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Uber-anatomy ontology

Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data.

Ontology info

Ontology id: uberon
Version: 2017-12-01
Number of terms: 15070
Last loaded: Mon Dec 04 08:49:14 GMT 2017

creator

Alex Decechi

Anne Niknejad

Aurelie Comte

Wasila Dahdul

Nizar Ibrahim

David Blackburn

Erik Segerdell

Chris Mungall - http://orcid.org/0000-0002-6601-2165

Melissa Haendel

Git repository

https://github.com/cmungall/uberon/

treat-xrefs-as-has-subclass

EV

OGES

NCIT

SCTID

EHDAA

treat-xrefs-as-reverse-genus-differentia

TAO part_of NCBITaxon:32443

OlatDv part_of NCBITaxon:8089

EMAPA part_of NCBITaxon:10090

ZFA part_of NCBITaxon:7954

MmusDv part_of NCBITaxon:10090

FBdv part_of NCBITaxon:7227

HBA part_of NCBITaxon:9606

DMBA part_of NCBITaxon:10090

MA part_of NCBITaxon:10090

DHBA part_of NCBITaxon:9606

TADS part_of NCBITaxon:6939

MBA part_of NCBITaxon:10090

XAO part_of NCBITaxon:8353

WBls part_of NCBITaxon:6237

HAO part_of NCBITaxon:7399

HsapDv part_of NCBITaxon:9606

PBA part_of NCBITaxon:9443

FBbt part_of NCBITaxon:7227

TGMA part_of NCBITaxon:44484

ZFS part_of NCBITaxon:7954

AAO part_of NCBITaxon:8292

EHDAA2 part_of NCBITaxon:9606

MFO part_of NCBITaxon:8089

SPD part_of NCBITaxon:6893

WBbt part_of NCBITaxon:6237

FMA part_of NCBITaxon:9606

bug database

https://github.com/obophenotype/uberon/issues/

derived from resource

ISBN:0683400088 Stedman's Medical Dictionary

Common_Upper_Mammalian_Brain_Ontology_(Cumbo)

https://docs.google.com/document/d/1cPWBqrl_Qy7XHEWFqtR_PgQX61yRkgGuLaiDpnEXxkE/edit

https://docs.google.com/document/d/16JZOuH9sh_a8uIXA4cqg0Q1H6MV5yCj3-rhuKsZoV_U/edit

cl.owl

ISBN10:0123813611 Comparative Anatomy and Histology: A Mouse and Human Atlas, Treuting and Dintzis

go.owl

palaeos.com

ISBN:9780397517251 Surgical anatomy of the hand and upper extremity. By James R. Doyle and Michael J. Botte

https://docs.google.com/document/d/1r9kNPpFYGdu0SpJDLyFAVQczBlG0wAZCBMd18gG3Ot8/edit#

aao.owl

aba.owl

efo.owl

nifstd

ISBN:9780674021839 The Tree of Life - Guillaume Lecointre, Herve Le Guyader

www.brain-map.org

ISBN-10:0226313379 Fins into Limbs: Evolution, Development, and Transformation, Hall

xao.owl

https://docs.google.com/document/d/1MnUgispgGfNQoezYzWzzGTnkAnI0gzRnJIwdip6MMtw/edit

ISBN:0030229073 Invertebrate Zoology, Barnes

http://wiki.phenotypercn.org/wg/phenotypercn/index.php?title=Neural_Crest_Workshop

hp.owl

ISBN10:1607950324 Craniofacial Embryogenetics & Development, 2nd edition, Sperber

ISBN10:1588900649 Color Atlas and Textbook of Human Anatomy: Nervous system and sensory organs By Werner Kahle, Michael Frotscher

emapa.owl

aeo.owl

fbbt.owl

vsao.owl

ehdaa2.owl

tao.owl

bto.owl

PMID:16417468 Forgotten and novel aspects in pancreas development, Pieler and Chen

fma.owl

caro.owl

ma.owl

bila.owl

MESH

ISBN:9780120749034 The laboratory rat

ISBN10:0471888893 Comparative Vertebrate Neuroanatomy: Evolution and Adaptation by Butler and Hodos

ISBN-10:0443065837 Human embryology, Larsen

https://docs.google.com/spreadsheet/ccc?key=0Aj8NJdyb-leqdDM0R3hTVTRHRExDVjRCSkZEbDc5N1E#gid=0

kupo.owl

dbpedia.org

vhog.owl

http://wiki.phenotypercn.org/wiki/August_2012_Notes

NIF-GrossAnatomy.owl

ISBN:9780878932504 Developmental Biology

ISBN:978-0-12-369548-2 Principles of Developmental Genetics, Sally A Moody

ISBN10:1588903958 Principles and practice of pediatric neurosurgery By A. Leland Albright, P. David Adelson, Ian F. Pollack

wbbt.owl

PMID:11433360 Placental development: lessons from mouse mutants

mp.owl

ISBN10:0073040584 Vertebrates, Kardong

zfa.owl

contributor

Paula Duek Roggli

Sarah Whitcher Kansa - https://orcid.org/0000-0001-7920-5321

Yvonne Bradford

George Gkoutos

Ceri Van Slyke

Maryann Martone

James Balhoff

James Malone

Anna Anagnostopoulos

Phenoscape Project

Marc Robinson-Rechavi

Trish Whetzel

Brian K Hall

Bill Bug

Lydie Lane

Terry Hayamizu

Frederic Bastian

neXtProt project

Jonathan Bard

Gene Ontology Consortium

Alexander Diehl

Robert Druzinsky

Hilmar Lapp

Carlo Torniai

David Hill

Paul Sereno

Duncan Davidson

Onard Mejino

Bgee Project - http://bgee.unil.ch

David Osumi-Sutherland

Mark Engelstad - https://orcid.org/0000-0001-5889-4463

Rebecca Foulger

Terry Meehan

Ann Maglia

Shahim Essaid

Paula Mabee

Catherine Leroy

Cynthia Smith

Paul Schofield

Alan Ruttenberg

Suzanna Lewis

NIF Project - http://neuinfo.org/

PATO Project

SVN repository

https://obo.svn.sourceforge.net/svnroot/obo/uberon/

treat-xrefs-as-equivalent

BILA

VSAO

CARO

GO

OG

AEO

EFO

BSPO

is referenced by

http://www.ncbi.nlm.nih.gov/pubmed/22293552

http://genomebiology.com/2012/13/1/R5

publisher

http://uberon.org

comment

Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/reflexivity_axioms.owl>) VersionIRI(<null>))) [Axioms: 2 Logical Axioms: 2]

Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 25837 Logical Axioms: 4725]

Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/TEMP>) VersionIRI(<null>))) [Axioms: 437 Logical Axioms: 0]

Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/insect-anatomy.owl>) VersionIRI(<null>))) [Axioms: 2098 Logical Axioms: 650]

Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon-bridge-to-bfo.owl>) VersionIRI(<null>))) [Axioms: 20 Logical Axioms: 9]