triangle PDBeMotif: 1fr2  
  coner Sequences coner   coner 3D motifs coner   coner Ligand environment coner   coner Ligand bonds coner
   
coner
   Search  |  PDB header search  |  Upload PDB file  |  Molecule binding  |  Pair bonds  |  Motif binding  |  3D environment  |  Motif inclusion  
coner
AstexViewer TM
Download original PDB file
Download xml file
Download structure factors file
Enzyme   3.1.21.1
Classification immune system    | release date: Thu, Sep 7, 2000
Title crystal structure of the e9 dnase domain with a mutant immunity protein im9(e41a)
Authors A.J.POMMER, A.M.HEMMINGS, C KLEANTHOUS, G.M.MOORE, R.JAMES, U.C.KUHLMANN
Method X-RAY DIFFRACTION (resolution: 1.60Å)
PDBe Citation   
Small molecules:    search ZN ZN binding statistics ZN   search PO4 PO4 binding statistics PO4
Ligand bond colours:   *  covalent   *  ionic   *  hydrogen   *  electrostatic   *  van-der-waals   *  plane-atom   *  plane-plane   *  undefined  - Click here to show 5Å bonds
Chain A sequence:
MELKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFAEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGK
SGFKQG
Chain B sequence:
MESKRNKPGKATGKGKPVGDKWLDDAGKDSGAPIPDRIADKLRDKEFKSFDDFRKAVWEEVSKDPELSKNLNPSNKSSVS
KGYSPFTPKNQQVGGRKVYELHHDKPISQGGEVYDMDNIRVTTPKRHIDIHRGK
Residue colours:  hydrophilic   hydrophobic   intermediate 
Assembly 1     View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain A : COLICIN E9 IMMUNITY PROTEIN
member of: CATH:search1.10.1200.20GENE3D:searchG3DSA_1.10.1200.20PFAM:searchPF01320PRINTS:searchPYOCINPRODOM:searchPD007225SUPERFAMILY:searchSSF47345UniProt:searchP13479
sec str:  .....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh....hhhhhh.......hhhhhhhhhhhhhhhh.......
sequence :  ..LKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFAEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ
seq num:  ..3         13        23        33        43        53        63        73        83 
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..   || |||  ||     || |||| ||  ||   |     | | | || ||  |  || |  ||  ^**     | |     
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..   ^***|^***|     || |||^***  ||   |     | | ^*** ||  |  || |  ||   |      | |     
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..    |  ||   |     || |||  |   ||   |     | | | || ||  |  || |  ^*****      | |     
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..    |  ||   |     || |||  |   ||   |     | | | *****  |  || |   |          | |     
search RasMol script viewer Motif-ligand binding stats  asxturn ..    |  ||   |     || |||  |   ||   |     | | | || |   |  |***   |          | |     
search RasMol script viewer Motif-ligand binding stats  betaturn ..    ****|   |     |****|  |   ||   |     | | ******   |  || |   |          | |     
search RasMol script viewer Motif-ligand binding stats  nest ..    |  ||   |     |  ***  |   ||   |     ***          |  || |   |          ***     
search RasMol script viewer Motif-ligand binding stats  niche ..    ****|   |     |    |  |   ||   |     | |          *******   |                  
search RasMol script viewer Motif-ligand binding stats  schellmannloop ..        |   |     ******  |   ||   |     | |                |   |                  
search RasMol script viewer Motif-ligand binding stats  stmotif ..        *****             *****|   |     | |                *****                  
search RasMol script viewer Motif-ligand binding stats  ststaple ..                               *****     | |                                       
search RasMol script viewer Motif-ligand binding stats  stturn ..                                         ***                                       

chain B : COLICIN E9
member of: CATH:search3.90.540.10GENE3D:searchG3DSA_1.10.287.620/searchG3DSA_3.90.540.10PFAM:searchPF12639SMART:searchSM00507SUPERFAMILY:searchSSF54060/searchSSF69985UniProt:searchP09883
JMol viewer RasMol script viewer  ZN 301B  ..                                                                                                    *                        *   * 
JMol viewer RasMol script viewer  PO4 403B  ..   *                                                                                               ***                       *   * 
sec str:  ...hhhhh.ee..........hhhhhh.....ee.hhhhhhhhh..ee.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh......hhhhh.......eeee..hhhhh........eeeehhhhhhhhhh
sequence :  ..ESKRNKPGKATGKGKPVGDKWLDDAGKDSGAPIPDRIADKLRDKEFKSFDDFRKAVWEEVSKDPELSKNLNPSNKSSVSKGYSPFTPKNQQVGGRKVYELHHDKPISQGGEVYDMDNIRVTTPKRHIDIHR
seq num:  ..2         12        22        32        42        52        62        72        82        92        102       112       122        
search RasMol script viewer Motif-ligand binding stats  ASN_GLYCOSYLATION .. ||| |    | |          |  |  |        | || |   |  |        |  | | |  |  |^***| |||   | |  | | ||  | ||     | ||  |||||   | | |     
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE .. ^** |    ^**          |  |  |        | || |   |  |        |  | | |  |  ^** || |||   ^**  | | ||  | ||     | ||  |||||   ^** |     
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..  |  |                 |  |  |        | || |   ^***        |  | | |  |      || |||     |  | | ||  | ||     | ||  |||||   |   |     
search RasMol script viewer Motif-ligand binding stats  AMIDATION ..  |  |                 |  |  |        | || |               |  | | |  |      || |||     |  | ^***  | ||     | ||  |||||   |   |     
search RasMol script viewer Motif-ligand binding stats  asxmotif ..  |  |                 |  |  |        | || |               |  | | |  |      || |||     |  | | |   | ||     | ||  *****   |   |     
search RasMol script viewer Motif-ligand binding stats  asxturn ..  |  |                 |  |  |        | || |               |  *** |  |      || |||     |  | | |   | ||     | ||  ***||   |   |     
search RasMol script viewer Motif-ligand binding stats  betaturn ..  |  |                 |  ****        | || |               |  |   |  |      |****|     **** | |   | ||     | ||  ****|   |   |     
search RasMol script viewer Motif-ligand binding stats  nest ..  |  |                 |  |           | || |               |  |   |  |      |  ***     |  | | |   | ||     ***|  ||  |   |   |     
search RasMol script viewer Motif-ligand binding stats  niche ..  ****                 ****           ******               ****   ****      |    |     **** ***   | ||        ********   |   |     
search RasMol script viewer Motif-ligand binding stats  schellmannloop ..                                                                            ******                | ||                   |   |     
search RasMol script viewer Motif-ligand binding stats  stmotif ..                                                                                                  | ||                   *****     
search RasMol script viewer Motif-ligand binding stats  Catalytic site ..                                                                                                  * **                             

   New search    1fr2:  Sequences  |  3D motifs  |  Ligand environment  |   Ligand bonds   |  SPICE view  |  PDB  |  XML  |  Structure factors