triangle PDBeMotif: 2hd5  
  coner Sequences coner   coner 3D motifs coner   coner Ligand environment coner   coner Ligand bonds coner
   
coner
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coner
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Enzyme   3.1.2.15
Classification hydrolase    | release date: Tue, Jun 20, 2006
Title usp2 in complex with ubiquitin
Authors M.KROEMER, M.RENATUS
Method X-RAY DIFFRACTION (resolution: 1.85Å)
PDBe Citation   
Small molecules:    search ZN ZN binding statistics ZN
Ligand bond colours:   *  covalent   *  ionic   *  hydrogen   *  electrostatic   *  van-der-waals   *  plane-atom   *  plane-plane   *  undefined  - Click here to show 5Å bonds
Chain A sequence:
MNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPS
EFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVG
QLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKI
LVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSS
VTPMSSSQVRTSDAYLLFYELASPPSRMAAALEHHHHHH
Chain B sequence:
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Residue colours:  hydrophilic   hydrophobic   intermediate 
Assembly 1     View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain A : UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2
member of: CATH:search3.90.70.10GENE3D:searchG3DSA_2.20.210.10PANTHER:searchPTHR24006/searchPTHR24006_SF396PFAM:searchPF00443PROSITE PATTERNS:searchPS00972/searchPS00973, PROSITE PROFILES:searchPS50235, SUPERFAMILY:searchSSF54001UniProt:searchO75604
JMol viewer RasMol script viewer  ZN 201A  ..                                        ..                                                                      ..                                    *  *                  ..ZN ..                       *  *                                                                                                                        
sec str:  ......ee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh.....ee.hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh...hhhhhhhheeeeeeeee.....eeeeeeee..eeee..... ...hhhhhhhhhh..eeehhhhh.ee....ee..eeeeeeeee...eeeeeee......................ee.hhhh.......eeeeeeeeeeee....eeeeeeee......eeeee..eeeeehhhhh....eeeeeeee.
sequence :  ..QGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRD..GSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRV..HLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIA... ..VTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELA
seq num:  ..211       221       231       241       ..249       259       269       277       285       295       305       ..313       313       318       328       338       348     ... ..358       368       378       387       397       407       419       429       438       450       460       470       480       490       515    
search RasMol script viewer Motif-ligand binding stats  ASN_GLYCOSYLATION .. | ||  | || |      |||  |        ||||   ..  | |           ||| |||  |  | ||        || ||     |   |         |  |  ..           |  || || |   |  ||    | |  || |  |  |          ..PS00001.. |  ||| | || |   |  |     ||| |   | || ||         | ||     | || |     |  | || || |      |      ^***| | |||        | |  | ^***    | ||||    ||      
search RasMol script viewer Motif-ligand binding stats  CAMP_PHOSPHO_SITE .. | ||  | || |      |||  |        ||||   ..  | |           ||| |||  |  | ||        || ||     |   |         |  |  ..           |  || || |   |  ||    | |  || |  |  |          ..PS00004.. |  ||| | || |   |  |     ||| |   **^* ||         **^*     | || |     |  | || || |      |         || | |||        | |  | || |    | ||||    ||      
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE .. | ||  | || |      |||  |        ||||   ..  | |           ||| |||  |  | ||        || ||     |   |         |  |  ..           |  || || |   |  ||    | |  || |  |  |          ..PS00005.. |  ||| | || |   |  |     ||| |        ||                  ^**| |     |  | || || |      |         || | |||        | |  | || |    | ||||    ||      
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE .. | ||  | || |      |||  |        ||||   ..  | |           ||| ||^***  ^***        || ||     |   |         |  |  ..           |  || || |   |  ||    | ^***| |  ^***          ..PS00006.. ^***|| | ^***   |  |     ||| |        ||                     | |     |  | || || |      |         || | |||        | |  ^*** |    | ||||    ||      
search RasMol script viewer Motif-ligand binding stats  MYRISTYL .. | ||  | || |      |||  |        ||||   ..  | |           ||| |||  |  | |         || ||     |   |         |  |  ..           |  || || |   |  |^*****     | |                ..PS00008.. |   || | ||     |  |     ||| |        ||                     | |     |  | || || |      |         ^*****||        | |    || |    | ||||    ||      
search RasMol script viewer Motif-ligand binding stats  AMIDATION .. | ||  | || |      |||  |        ||||   ..  | |           ||| |||  |  | |         || ||     |   |         |  |  ..           |  || || |   |  |           | |                ..PS00009.. |   || | ||     |  |     |^***        ||                     | |     |  | || || |      |          | |  ||        | |    || |    | ||||    ||      
search RasMol script viewer Motif-ligand binding stats  USP_1 .. | |********^*******||  |        ||||   ..  | |           ||| |||  |  | |         || ||     |   |         |  |  ..           |  || || |   |  |           | |                ..PS00972.. |   || | ||     |  |     | |          ||                     | |     |  | || || |      |          | |  ||        | |    || |    | ||||    ||      
search RasMol script viewer Motif-ligand binding stats  USP_2 .. | |   | || |       ||  |        ||||   ..  | |           ||| |||  |  | |         || ||     |   |         |  |  ..           |  || || |   |  |           | |                ..PS00973.. |   || | ||     |  |     | |          ||                     | |     |  | || || |      ****************^*        | |    || |    | ||||    ||      
search RasMol script viewer Motif-ligand binding stats  alphabetamotif .. | |   | || |       ||  |        ||||   ..  | |           ||| |||  |  | |         || ||     |   |         |  |  ..           ******** |   |  |           | |                ..alphabetamotif.. |   || | ||     |  |     | |          ||                     | |     |  | || || |                 | |  |         | |    || |    | ||||    ||      
search RasMol script viewer Motif-ligand binding stats  asxmotif .. | |   | || |       ||  |        ||||   ..  | |           ||| |||  |  | |         || ||     *****         |  |  ..           |  || || |   |  |           | |                ..asxmotif.. |   || | ||     |  |     | |          ||                     | |     |  | || || |                 | |  |         | |    || |    | ||||    ||      
search RasMol script viewer Motif-ligand binding stats  asxturn .. | |   ***| |       ||  |        ||||   ..  ***           ||| |||  |  | |         || ||                   |  |  ..           |  || || |   |  |           | |                ..asxturn.. |   || | ||     |  |     | |          ||                     | |     |  | || || |                 | |  |         | |    || |    | ||||    ||      
search RasMol script viewer Motif-ligand binding stats  betabulge .. | |   |  | |       ||  |        ||||   ..  | |           ||| |||  |  | |         || ||                   |  |  ..           |  || || |   |  |           | |                ..betabulge.. |   || | ||     |  |     | |          **                     | |     |  | || || |                 | |  |         | |    || |    | ||||    **      
search RasMol script viewer Motif-ligand binding stats  betaturn .. | |   |  | |       |****        ||||   ..  | |           ||| ||****  | |         *****                   |  |  ..           *******| |   |  |           | |                ..betaturn.. |   || | ||     |  |     | |                                 | |     |  | ****| |                 | |  |         | |    ****    ****||            
search RasMol script viewer Motif-ligand binding stats  nest .. ***   |  ***       ||  |        ****   ..  | |           ||| |||  |  | |                                 |  |  ..               |  | |   |  |           ***                ..nest.. |   || | ||     |  |     ***                                 | |     |  |  |  | |                 | |  |         ***    || |    | | ||            
search RasMol script viewer Motif-ligand binding stats  niche .. ***   |    |       |****               ..  ***           ||********  | |                                 ****  ..               **** |   ****                              ..niche.. |   || ****     ****                                         ***     ****  ******                 | |  |         | |    |***    | ****            
search RasMol script viewer Motif-ligand binding stats  stmotif ..       |    |       |   |               ..                ||  ||      | |                                       ..                    *****                                 ..stmotif.. *****|   |                                                                                        | |  |         | |    |       *****             
search RasMol script viewer Motif-ligand binding stats  ststaple ..       |    |       *****               ..                ******      | |                                       ..                                                          ..ststaple..      *****                                                                                        | |  |         | |    |       | |               
search RasMol script viewer Motif-ligand binding stats  stturn ..       |    |                           ..                            ***                                       ..                                                          ..stturn..                                                                                                   ***  |         ***    |       ***               
search RasMol script viewer Motif-ligand binding stats  Catalytic site ..       *    *                           ..                                                                      ..                                                          ..REP00000..                                                                                                        *                *                         

chain B : POLYUBIQUITIN
member of: CATH:search3.10.20.90GENE3D:searchG3DSA_3.10.20.90PANTHER:searchPTHR10666/searchPTHR10666_SF94PFAM:searchPF00240PROSITE PATTERNS:searchPS00299, PROSITE PROFILES:searchPS50053, SMART:searchSM00213SUPERFAMILY:searchSSF54236UniProt:searchP0CH28
sec str:  ...eeeee.....eeeee.....hhhhhhhhhhhhhh......eeee..ee.....hhhhhh.....eeeee......
sequence :  ..MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
seq num:  ..1         11        21        31        41        51        61        71    
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..        ^**      |  ||   ||      | ||| ||   |  |  || || ||||||  |           
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..        | |      |  ||   ||      | ||| ||   |  |  || |^***||||  |           
search RasMol script viewer Motif-ligand binding stats  UBIQUITIN_1 ..        | |      |  ||   |************************** |  | ||||  |           
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..        | |      |  ||   |       | |*****   |  |  |  |  | ||||  |           
search RasMol script viewer Motif-ligand binding stats  betaturn ..        | |      ****|   |       | |****|   ****  ****  ****||  |           
search RasMol script viewer Motif-ligand binding stats  nest ..        ***      |  ||   |       *** |  |         |  |    ***|  |           
search RasMol script viewer Motif-ligand binding stats  niche ..        | |      ****|   |           ****         ****       ****           
search RasMol script viewer Motif-ligand binding stats  stmotif ..        | |          *****                                                  
search RasMol script viewer Motif-ligand binding stats  stturn ..        ***                                                                 

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