1218      1228      1238      1248      1258         ... ..1284      1294      1304      1314      1324        
search RasMol script viewer Motif-ligand binding stats  ASN_GLYCOSYLATION ..     |  ||  || || | ||||  |  ||  |   |  || ||             |  |            |  |       | |                          | |             |  ||  |   | || |         || ||| | ||    |^***   | ||      ..PS00001..             | |          ||||  |              |^***   |   | |  |  ||    |   |   | ||  ||||| || |   ..       |  ||| |  | |  |                  ||||   | |||             ..PS00001..|| |           |||| ^***  || |  |  | | | ||||                                      || ||   |   |   |  |   |  | |  |        | |      |  |               |  | |    |  |                     |  |  |   |   | |   ..PS00001..| ||       |   |  |          |  |   | |  |     | ^***|   ..     | |                           | ||             |   |  |            ^***             |  |     |  |    ..PS00001..          | |       .. | |    || ||||| |            | | | |     |  |       ..     | | | | |  || ||       | |     |    |        ||||     | | |  |    | |         ..PS00001..  | |                 | |                  ^***|    
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..     |  ||  || || | ||||  |  ||  |   |  || ||             |  |            |  |       | |                          | |             |  ||  |   | || |         || ||| | ||    | |     ^**|      ..PS00005..             | |          ||||  |              | |     |   | |  |  ||    |   |   ^**|  ||||| || |   ..       |  ||| |  | |  |                  ||||   | |||             ..PS00005..|| |           ||||  |    || |  |  | | | ||||                                      || ||   |   |   |  |   |  | |  |        ^**      |  |               |  | |    |  |                     |  |  |   |   ^**   ..PS00005..| ||       |   |  |          |  |   | |  |     | | ^**   ..     ^**                           ^**|             |   |  |                             |  |     |  |    ..PS00005..          | |       .. | |    || ||||| |            | | | |     |  |       ..     | | | | |  || ||       | |     |    |        ^**|     | | |  |    | |         ..PS00005..  | |                 | |                    ^**    
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..     |  ||  || || | ||||  |  ||  |   |  || ||             |  |            |  |       | |                          | |             |  ||  |   ^*** |         || ||| ^***    | |     ^***      ..PS00006..             | |          ||||  |              | |     |   | |  ^***|    |   |   | |^***|||| || |   ..       |  |^***  | ^***                  ||||   | |||             ..PS00006..|| |           ||||  |    || ^***  | | | ||||                                      || ||   |   |   |  |   |  | |  |                 ^***               |  | |    |  |                     ^***  |   |     |   ..PS00006..^***       |   ^***          |  |   | |  |     | |       ..                                   ^***             |   ^***                             |  |     |  |    ..PS00006..          | |       .. | |    || ||||| |            | | | |     ^***       ..     | | | | |  || ||       | |     |    |         | |     | | ^***    | |         ..PS00006..  | |                 | |                           
search RasMol script viewer Motif-ligand binding stats  TYR_PHOSPHO_SITE ..     |  ||  || || | ||||  |  ||  |   |  || ||             |  |            |  |       | |                          | |             |  ||  |     |  |         || ||| | ||    | |               ..PS00007..             | |          ||||  |              | |     |   | |  |   |    |   |   | *******^| || |   ..       |  | | |  |    |                  ||||   | |||             ..PS00007..|| |           ||||  |    || |  |  | | | ||||                                      || ||   |   |   |  |   |  | |  |                                    |  | |    |  |                           |   |     ****..PS00007..**^        |   |             |  |   | |  |     | |       ..                                                    |   |                                |  |     |  |    ..PS00007..          | |       .. | |    || ||||| |            | | | |                ..     | | | | |  || ||       | |     |    |         | |     | |         | |         ..PS00007..  | |                 | |                           
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..     |  ||  || || | ||||  |  ||  |   |  || ||             |  |            |  |       | |                          | |             |  ||  |     |  |         || ||| | ||    | |               ..PS00008..             | |          ||||  |              | |     |   | |  |   ^*****   |   |      |||| || |   ..       |  | | |  ^*****                  ||||   | |||             ..PS00008..*| |           ||||  ^*****| |  |  | | | ||||                                      || ||   |   |   |  |   |  | |  |                                    |  | |    |  |                           |   |         ..PS00008..           |   |             |  |   ^*****     | |       ..                                                    |   |                                |  |     |  |    ..PS00008..          | |       .. | |    || |^*****            | | | |                ..     | | | | |  || ||       | |     ^*****         | |     | |         | |         ..PS00008..  | |                 | |                           
search RasMol script viewer Motif-ligand binding stats  AMIDATION ..     |  ||  || || | ||||  |  ||  |   |  || ||             |  |            |  |       | |                          | |             |  ||  |     |  |         || ||| | ||    | |               ..PS00009..             | |          ||||  |              | |     |   | |  |            |   |      |||| || |   ..       |  | | |                          ||||   | |||             ..PS00009.. | |           ||||        | |  |  | | | ^***                                      || ||   |   |   |  |   |  | |  |                                    |  | |    |  |                           |   |         ..PS00009..           |   |             |  |     |  |     | |       ..                                                    |   |                                |  |     |  |    ..PS00009..          | |       .. | |    || |||||              | | | |                ..     | | | | |  || ||       | |     |              | |     | |         | |         ..PS00009..  | |                 | |                           
search RasMol script viewer Motif-ligand binding stats  ATP_GTP_A ..     |  ||  || || | ||||  |  ||  |   |  || ||             |  |            |  |       | |                          | |             |  ||  |     |  |         || ||| | ||    | |               ..PS00017..             | |          ||||  |              | |     |   | |  |            |   |      |||| || |   ..       |  | | |                          ||||   | |||             ..PS00017.. | |           ||||        | |  |  | | |  ||                                       || ||   |   |   |  |   |  | |  |                                    |  | |    |  |                           |   |         ..PS00017..           |   |             |  |     |  |     | |       ..                                                    |   |                                |  |     |  |    ..PS00017..          | |       .. | |    ********              | | | |                ..     | | | | |  || ||       | |     |              | |     | |         | |         ..PS00017..  | |                 | |                           
search RasMol script viewer Motif-ligand binding stats  DNA_MISMATCH_REPAIR_2 ..     |  ||  || || | ||||  |  ||  |   |  || ||             |  |            |  |       | |                          | |             |  ||  |     |  |         || ||| | ||    | |               ..PS00486..             | |          ||||  |              | |     |   | |  |            |   |      |||| || |   ..       |  | | |                          ||||   | |||             ..PS00486.. | |           ||||        | |  |  | | |  ||                                       || ||   |   |   |  |   |  | |  |                                    |  | |    |  |                           |   |         ..PS00486..           |   |             |  |     |  |     | |       ..                                                    |   |                                |  |     |  |    ..PS00486..          | |       .. | |     | |||||              | | | |                ..     | | | | |  || |*****************              | |     | |         | |         ..PS00486..  | |                 | |                           
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..     |  ||  ***** | ||||  |  ||  |   ***** ||             |  |            |  |       | |                          | |             *****  |     |  |         || ||| | ||    | |               ..alphabetamotif..             | |          ||||  |              | |     |   | |  |            |   |      |||| || |   ..       |  | | |                          ||||   | |||             ..alphabetamotif.. | |           ||||        | |  |  | | *****                                       || ||   |   |   |  |   |  | |  |                                    |  | |    |  |                           |   |         ..alphabetamotif..           |   |             |  |     |  |     | |       ..                                                    |   |                                |  |     |  |    ..alphabetamotif..          | |       .. | |     | |||||              | | | |                ..     | | | | |  || ||       | |                    | |     | |         | |         ..alphabetamotif..  | |                 | |                           
search RasMol script viewer Motif-ligand binding stats  asxmotif ..     |  ||  || || | ||||  |  ||  |   |  || ||             |  |            |  |       | |                          | |             |  ||  |     |  |         || ||| | ||    | |               ..asxmotif..             | |          ||||  |              | |     |   | |  |            *****      |||| || |   ..       |  | | |                          ||||   | |||             ..asxmotif.. | |           ||||        | |  |  | | |  ||                                       || ||   |   |   |  |   |  | |  |                                    |  | |    |  |                           |   |         ..asxmotif..           |   |             |  |     |  |     | |       ..                                                    |   |                                |  |     |  |    ..asxmotif..          | |       .. | |     | |||||              | | | |                ..     | | | | |  || ||       | |                    | |     | |         | |         ..asxmotif..  | |                 | |                           
search RasMol script viewer Motif-ligand binding stats  betabulgeloop ..     |  ||  || || *****|  |  ||  |   |  || ||             |  |            |  |       | |                          | |             |  ||  |     |  |         || ||| | ||    | |               ..betabulgeloop..             | |          ||||  |              | |     |   | |  |            |   |      |||| || |   ..       |  | | |                          ||||   | |||             ..betabulgeloop.. | |           ||||        | |  |  | | |  ||                                       || ||   |   |   |  |   |  | |  |                                    |  | |    |  |                           |   |         ..betabulgeloop..           |   |             |  |     |  |     | |       ..                                                    |   |                                |  |     |  |    ..betabulgeloop..          | |       .. | |     | |||||              | | | |                ..     | | | | |  || ||       | |                    | |     | |         | |         ..betabulgeloop..  | |                 | |                           
search RasMol script viewer Motif-ligand binding stats  betaturn ..     |  ||  ****| ****|****  ||  |   ********             |  |            ****       | |                          | |             ****|  |     |  |         ****|| | ||    | |               ..betaturn..             | |          ||||  |              | |     |   | ****            |   |      |||| || |   ..       |  | | |                          ||||   ****|             ..betaturn.. | |           ||||        | |  |  | | ****|                                       *****   |   |   |  |   |  | |  |                                    |  | |    |  |                           |   |         ..betaturn..           |   |             |  |     |  |     | |       ..                                                    |   |                                |  |     |  |    ..betaturn..          | |       .. | |     ****|||              | | | |                ..     | | | | |  || ||       | |                    | |     | |         | |         ..betaturn..  | |                 | |                           
search RasMol script viewer Motif-ligand binding stats  gammaturn ..     |  ||  ||  |   | ||  |  ||  |       |  |             |  |                       | |                          | |                 |  |     |  |          |  || | ||    | |               ..gammaturn..             | |          ||||  |              | |     |   |                 |   |      |||| || |   ..       |  | | |                          ||||     | |             ..gammaturn.. ***           ||||        | |  |  | | |   |                                        |  |   |   |   |  |   |  | |  |                                    |  | |    |  |                           |   |         ..gammaturn..           |   |             |  |     |  |     ***       ..                                                    |   |                                |  |     |  |    ..gammaturn..          ***       .. | |       |||||              | | ***                ..     | | | | |  || ||       | |                    | |     | |         ***         ..gammaturn..  | |                 | |                           
search RasMol script viewer Motif-ligand binding stats  nest ..     |  ||  ||  |   ***|  |  ||  |       |  |             |  |                       ***                          ***                 |  |     |  |          |  |*** ||    | |               ..nest..             ***          ****  |              | |     |   |                 |   |      **** || |   ..       |  | ***                          ****     ***             ..nest..               ****        | |  |  | | |   |                                        |  |   |   |   |  |   |  | |  |                                    |  | |    |  |                           |   |         ..nest..           |   |             |  |     |  |               ..                                                    |   |                                |  |     |  |    ..nest..                    .. ***       *****              ***                    ..     | | | | |  || ||       ***                    ***     | |                     ..nest..  ***                 ***                           
search RasMol script viewer Motif-ligand binding stats  niche ..     ************      ***********       ****             ****                                                                        ****     ****          ****  ****    ***               ..niche..                            |   |              ***     |   |                 |   |         ******   ..       ****                                                       ..niche..                           ***  **** ***   |                                        ****   |   |   ****   **** ****                                    ******    ****                           |   |         ..niche..           |   |             ****     ****               ..                                                    |   |                                ****     ****    ..niche..                    ..                                                     ..     | | | | ********                                      ***                     ..niche..                                                    
search RasMol script viewer Motif-ligand binding stats  stmotif ..                                                                                                                                                                   | |                       ..stmotif..                            |   |                      |   |                 |   |                  ..                                                                  ..stmotif..                                       *****                                               |   |                                                                                                |   |         ..stmotif..           |   |                                         ..                                                    |   |                                                 ..stmotif..                    ..                                                     ..     | | | |     | |                                       | |                     ..stmotif..                                                    
search RasMol script viewer Motif-ligand binding stats  ststaple ..                                                                                                                                                                   | |                       ..ststaple..                            *****                      *****                 *****                  ..                                                                  ..ststaple..                                                                                           *****                                                                                                *****         ..ststaple..           *****                                         ..                                                    *****                                                 ..ststaple..                    ..                                                     ..     *******     | |                                       | |                     ..ststaple..                                                    
search RasMol script viewer Motif-ligand binding stats  stturn ..                                                                                                                                                                   ***                       ..stturn..                                                                                                    ..                                                                  ..stturn..                                                                                                                                                                                                              ..stturn..                                                         ..                                                                                                          ..stturn..                    ..                                                     ..                 ***                                       ***                     ..stturn..                                                    

chain E : 5'-D(*GP*AP*AP*CP*CP*GP*CP*(6OG)P*CP*GP*CP*TP*AP*
sec str:  .................
sequence :  ..GAACCGCGCGCTAGG
seq num:  ..1         11   

chain F : 5'-D(*CP*CP*TP*AP*GP*CP*GP*TP*GP*CP*GP*GP*TP*TP*C
sec str:  .................
sequence :  ..CCTAGCGTGCGGTTC
seq num:  ..16        26   

   New search    2o8c:  Sequences  |  3D motifs  |  Ligand environment  |   Ligand bonds   |  SPICE view  |  PDB  |  XML  |  Structure factors