1kil: Sequences

PDBeMotif: 1kil

		Sequences				3D motifs				Ligand environment				Ligand bonds

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Classification:	membrane protein \| release date: Mon, Dec 3, 2001
Title:	three-dimensional structure of the complexin/snare complex
Authors:	D.ARAC, D.TOMCHICK, E.KOVRIGIN, J.RIZO, M.MACHIUS, T.C.SUDHOF, X.CHEN
Method:	X-RAY DIFFRACTION (resolution: 2.30Å)

Small molecules:

Ligand bond colours:

covalent

ionic

hydrogen

electrostatic

van-der-waals

plane-atom

plane-plane

undefined

- Click here to show 5Å bonds

Chain A sequence:
GSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKN

Chain B sequence:
GSALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD

Chain C sequence:
GSLEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLW

Chain D sequence:
GSARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLW

Chain E sequence:
GSKDPDAAKKEEERQEALRQAEEERKAKYAKMEAEREVMRQGIRDKYGI

Residue colours: hydrophilic hydrophobic intermediate

Assembly 1

View the assembly/model: (

)

Motif search

chain:

Sequence numbers:

Using:	φ/ψ residues code secondary structures
	coordinates of: Cαs Side-chain

View the fragment:

chain A : SYNAPTOBREVIN SNARE MOTIF member of: CATH:1.20.5.110, GENE3D:G3DSA_1.10.3840.10, PANTHER:PTHR21136/PTHR21136_SF36, PFAM:PF00957, PIRSF:PIRSF005409, PRINTS:SYNAPTOBREVN, PROSITE PATTERNS:PS00417, PROSITE PROFILES:PS50892, SUPERFAMILY:SSF58038, UniProt:P63045
`MG` `301A`	`.. *`
`sec str:`	`.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....`
`sequence :`	`..SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKN`
`seq num:`	`..28 38 48 58 68 78 88`
`PKC_PHOSPHO_SITE`	`..^** \| \| \| \| \| \| \| \|`
`CK2_PHOSPHO_SITE`	`.. \| ^* \| ^* \| \|`
`SYNAPTOBREVIN`	`.. ******************** \| \|`
`niche`	`.. ****`

chain B : SYNTAXIN SNARE MOTIF SHORT member of: CATH:1.20.5.110, GENE3D:G3DSA_1.20.5.110, PANTHER:PTHR19957/PTHR19957_SF84, PFAM:PF05739, PROSITE PATTERNS:PS00914, PROSITE PROFILES:PS50192, SMART:SM00397, SUPERFAMILY:SSF47661, UniProt:P32851
`MG` `301A`	`..`
`sec str:`	`..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..`
`sequence :`	`..LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD`
`seq num:`	`..192 202 212 222 232 242`
`PKC_PHOSPHO_SITE`	`.. \|\| \|\|\| \|\| \| ^**\| \| \| \|`
`CK2_PHOSPHO_SITE`	`.. ^*\|\| \|\| \| ^* ^*** \|`
`MYRISTYL`	`..*** \|\| \|\| \| \|\| \| \| \|`
`SYNTAXIN`	`.. \|****************************************`
`alphabetamotif`	`.. *** *** \| \|`
`betaturn`	`.. ** **`

chain C : SNAP-25 N-TERMINAL SNARE MOTIF member of: CATH:1.20.5.110, GENE3D:G3DSA_1.20.5.110, PANTHER:PTHR19305/PTHR19305_SF5, PROSITE PROFILES:PS50192, SMART:SM00397, SUPERFAMILY:SSF58038, UniProt:P60880
`MG` `302C`	`..`
`sec str:`	`..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.`
`sequence :`	`..SLEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDL`
`seq num:`	`..10 20 30 40 50 60 70`
`PKC_PHOSPHO_SITE`	`..\| \| \| \| ^**`
`CK2_PHOSPHO_SITE`	`..^*** \| \|`
`ststaple`	`.. *****`

chain D : SNAP-25 C-TERMINAL SNARE MOTIF member of: CATH:1.20.5.110, GENE3D:G3DSA_1.20.5.110, PANTHER:PTHR19305/PTHR19305_SF5, PFAM:PF00835/PF05739, PROSITE PROFILES:PS50192, SMART:SM00397, SUPERFAMILY:SSF58038, UniProt:P60880
`MG` `302C`	`..`
`sec str:`	`...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..`
`sequence :`	`..GSARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLW`
`seq num:`	`..139 149 159 169 179 189 199`
`ASN_GLYCOSYLATION`	`.. \| \|\| \|\| \|\| \| \| \|^*** \|`
`PKC_PHOSPHO_SITE`	`.. ^\| \|\| \|\| \| \| ^\| \|`
`CK2_PHOSPHO_SITE`	`.. ^* \|\| \|\| \| \| ^*`
`MYRISTYL`	`.. ^***** \| \|`
`alphabetamotif`	`.. ***** \| \|`
`betaturn`	`.. **** \| \|`
`ststaple`	`.. *****`

chain E : COMPLEXIN I SNARE-COMPLEX BINDING REGION member of: CATH:1.20.5.580, GENE3D:G3DSA_1.20.5.580, PANTHER:PTHR16705/PTHR16705_SF3, PFAM:PF05835, SUPERFAMILY:SSF58038, UniProt:P63041
`sec str:`	`....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.`
`sequence :`	`..KKEEERQEALRQAEEERKAKYAKMEAEREVMRQGIRDKYGI`
`seq num:`	`..32 42 52 62`
`alphabetamotif`	`.. ***** \| \|\|\|`
`betaturn`	`.. ** **\|`
`nest`	`.. ***`

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