triangle PDBeMotif: 1pbh  
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Enzyme   3.4.22.1
Classification thiol protease    | release date: Fri, Feb 14, 1997
Title crystal structure of human recombinant procathepsin b at 3.2 angstrom resolution
Authors D.TURK, M.PODOBNIK
Method X-RAY DIFFRACTION (resolution: 3.20Å)
PDBe Citation   
Ligand bond colours:   *  covalent   *  ionic   *  hydrogen   *  electrostatic   *  van-der-waals   *  plane-atom   *  plane-plane   *  undefined  - Click here to show 5Å bonds
Chain A sequence:
MRSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYLKRLCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTI
KEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESH
VGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY
SDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD
Residue colours:  hydrophilic   hydrophobic   intermediate 
Assembly 1     View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain A : PROCATHEPSIN B
member of: CATH:search3.90.70.10GENE3D:searchG3DSA_3.90.70.10PANTHER:searchPTHR12411/searchPTHR12411_SF285PFAM:searchPF00112/searchPF08127PRINTS:searchPAPAINPROSITE PATTERNS:searchPS00139/searchPS00639/searchPS00640, SMART:searchSM00645SUPERFAMILY:searchSSF54001UniProt:searchP07858
sec str:  .............................................................................................hhhhhhhhhhhhhhhhh..........hhhhhhh.......hhh...hhhhhhhhhh......................................................hhhh...eeeeee....hhhhhhhhhhh..eeeeeeee..hhheeee........eeeeeeeeeeeeee....eeeeee...........eeeee....hhh.....eeeee...
sequence :  ..MRSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYLKRLCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD
seq num:  ..1         10        20        30        40        50        60        8         18        28        38        48        58        68        78        88        98        108       118       128       138       148       158       168       178       188       198       208       218       228       238       248    
search RasMol script viewer Motif-ligand binding stats  ASN_GLYCOSYLATION ..             |  |||||^***   | |   |  | |  ||    |            | |    | |||    || ||  |||   || |||||| || |  || | |     |  |     ||  ||| |  |    |  || ||    || ||||    | |   |  |^*** | | |  | | |||    |  | |  |         | ||| |  ||               |  |             | |    || |    | ||   |  |  | |  |  | ||  | |||| |  |    |
search RasMol script viewer Motif-ligand binding stats  CAMP_PHOSPHO_SITE ..             |  |||**^*     | |   |  | |  ||    |            | |    | |||    || ||  |||   || |||||| || |  || | |     |  |     ||  ||| |  |    |  || ||    || ||||    | |   |  |     | | |  | | |||    |  | |  |         | ||| |  ||               |  |             | |    || |    | ||   |  |  | |  |  | ||  | |||| |  |    |
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..             |  ||| |||     | |   |  | |  ||    |            | |    | |||    |^**|  |||   || |||||| |^**  || | |     |  |     ||  ||| |  |    |  |^**|    || ||||    | |   |  |     | | |  ^** |||    |  ^**  |         | ^** |  ||               |  |             | |    || |    | ||   |  |  | |  |  | ||  | |||| |  |    |
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..             |  ||| |||     | |   |  | |  ||    |            | |    | |||    |^***  |||   || |||||| || |  || | |     ^***     ||  ||| |  |    |  ||  |    || ||||    | |   |  |     | | |    | |||    |    |  |         ^***  |  ||               |  |             | |    || |    | ||   |  |  | |  |  | ||  | |||| |  |    |
search RasMol script viewer Motif-ligand binding stats  TYR_PHOSPHO_SITE ..             |  ||| |||     | |   |  | |  ||    |            | |    | |||    || ||  |||   || |||||| || |  || | |     |  |     ||  ||| |  |    |  ||  |    || ||||    | |   |  |     | | |    | |******^    |  |               |  ||               |  |             | |    || |    | ||   |  |  | |  |  | ||  | |||| |  |    |
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..             |  ||| |||     | |   |  | |  |^*****            | |    | |||    || ||  ||^***** ||^*****| |  || | |     |  |     ^*****^*****    |  ||  ^*****| ||||    | |   |  |     | | |    | | |         |  |               |  ||               |  |             | |    || ^***** ||   |  |  | |  |  | |^*****||| |  ^*****
search RasMol script viewer Motif-ligand binding stats  THIOL_PROTEASE_CYS ..             |  ||| |||     | |   |  | |  |                  | |    | |||    || ||  |******^*****|| || |  || | |     |  |      |  ||  |       |  ||        | ||||    | |   |  |     | | |    | | |         |  |               |  ||               |  |             | |    || |      ||   |  |  | |  |  | |   | |||| |        
search RasMol script viewer Motif-ligand binding stats  THIOL_PROTEASE_HIS ..             |  ||| |||     | |   |  | |  |                  | |    | |||    || ||  |||   || ||| || || |  || | |     |  |      |  ||  |       |  ||        | ||||    | |   |  |     | | |    | | |         |  |               |  ||               |  |             **^********      ||   |  |  | |  |  | |   | |||| |        
search RasMol script viewer Motif-ligand binding stats  THIOL_PROTEASE_ASN ..             |  ||| |||     | |   |  | |  |                  | |    | |||    || ||  |||   || ||| || || |  || | |     |  |      |  ||  |       |  ||        | ||||    | |   |  |     | | |    | | |         |  |               |  ||               |  |               |    ||        *****^************** |   | |||| |        
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..             *****| |||     | |   |  | |  |                  | |    *****    *****  |||   *****| || || ***** | |     |  |      |  ||  |       *****        | ||||    | |   |  |     | | |    | | |         |  |               *****               |  |               |    ||         |   |  |  | |  |    |   | |||| |        
search RasMol script viewer Motif-ligand binding stats  asxmotif ..             |  | | |||     | |   |  | |  |                  | |    *****    || ||  |||   || | | || || |  || | |     |  |      |  ||  |       |  |         | ||||    | |   |  |     | | |    | | |         |  |               |  |                |  |               |    ||         |   |  |  | |  |    |   | |||| |        
search RasMol script viewer Motif-ligand binding stats  asxturn ..             |  | | |||     | |   |  | |  |                  | |    ***|     || ||  ***   || | | || || |  || | |     |  |      |  ||  |       |  |         | ||||    | |   |  |     | | |    | | |         |  |               |  |                |  |               |    ||         |   |  |  | |  |    |   | |||| |        
search RasMol script viewer Motif-ligand binding stats  betabulge ..             |  | | |||     | |   |  | |  |                  | |    |  |     || ||   |    || | | || || |  || | |     |  |      |  ||  |       |  |         | ||||    | |   |  |     | | |    | | |         |  |               |  |                |  |               |    **         |   |  |  | |  |    |   | |||| |        
search RasMol script viewer Motif-ligand binding stats  betaturn ..             **** ****|     | |   **** ****                  | |    ****     ****|   |    **** ******| ****| | |     ****      ********       ****         ****||    | |   ****     | | |    | | |         |  |               ****                |  |               |               |   |  |  | ****    |   ****** |        
search RasMol script viewer Motif-ligand binding stats  gammaturn ..                    | |     | |                              ***              |  |   |     |         |     | ***                                             ||||    | |   |  |     *****    *****         |  |                                   |  |               |               |   |  |  |         |     | |  |        
search RasMol script viewer Motif-ligand binding stats  nest ..                    ***     | |                                               |  |   |     |         |     |                                                 ****    | |   |  |                            |  |                                   |  |               |               |   |  |  |         |     ***  |        
search RasMol script viewer Motif-ligand binding stats  niche ..                            ***                                               ****   |     |         |     |                                                  | |    ***   ****                            ****                                   ****               |               |   |  ****         |       ****        
search RasMol script viewer Motif-ligand binding stats  stturn ..                                                                                     |     |         |     |                                                  ***                                                                                                    |               |   |               |                   
search RasMol script viewer Motif-ligand binding stats  Catalytic site ..                                                                                     *     *         *     *                                                                                                                                                         *               *   *               *                   

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