triangle PDBeMotif: 1zqb  
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Classification transferase/dna    | release date: Fri, Apr 12, 1996
Title dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with seven base pairs of dna; soaked in the presence of bacl2 (150 millimolar)
Authors H.PELLETIER, M.R.SAWAYA
Method X-RAY DIFFRACTION (resolution: 3.20Å)
PDBe Citation   
Small molecules:    search BA BA binding statistics BA
Ligand bond colours:   *  covalent   *  ionic   *  hydrogen   *  electrostatic   *  van-der-waals   *  plane-atom   *  plane-plane   *  undefined  - Click here to show 5Å bonds
Chain A sequence:
MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG
KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD
IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ
LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF
DYIQWKYREPKDRSE
Residue colours:  hydrophilic   hydrophobic   intermediate 
Assembly 1     View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain A : PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7))
member of: CATH:search1.10.150.110/search1.10.150.20/search3.30.210.10/search3.30.460.10GENE3D:searchG3DSA_1.10.150.20/searchG3DSA_1.10.8.310/searchG3DSA_3.30.210.10/searchG3DSA_3.30.460.10PANTHER:searchPTHR11276PFAM:searchPF10391/searchPF14716/searchPF14791/searchPF14792PRINTS:searchDNAPOLX/searchDNAPOLXBETAPROSITE PATTERNS:searchPS00522, SMART:searchSM00278/searchSM00483SUPERFAMILY:searchSSF47802/searchSSF81301/searchSSF81585UniProt:searchP06746
JMol viewer RasMol script viewer  BA 342A  ..                                                   * *  *                                                                                                                                                                                                                                                                              
JMol viewer RasMol script viewer  BA 341A  ..                                                   | |  |                                   * *  *                                                                                                                                                                                                                                     
JMol viewer RasMol script viewer  BA 340A  ..                                                   | |  |                                   | |  |                                                                                   * *                                                                                                                                               
sec str:  ......hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh......hhhhhhh.....hhhhhhhhhhhhh...hhhhhhhh.hhhhhhhhhhh.....hhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh....eeeeehhhhhh......eeeeee...........hhhhhhhhhhhhh...eeee......eeeeee.............eeeeee...hhhhhhhhhhhh..hhhhhhhhhhhhh..eeee..eeee...............hhhhhhhh......hhh...
sequence :  ..ETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRSE
seq num:  ..9         19        29        39        49        59        69        79        89        99        109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329    
search RasMol script viewer Motif-ligand binding stats  ASN_GLYCOSYLATION ..       |   |       ^*** |            |  |     |  ||| |  ||    |       | |      |  | | |    |  | ||   |      | | |  |    |  |           || ||  |  ||           |  | ||     ||||||| | || |    ||||  |||||| |||     || ||||    |  |          || |   |          |  |    | | |||||           | ||  | | |  |  |         | ||  | |||          
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..       |   |          | |            |  |     |  ||| |  ||    |       ^**      |  | | |    |  | ||   |      | | |  |    |  |           || ||  |  ||           |  | ||     |^**||| | || |    ||||  |^**|| |||     || ||||    |  |          || |   |          |  |    | | |||||           | ||  | ^**  |  |         ^**|  | |||          
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..       |   |          | |            |  |     ^***|| |  ||    |                |  | | |    |  | ||   |      | | ^***    |  |           || ||  |  ||           |  | ||     | | ||| ^*** |    ||||  |||||| |||     || ||||    ^***          ^***   |          |  |    | | ^***|           | |^***      |  |         ^***  | |||          
search RasMol script viewer Motif-ligand binding stats  TYR_PHOSPHO_SITE ..       |   |          | |            |  |         || |  ||    |                |  | | |    |  | ||   |      | |         |  |           || ||  |  ||           ******^     | | |||   || |    ||||  |||||| |||     || ||||                   ******^          |  |    | | ||| |           | |          |  |               | |||          
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..       |   |          | |            |  |         || |  |^*****                |  | | |    |  | ^*****      | |         |  |           || ||  |  ||              | ||     | | |^*****| |    ||||  |||||| |||     || ||||                                    |  |    | | ||| |           | |          |  |               | |||          
search RasMol script viewer Motif-ligand binding stats  DNA_POLYMERASE_X ..       |   |          | |            |  |         || |  |                      |  | | |    |  |  |          | |         |  |           || ||  |  ||              | ||     ****^******^*^******||  |||||| |||     || ||||                                    |  |    | | ||| |           | |          |  |               | |||          
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..       |   |          | |            |  |         || |  |                      |  | | |    |  |  |          | |         |  |           || ||  *****              | ||       | |||           | ||  |||||*****     || ||||                                    |  |    | | ||| |           | |          |  |               | |||          
search RasMol script viewer Motif-ligand binding stats  asxmotif ..       |   |          | |            |  |         || |  |                      |  *****    |  |  |          | |         |  |           || ||  |  |               | ||       | |||           | ||  |||||| ||      || ||||                                    |  |    | | ||| |           | |          |  |               | |||          
search RasMol script viewer Motif-ligand binding stats  asxturn ..       |   |          | |            |  |         || |  |                      |  *** |    |  |  |          | |         |  |           || ||  |  |               ***|       | |||           | ||  |||||| ||      || ||||                                    |  |    | | ||| |           | |          |  |               | |||          
search RasMol script viewer Motif-ligand binding stats  betaturn ..       |   |          | |            |  |         ****  |                      |  |   |    |  |  |          | |         |  |           ****|  ****               |  |       ****|           ****  ||||*****      |****||                                    ****    | ****| |           | |          ****               ****|          
search RasMol script viewer Motif-ligand binding stats  gammaturn ..       |   |          ***            |  |          | |  |                      |  |   |    |  |  |          | |         |  |            |  |                     |  |         | |           | ||  ****           |  ||||                                            |   | | |           | |                               | |          
search RasMol script viewer Motif-ligand binding stats  nest ..       |   |                         |  |          | |  |                      |  |   |    |  |  |          ***         |  |            |  |                     |  |         ***           | ||   |             |  ****                                            |   | | |           ***                               ***          
search RasMol script viewer Motif-ligand binding stats  niche ..       |   |                         ****          ******                      ****   |    *******                      ****            ****                     ****                       ****   |             |    |                                             |   | | |                                                          
search RasMol script viewer Motif-ligand binding stats  schellmannloop ..       |   |                                                                      |   |                                                                                                       |    |             ******                                             |   | | |                                                          
search RasMol script viewer Motif-ligand binding stats  ststaple ..       *****                                                                      *****                                                                                                       ******                                                                ***** | |                                                          
search RasMol script viewer Motif-ligand binding stats  stturn ..                                                                                                                                                                                                                                                                          ***                                                          

chain T : DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3')
sec str:  ..........
sequence :  ..CATTAGAA
seq num:  ..1       

chain P : DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3')
JMol viewer RasMol script viewer  BA 341A  ..     * 
JMol viewer RasMol script viewer  BA 340A  ..     |*
sec str:  .........
sequence :  ..TCTAATG
seq num:  ..1      

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