A sequence variant whereby at least one base of a codon is changed, resulting in a premature stop codon, leading to a shortened polypeptide. [ http://www.sequenceontology.org/browser/current_svn/term/SO:ke ]

Synonyms:

nonsense codon

Jannovar:stop_gained

snpEff:STOP_GAINED

ANNOVAR:stopgain

VAT:prematureStop

stop gained

VAAST:stop_gained

nonsense

Seattleseq:stop-gained

VEP:stop_gained

This is just here as a test because I lose it

Term information

comment
  • EBI term: Stop gained - In coding sequence, resulting in the gain of a stop codon (i.e. leading to a shortened peptide sequence).
created by
  • kareneilbeck
creation date
  • 2010-03-22T02:37:52Z
has related synonym
  • Seattleseq:stop-gained-near-splice
  • stop codon gained
id
  • SO:0001587

Term relations