A sequence variant whereby at least one base of a codon is changed, resulting in a premature stop codon, leading to a shortened polypeptide. [ http://www.sequenceontology.org/browser/current_svn/term/SO:ke ]
Synonyms:
nonsense codon
Jannovar:stop_gained
snpEff:STOP_GAINED
ANNOVAR:stopgain
VAT:prematureStop
stop gained
VAAST:stop_gained
nonsense
Seattleseq:stop-gained
VEP:stop_gained
This is just here as a test because I lose it
Term information
variant annotation term
VAAST:stop_gained
variant annotation term
Jannovar:stop_gained
[
http://doc-openbio.readthedocs.org/projects/jannovar/en/master/var_effects.html
]
variant annotation term
snpEff:STOP_GAINED
variant annotation term
VEP:stop_gained
dbsnp variant terms
nonsense
[
ftp
:
//ftp.ncbi.nih.gov/snp/specs/docsum_3.1.xsd
]
variant annotation term
Seattleseq:stop-gained-near-splice
variant annotation term
Seattleseq:stop-gained
variant annotation term
VAT:prematureStop
comment
- EBI term: Stop gained - In coding sequence, resulting in the gain of a stop codon (i.e. leading to a shortened peptide sequence).
created by
- kareneilbeck
creation date
- 2010-03-22T02:37:52Z
has obo namespace
- sequence
has related synonym
- Seattleseq:stop-gained-near-splice
- stop codon gained
id
- SO:0001587
Term relations
Subclass of: