1v2j: Sequences

PDBeMotif: 1v2j

		Sequences				3D motifs				Ligand environment				Ligand bonds

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Enzyme:	3.4.21.4
Classification:	hydrolase \| release date: Fri, Oct 17, 2003
Title:	benzamidine in complex with bovine trypsin variant x(ssri) bt.c1
Authors:	D.RAUH, G.KLEBE, M.T.STUBBS
Method:	X-RAY DIFFRACTION (resolution: 1.90Å)

PDBe Citation

Small molecules:

SO4

BEN

Ligand bond colours:

covalent

ionic

hydrogen

electrostatic

van-der-waals

plane-atom

plane-plane

undefined

- Click here to show 5Å bonds

Chain T sequence:
IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNT
LNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSRIITSNM
FCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN

Residue colours: hydrophilic hydrophobic intermediate

Assembly 1

View the assembly/model: (

)

Motif search

chain:

Sequence numbers:

Using:	φ/ψ residues code secondary structures
	coordinates of: Cαs Side-chain

View the fragment:

chain T : TRYPSIN member of: CATH:2.40.10.10, GENE3D:G3DSA_2.40.10.10, PANTHER:PTHR24264, PFAM:PF00089, PRINTS:CHYMOTRYPSIN, PROSITE PATTERNS:PS00134/PS00135, PROSITE PROFILES:PS50240, SMART:SM00020, SUPERFAMILY:SSF50494, UniProt:P00760
`BEN` `1T`	`.. **** * * * ** *`
`CA` `480T`	`.. * * * \|\|\|\| \| \| \| \|\| \|`
`SO4` `600T`	`.. * \| \| \| \|\|\|** * \| \| \|\| \|`
`sec str:`	`......ee........eeeee...eeeeeeeee..eeeehhhhh....eeee............eeeeeeeeee.............eeeee........................eeeeee...............eeeeee..hhhhhhhhh.......eeee................eeee..eeeeeeee..........eeeee...hhhhhhhhhhh.`
`sequence :`	`..IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSRIITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN`
`seq num:`	`..16 26 38 48 58 69 79 89 99 109 119 130 141 151 161 171 181 189 199 213 223 233`
`PKC_PHOSPHO_SITE`	`.. \| \| \|\|\| \| \| \|\|\|\| \|\| \|\|\|\| \| \|\| \|\| \| \|\| \|\|\|\| \| \|\| \| \|\| \| \| \| \|\|\| ^ ^\|\|\| \|\| \| \| \|\|\|\|\|\|\|\| \| \| ^** \| \| \| \| \|`
`CK2_PHOSPHO_SITE`	`.. \| \| \|\|\| \| \| \|\|\|\| \|\| \|\|\|\| \| \|\| \|\| \| \|\| \|\|\|\| \| \|\| \| \|\| \| \| ^***\| \| \|\|\| \|\| \| \| \|\|\|\|\|\|\|\| \| \| \| \| \| \| \|`
`MYRISTYL`	`.. ^*** \|\|\| \| ^*\|\| \|\| \|\|\|\| \| \|\| \|\| \| \|\| \|\|\|\| \| \|\| \| ^* \| \| \| \|\|\| \|\| \| ^*\|\|\|\| \| \| ^*** \| \|`
`TRYPSIN_HIS`	`.. \| \|\|\| \| \| \|\| ***^\| \| \|\| \|\| \| \|\| \|\|\|\| \| \|\| \| \|\| \| \| \| \| \|\|\| \|\| \| \| \|\|\|\|\|\|\|\| \| \| \| \| \| \|`
`TRYPSIN_SER`	`.. \| \|\|\| \| \| \|\| \| \| \| \| \|\| \|\| \| \|\| \|\|\|\| \| \|\| \| \|\| \| \| \| \| \|\|\| \|\| \| \| \|****^*** \| \| \| \|`
`asxturn`	`.. \| \|\|\| \| *\| \| \| \| \| \|\| \| \|\|\|\| \| \| \|** \| \| \| \|\|\| \|\| \| \| \|\|\|\|\|\|\|\| \| \| \| \| \|`
`betabulge`	`.. \| \|\|\| \| \| \| \| \| \| \| \| ** \| \| \|\|\| \| \| \| \| \| \| \| \|\|\| \|\| \| \| \|\|\|\|\|\|\|\| \| \| \| \| \|`
`betaturn`	`.. **\| \| \| \| \| \| \| \| \| \|\|\| \| \| \| \| \| \| \| \|\| \|\|\|***** \| \| \| \|`
`nest`	`.. * \| \| \| \| \| \| \| \| \| \| * \| \| \| \| \| \| \| \| \| \| \|\|\|\|\|*** \| \| \| \| \|`
`niche`	`.. ** \| \|\|\| * * \|\|\|\|\|* ** \| \|`
`ststaple`	`.. \| \|\|\| \|\|\|\|\|\| *****`
`stturn`	`.. \| *** \|\|\|\|\|\|`
`Catalytic site`	`.. * * ******`

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