1ba4: Sequences

PDBeMotif: 1ba4

		Sequences				3D motifs				Ligand environment				Ligand bonds

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Classification:	glycoprotein \| release date: Tue, Apr 7, 1998
Title:	the solution structure of amyloid beta-peptide (1-40) in a water-micelle environment. is the membrane-spanning domain where we think it is? nmr, 10 structures
Authors:	A.A.WATSON, D.J.CRAIK, D.P.FAIRLIE, M.COLES, W.BICKNELL
Method:	SOLUTION NMR

PDBe Citation

Ligand bond colours:

covalent

ionic

hydrogen

electrostatic

van-der-waals

plane-atom

plane-plane

undefined

- Click here to show 5Å bonds

Chain A sequence:
DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVV

Residue colours: hydrophilic hydrophobic intermediate

View the assembly/model: (

)

Motif search

chain:

Sequence numbers:

Using:	φ/ψ residues code secondary structures
	coordinates of: Cαs Side-chain

View the fragment:

chain A : AMYLOID BETA-PEPTIDE member of: CATH:4.10.230.10, GENE3D:G3DSA_4.10.230.10, PANTHER:PTHR23103/PTHR23103_SF7, PFAM:PF03494, PRINTS:AMYLOIDA4/BETAAMYLOID, UniProt:P05067
`sec str:`	`................hhhhhhhhhhhhhhhhhhhhhh....`
`sequence :`	`..DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVV`
`seq num:`	`..1 11 21 31`
`PKC_PHOSPHO_SITE`	`.. \| \|\|\| \| \|\| \| \|\|^** \| \| \|`
`CK2_PHOSPHO_SITE`	`.. ^***\| \| \|\| \| \|\|\|\|\| \| \| \|`
`MYRISTYL`	`.. \| \| \| \|\| \| \|^*** ^***`
`alphabetamotif`	`.. \| \| *** \| ***`
`betaturn`	`.. \| \| ** \| **`
`gammaturn`	`.. *** \| \|`
`ststaple`	`.. *****`

View the assembly/model: (

)

Motif search

chain:

Sequence numbers:

Using:	φ/ψ residues code secondary structures
	coordinates of: Cαs Side-chain

View the fragment:

chain A : AMYLOID BETA-PEPTIDE member of: CATH:4.10.230.10, GENE3D:G3DSA_4.10.230.10, PANTHER:PTHR23103/PTHR23103_SF7, PFAM:PF03494, PRINTS:AMYLOIDA4/BETAAMYLOID, UniProt:P05067
`sec str:`	`................hhhhhhhhhhhhhhhhhhhhhh....`
`sequence :`	`..DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVV`
`seq num:`	`..1 11 21 31`
`PKC_PHOSPHO_SITE`	`.. \| \| \| \| \| \|^** \| \| \|`
`CK2_PHOSPHO_SITE`	`.. \| \| ^*** \| \|\| \| \| \|`
`MYRISTYL`	`.. \| \| \| ^*** ^***`
`nest`	`.. *** \| \|`
`ststaple`	`.. *****`

View the assembly/model: (

)

Motif search

chain:

Sequence numbers:

Using:	φ/ψ residues code secondary structures
	coordinates of: Cαs Side-chain

View the fragment:

chain A : AMYLOID BETA-PEPTIDE member of: CATH:4.10.230.10, GENE3D:G3DSA_4.10.230.10, PANTHER:PTHR23103/PTHR23103_SF7, PFAM:PF03494, PRINTS:AMYLOIDA4/BETAAMYLOID, UniProt:P05067
`sec str:`	`................hhhhhhhhhhhhhhhhhhhhhh....`
`sequence :`	`..DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVV`
`seq num:`	`..1 11 21 31`
`PKC_PHOSPHO_SITE`	`.. \| \| \| \| \| \|\| \|\|^** \| \|\| \|\|\|\|`
`CK2_PHOSPHO_SITE`	`.. \| ^*** \| \| \|\| \|\| \| \| \|\| \|\|\|\|`
`MYRISTYL`	`.. \| \| \| \| \|\| \|^*** ^***\|\|`
`alphabetamotif`	`.. \| \| \| ***** \| \| \| \|\|\|\|`
`betaturn`	`.. \| \| \| ** **\|\|\|`
`gammaturn`	`.. *** \| \| \|\|\|\|`
`nest`	`.. * **`

View the assembly/model: (

)

Motif search

chain:

Sequence numbers:

Using:	φ/ψ residues code secondary structures
	coordinates of: Cαs Side-chain

View the fragment:

chain A : AMYLOID BETA-PEPTIDE member of: CATH:4.10.230.10, GENE3D:G3DSA_4.10.230.10, PANTHER:PTHR23103/PTHR23103_SF7, PFAM:PF03494, PRINTS:AMYLOIDA4/BETAAMYLOID, UniProt:P05067
`sec str:`	`................hhhhhhhhhhhhhhhhhhhhhh....`
`sequence :`	`..DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVV`
`seq num:`	`..1 11 21 31`
`PKC_PHOSPHO_SITE`	`..\|\|\|\| \|\|\| \| \| \| \|\| \|^** \|\|\|\| \|`
`CK2_PHOSPHO_SITE`	`..\|\|\|\| \|^*** \| \| \|\| \| \| \|\|\|\| \|`
`MYRISTYL`	`..\|\|\|\| \| \| \| \| \|\| ^***\|\|^***`
`alphabetamotif`	`..\|\|\|\| \| \| \| *** ***`
`asxturn`	`..***\| \| \| \| \| \| \| \|`
`betaturn`	`.. \| \| \| \| \| ** **`
`gammaturn`	`.. \| \| *** \| \|`
`nest`	`.. * *`

View the assembly/model: (

)

Motif search

chain:

Sequence numbers:

Using:	φ/ψ residues code secondary structures
	coordinates of: Cαs Side-chain

View the fragment:

chain A : AMYLOID BETA-PEPTIDE member of: CATH:4.10.230.10, GENE3D:G3DSA_4.10.230.10, PANTHER:PTHR23103/PTHR23103_SF7, PFAM:PF03494, PRINTS:AMYLOIDA4/BETAAMYLOID, UniProt:P05067
`sec str:`	`................hhhhhhhhhhhhhhhhhhhhhh....`
`sequence :`	`..DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVV`
`seq num:`	`..1 11 21 31`
`PKC_PHOSPHO_SITE`	`.. \| \| \| \|\|\|\|^** \|\|\|\| \|`
`CK2_PHOSPHO_SITE`	`.. ^*** \| \|\|\|\| \|\| \|\|\|\| \|`
`MYRISTYL`	`.. \| \|\|\|^***\|\|^***`
`alphabetamotif`	`.. ***\| \|***`
`betaturn`	`.. ** ******`

View the assembly/model: (

)

Motif search

chain:

Sequence numbers:

Using:	φ/ψ residues code secondary structures
	coordinates of: Cαs Side-chain

View the fragment:

chain A : AMYLOID BETA-PEPTIDE member of: CATH:4.10.230.10, GENE3D:G3DSA_4.10.230.10, PANTHER:PTHR23103/PTHR23103_SF7, PFAM:PF03494, PRINTS:AMYLOIDA4/BETAAMYLOID, UniProt:P05067
`sec str:`	`................hhhhhhhhhhhhhhhhhhhhhh....`
`sequence :`	`..DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVV`
`seq num:`	`..1 11 21 31`
`PKC_PHOSPHO_SITE`	`.. \| \| \|^**\|\| \|\| \| \|`
`CK2_PHOSPHO_SITE`	`.. ^*** \| \|\| \|\| \| \|`
`MYRISTYL`	`.. ^*** \|^*** \|`
`alphabetamotif`	`.. ***** \| \|`
`betaturn`	`.. **** \| \|`
`nest`	`.. ***`

View the assembly/model: (

)

Motif search

chain:

Sequence numbers:

Using:	φ/ψ residues code secondary structures
	coordinates of: Cαs Side-chain

View the fragment:

chain A : AMYLOID BETA-PEPTIDE member of: CATH:4.10.230.10, GENE3D:G3DSA_4.10.230.10, PANTHER:PTHR23103/PTHR23103_SF7, PFAM:PF03494, PRINTS:AMYLOIDA4/BETAAMYLOID, UniProt:P05067
`sec str:`	`................hhhhhhhhhhhhhhhhhhhhhh....`
`sequence :`	`..DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVV`
`seq num:`	`..1 11 21 31`
`PKC_PHOSPHO_SITE`	`.. \| \| \| \|\| \| \|\| \|^**\|\| \|\|\| \|\|\|\|\|`
`CK2_PHOSPHO_SITE`	`.. \| \| ^*** \| \|\| \|\| \|\| \|\|\| \|\|\|\|\|`
`MYRISTYL`	`.. \| \| \| \| \| \|\| ^*** \|^***\|\|`
`alphabetamotif`	`.. \| \| \| \| *** \| ***\| \|\|\|\|\|`
`betaturn`	`.. \| \| \| \| ** ***\|**\|\|\|`
`nest`	`.. * * \| *****`
`schellmannloop`	`.. ******`

View the assembly/model: (

)

Motif search

chain:

Sequence numbers:

Using:	φ/ψ residues code secondary structures
	coordinates of: Cαs Side-chain

View the fragment:

chain A : AMYLOID BETA-PEPTIDE member of: CATH:4.10.230.10, GENE3D:G3DSA_4.10.230.10, PANTHER:PTHR23103/PTHR23103_SF7, PFAM:PF03494, PRINTS:AMYLOIDA4/BETAAMYLOID, UniProt:P05067
`sec str:`	`................hhhhhhhhhhhhhhhhhhhhhh....`
`sequence :`	`..DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVV`
`seq num:`	`..1 11 21 31`
`PKC_PHOSPHO_SITE`	`.. \| \|\| \|^** \| \| \|`
`CK2_PHOSPHO_SITE`	`.. ^*** \| \| \| \|`
`MYRISTYL`	`.. \| \| ^*** ^***`
`nest`	`.. ***`

View the assembly/model: (

)

Motif search

chain:

Sequence numbers:

Using:	φ/ψ residues code secondary structures
	coordinates of: Cαs Side-chain

View the fragment:

chain A : AMYLOID BETA-PEPTIDE member of: CATH:4.10.230.10, GENE3D:G3DSA_4.10.230.10, PANTHER:PTHR23103/PTHR23103_SF7, PFAM:PF03494, PRINTS:AMYLOIDA4/BETAAMYLOID, UniProt:P05067
`sec str:`	`................hhhhhhhhhhhhhhhhhhhhhh....`
`sequence :`	`..DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVV`
`seq num:`	`..1 11 21 31`
`PKC_PHOSPHO_SITE`	`.. \| \| \|\| \| \| \| \|\|^** \| \| \| \|`
`CK2_PHOSPHO_SITE`	`.. \| \| \|^*** \| \| \|\| \|\| \| \| \| \|`
`MYRISTYL`	`.. \| \| \| \| \| \|^*** ^*** \|`
`alphabetamotif`	`.. \| \| \| \| \| ***** \| \|`
`betaturn`	`.. \| \| \| ** ** \| \|`
`nest`	`.. * \| *`
`niche`	`.. ***`

View the assembly/model: (

)

Motif search

chain:

Sequence numbers:

Using:	φ/ψ residues code secondary structures
	coordinates of: Cαs Side-chain

View the fragment:

chain A : AMYLOID BETA-PEPTIDE member of: CATH:4.10.230.10, GENE3D:G3DSA_4.10.230.10, PANTHER:PTHR23103/PTHR23103_SF7, PFAM:PF03494, PRINTS:AMYLOIDA4/BETAAMYLOID, UniProt:P05067
`sec str:`	`................hhhhhhhhhhhhhhhhhhhhhh....`
`sequence :`	`..DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVV`
`seq num:`	`..1 11 21 31`
`PKC_PHOSPHO_SITE`	`.. \| \| \|^** \| \| \|\|\|\|`
`CK2_PHOSPHO_SITE`	`.. ^*** \| \| \| \|\|\|\|`
`MYRISTYL`	`.. ^*** ^***\|\|`
`nest`	`.. ****`

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