triangle PDBeMotif: 1ird  
  coner Sequences coner   coner 3D motifs coner   coner Ligand environment coner   coner Ligand bonds coner
   
coner
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coner
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Classification oxygen storage/transport    | release date: Thu, Sep 27, 2001
Title crystal structure of human carbonmonoxy-haemoglobin at 1.25 a resolution
Authors J.R.H.TAME, S.-Y.PARK
Method X-RAY DIFFRACTION (resolution: 1.25Å)
PDBe Citation   
Small molecules:    search HEM HEM binding statistics HEM   search CMO CMO binding statistics CMO
Ligand bond colours:   *  covalent   *  ionic   *  hydrogen   *  electrostatic   *  van-der-waals   *  plane-atom   *  plane-plane   *  undefined  - Click here to show 5Å bonds
Chain A sequence:
VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNAL
SALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR
Chain B sequence:
VHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDN
LKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH
Residue colours:  hydrophilic   hydrophobic   intermediate 
Assembly 1     View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain A : HEMOGLOBIN ALPHA CHAIN
member of: CATH:search1.10.490.10GENE3D:searchG3DSA_1.10.490.10PANTHER:searchPTHR11442/searchPTHR11442_SF41PFAM:searchPF00042PRINTS:searchALPHAHAEM/searchPIHAEMPROSITE PROFILES:searchPS01033, SUPERFAMILY:searchSSF46458UniProt:searchP69905
JMol viewer RasMol script viewer  CMO 143A  ..                            *                            *   *                                                                               
JMol viewer RasMol script viewer  HEM 142A  ..                            |            ** *            *  **  *                 *  **   * *   **  *                                  *     
sec str:  ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh....
sequence :  ..VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR
seq num:  ..1         11        21        31        41        51        61        71        81        91        101       111       121       131        
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..  |  ||      |  || |  |            | ^**  |  || |  |   | |  |          |  |    |   |      | |                                       |   ^**| 
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..  ^***|      |  || |  |            |  |   |  || |  |   | |  |          |  |    |   |      | |                                       |   |  | 
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..  |   |      |  |^*****            |  |   |  || |  |   | |  |          |  |    |   |      | |                                       |   |  | 
search RasMol script viewer Motif-ligand binding stats  AMIDATION ..  |   |      |  |  |               |  |   |  || |  |   | ^***          |  |    |   |      | |                                       |   |  | 
search RasMol script viewer Motif-ligand binding stats  betaturn ..  |   |      *******               ****   |  || ****   |               ****    |   |      | |                                       |   |  | 
search RasMol script viewer Motif-ligand binding stats  nest ..  |   |                                   |  || |  |   |                       |   |      ***                                       |   |  | 
search RasMol script viewer Motif-ligand binding stats  niche ..  |   |                                   **********   |                       |   |                                                |   **** 
search RasMol script viewer Motif-ligand binding stats  stmotif ..  *****                                            *****                       |   |                                                |   |    
search RasMol script viewer Motif-ligand binding stats  ststaple ..                                                                               *****                                                *****    

chain B : HEMOGLOBIN BETA CHAIN
member of: CATH:search1.10.490.10GENE3D:searchG3DSA_1.10.490.10PANTHER:searchPTHR11442/searchPTHR11442_SF30PFAM:searchPF00042PRINTS:searchBETAHAEMPROSITE PROFILES:searchPS01033, SUPERFAMILY:searchSSF46458UniProt:searchP68871
JMol viewer RasMol script viewer  CMO 348B  ..                                                              *   *                                                                               
JMol viewer RasMol script viewer  HEM 347B  ..                                     *  **                    *  *|   *                *  **   * *   *   *                                  *     
sec str:  .....hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
sequence :  ..VHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH
seq num:  ..201       211       221       231       241       251       261       271       281       291       301       311       321       331       341   
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..   |  ||     || ||| |             |  ^** | || | || | |  | |   |  |       |  |  |  ||  || |     | || |                 |  ||   |        |    ||  | 
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..   ^***|     || ||| |             |  ||  | ^*** ^*** |  | |   |  |       |  |  |  ||  ^***     | || |                 |  ||   |        |    ||  | 
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..   |   |     || ||| |             |  ||  |  | |  |   |  | |   |  |       |  |  |  ^*****       | || |                 |  ||   |        ^*****|  | 
search RasMol script viewer Motif-ligand binding stats  AMIDATION ..   |   |     || ||| |             |  ||  |  | |  |   |  | |   ^***       |  |  |   |           | || |                 |  ||   |              |  | 
search RasMol script viewer Motif-ligand binding stats  asxmotif ..   |   |     || ||| |             |  ||  |  | |  |   |  | |              |  |  *****           | || |                 |  ||   |              |  | 
search RasMol script viewer Motif-ligand binding stats  asxturn ..   |   |     || ||***             |  ||  |  | |  |   |  ***              |  |  |               | |***                 |  ||   |              |  | 
search RasMol script viewer Motif-ligand binding stats  betaturn ..   |   |     ****|                *********** |  |   |  |                *******               | |                    ****|   |              **** 
search RasMol script viewer Motif-ligand binding stats  nest ..   |   |      |  |                            |  |   |  |                                      ***                        |   |                   
search RasMol script viewer Motif-ligand binding stats  niche ..   |   |      ****                            ****   ****                                                                 |   |                   
search RasMol script viewer Motif-ligand binding stats  stmotif ..   *****                                         *****                                                                    *****                   

Assembly 2     View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain A : HEMOGLOBIN ALPHA CHAIN
member of: CATH:search1.10.490.10GENE3D:searchG3DSA_1.10.490.10PANTHER:searchPTHR11442/searchPTHR11442_SF41PFAM:searchPF00042PRINTS:searchALPHAHAEM/searchPIHAEMPROSITE PROFILES:searchPS01033, SUPERFAMILY:searchSSF46458UniProt:searchP69905
JMol viewer RasMol script viewer  CMO 143A  ..                            *                            *   *                                                                               
JMol viewer RasMol script viewer  HEM 142A  ..                            |            ** *            *  **  *                 *  **   * *   **  *                                  *     
sec str:  ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh....
sequence :  ..VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR
seq num:  ..1         11        21        31        41        51        61        71        81        91        101       111       121       131        
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..  |  ||      |  || |  |            | ^**  |  || |  |   | |  |          |  |    |   |      | |                                       |   ^**| 
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..  ^***|      |  || |  |            |  |   |  || |  |   | |  |          |  |    |   |      | |                                       |   |  | 
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..  |   |      |  |^*****            |  |   |  || |  |   | |  |          |  |    |   |      | |                                       |   |  | 
search RasMol script viewer Motif-ligand binding stats  AMIDATION ..  |   |      |  |  |               |  |   |  || |  |   | ^***          |  |    |   |      | |                                       |   |  | 
search RasMol script viewer Motif-ligand binding stats  betaturn ..  |   |      *******               ****   |  || ****   |               ****    |   |      | |                                       |   |  | 
search RasMol script viewer Motif-ligand binding stats  nest ..  |   |                                   |  || |  |   |                       |   |      ***                                       |   |  | 
search RasMol script viewer Motif-ligand binding stats  niche ..  |   |                                   **********   |                       |   |                                                |   **** 
search RasMol script viewer Motif-ligand binding stats  stmotif ..  *****                                            *****                       |   |                                                |   |    
search RasMol script viewer Motif-ligand binding stats  ststaple ..                                                                               *****                                                *****    

chain B : HEMOGLOBIN BETA CHAIN
member of: CATH:search1.10.490.10GENE3D:searchG3DSA_1.10.490.10PANTHER:searchPTHR11442/searchPTHR11442_SF30PFAM:searchPF00042PRINTS:searchBETAHAEMPROSITE PROFILES:searchPS01033, SUPERFAMILY:searchSSF46458UniProt:searchP68871
JMol viewer RasMol script viewer  CMO 348B  ..                                                              *   *                                                                               
JMol viewer RasMol script viewer  HEM 347B  ..                                     *  **                    *  *|   *                *  **   * *   *   *                                  *     
sec str:  .....hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
sequence :  ..VHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH
seq num:  ..201       211       221       231       241       251       261       271       281       291       301       311       321       331       341   
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..   |  ||     || ||| |             |  ^** | || | || | |  | |   |  |       |  |  |  ||  || |     | || |                 |  ||   |        |    ||  | 
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..   ^***|     || ||| |             |  ||  | ^*** ^*** |  | |   |  |       |  |  |  ||  ^***     | || |                 |  ||   |        |    ||  | 
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..   |   |     || ||| |             |  ||  |  | |  |   |  | |   |  |       |  |  |  ^*****       | || |                 |  ||   |        ^*****|  | 
search RasMol script viewer Motif-ligand binding stats  AMIDATION ..   |   |     || ||| |             |  ||  |  | |  |   |  | |   ^***       |  |  |   |           | || |                 |  ||   |              |  | 
search RasMol script viewer Motif-ligand binding stats  asxmotif ..   |   |     || ||| |             |  ||  |  | |  |   |  | |              |  |  *****           | || |                 |  ||   |              |  | 
search RasMol script viewer Motif-ligand binding stats  asxturn ..   |   |     || ||***             |  ||  |  | |  |   |  ***              |  |  |               | |***                 |  ||   |              |  | 
search RasMol script viewer Motif-ligand binding stats  betaturn ..   |   |     ****|                *********** |  |   |  |                *******               | |                    ****|   |              **** 
search RasMol script viewer Motif-ligand binding stats  nest ..   |   |      |  |                            |  |   |  |                                      ***                        |   |                   
search RasMol script viewer Motif-ligand binding stats  niche ..   |   |      ****                            ****   ****                                                                 |   |                   
search RasMol script viewer Motif-ligand binding stats  stmotif ..   *****                                         *****                                                                    *****                   

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