eNanoMapper Ontology

The eNanoMapper project (www.enanomapper.net) is creating a pan-European computational infrastructure for toxicological data management for ENMs, based on semantic web standards and ontologies. > This ontology is an application ontology targeting the full domain of nanomaterial safety assessment. It re-uses several other ontologies including the NPO, CHEMINF, ChEBI, and ENVO.

  0: asymptomatic
  100: asymptomatic
  1: symptomatic but fully ambulatory
  2: symptomatic but in bed less than 50% of the day
  3: symptomatic in bed more than 50% of the day but not bed ridden
  40-50: symptomatic, in bed more than 50% of the day, but not bed ridden
  4: bed ridden
  60-70: symptomatic but in bed less than 50% of the day
  80-90: symptomatic but fully ambulatory
  95% confidence interval
  ACS
  AES Chemunex
  AOP Decreased Fecundity via Aromatase Inhibition
  AOP Decreased Fecundity via Estrogen Receptor-alpha Antagonism
  AOP Decreased Fecundity via PPAR-gamma Activation
  AOP Neural Tube Defect via Hoxb1
  AOP Steatosis Via DHB4
  AOP Steatosis Via FXR and HSD17B4
  AOP Steatosis Via IRS1, AKT, GSK3 and Lipogenesis
  AOP Steatosis Via IRS1, AKT2, TSC1 or TSC2 and Lipogenesis
  AOP_Steatosis_Via_Insulin_AKT_TSC1_and_Lipogenesis
  AOP_Steatosis_Via_NRF2_and_DHB4
  Advanced Instruments Inc. (AI Companies)
  Affymetrix
  Afrotropical Ecoregion
  Agilent
  Akt2
  Aldabra Island Xeric Scrub Ecoregion
  Ambion
  Antarctic front
  Antigenix
  Apogee Flow Systems
  Applied Biosystems
  Arctic front
  Aromatase
  Australasia Ecoregion
  BAO_0001109
  BIO-RAD
  BayesNSMR
  Beckman Coulter
  Becton Dickinson (BD Biosciences)
  Bentley Instruments
  BioGents
  BkF
  BkF15umBayesNSMRCall
  BkF15umBioAssayResults
  Bruker Corporation
  Bruker Daltonics
  CD
  CMIERelationship_Aromatase_Inhibition
  CMIERelationship_Estrogen_Receptor-alpha_Inhibition
  CMIERelationship_FXR_Activation
  CMIERelationship_IRS1_Activation
  CMIERelationship_PPAR-gamma_Activation
  CMIERelationship_unknown_dhb4
  Carnarvon Xeric Shrublands Ecoregion
  Central Ranges Xeric Shrub Ecoregion
  Compensation-ML
  CytoBuoy
  Cytopeia
  Dako Cytomation
  DecreasedFecundity
  Earth
  East Saharan Montane Xeric Woodland Ecoregion
  Edingburgh handedness inventory
  Eritrean Coastal Desert Ecoregion
  Estradiol
  Estrogen_receptor_alpha
  Ethiopian Xeric Grasslands and Shrublands Ecoregion
  Exalpha Biological
  Exbio Antibodies
  FCS
  FXR
  Fecundity
  G1 (Fuhrman)
  G1 (WHO)
  G1: Well differentiated
  G2 (Fuhrman)
  G2 (WHO)
  G2: Moderately differentiated
  G3 (Fuhrman)
  G3 (WHO)
  G3: Poorly differentiated
  G4 (Fuhrman)
  G4 (WHO)
  G4: Undifferentiated
  GAZ_00000448
  GSK3
  Gating-ML
  GenePattern CART
  GenePattern HeatMapViewer data visualization
  GenePattern HierarchicalClusteringViewer data visualization
  GenePattern LOOCV
  GenePattern PCA
  GenePattern SVM
  GenePattern hierarchical clustering
  GenePattern k-means clustering
  GenePattern k-nearest neighbors
  GenePattern module CARTXValidation
  GenePattern module HeatMapViewer
  GenePattern module HierarchicalClustering
  GenePattern module HierarchicalClusteringViewer
  GenePattern module KMeansClustering
  GenePattern module KNN
  GenePattern module KNNXValidation
  GenePattern module PCA
  GenePattern module PeakMatch
  GenePattern module SVM
  GenePattern peak matching
  Gibson Desert Ecoregion
  Great Victoria Desert Ecoregion
  HSD17B4
  Helicos
  High grade ovarian tumor
  Hobyo Grassland and Shrubland Ecoregion
  Hoxb1
  IRS1
  Ile Europa and Bassas da India Ecoregion
  Illumina
  Indo-Malay Ecoregion
  Invitrogen
  Kalahari Xeric Savanna Ecoregion
  Kaokoveld Desert Ecoregion
  Li-Cor
  Low grade ovarian tumor
  Luminex
  MIE_Aromatase_Inhibition
  MIE_Estrogen_receptor_alpha_antagonism
  MIE_FXR_Activation
  MIE_HSD17B4_inactivity
  MIE_IRS1_Activation
  MIE_PPAR-gamma_activation
  Madagascar Spiny Thickets Ecoregion
  Madagascar Succulent Woodlands Ecoregion
  Masai Xeric Grasslands and Shrublands Ecoregion
  Millipore
  Miltenyi Biotec
  Nama Karoo Ecoregion
  Namib Desert Ecoregion
  Namibian Savanna Woodland Ecoregion
  NanoString Technologies
  Neural Tube Defect
  Nimblegen
  Northwestern Thorn Scrub Forests
  Nullarbor Plains Xeric Shrubland Ecoregion
  OWL
  Occult Carcinoma (AJCC 7th)
  Oman and United Arab Emirates Ecoregion
  Oman, Yemen, and Saudi Arabia Ecoregion
  Oxford Nanopore Technologies
  PPAR-alpha
  PPAR-gamma
  Pacific Biosciences
  Partec
  Pilbara Shrublands Ecoregion
  RAR_ligand_mediated_activation
  RDF
  Red Sea Coastal Desert Ecoregion
  Rheb1
  Roche
  Roentgen equivalent man
  SREBP1
  Simpson Desert Region
  Socotran Archipelago Ecoregion
  Sol
  Solar radiation
  Somali Montane Xeric Woodland Ecoregion
  Stage 0 (AJCC 7th)
  Stage 1 (FIGO)
  Stage 1A (FIGO)
  Stage 1B (FIGO)
  Stage 1C (FIGO)
  Stage 2 (FIGO)
  Stage 2A (FIGO)
  Stage 2B (FIGO)
  Stage 2C (FIGO)
  Stage 3 (FIGO)
  Stage 3A (FIGO)
  Stage 3B (FIGO)
  Stage 3C (FIGO)
  Stage 4 (FIGO)
  Stage I (AJCC 7th)
  Stage IA (FIGO)
  Stage IA1 (FIGO)
  Stage IA2 (FIGO)
  Stage IB (FIGO)
  Stage IB1 (FIGO)
  Stage IB2 (FIGO)
  Stage IIA (AJCC 7th)
  Stage IIA (FIGO)
  Stage IIA1 (FIGO)
  Stage IIA2 (FIGO)
  Stage IIB (AJCC 7th)
  Stage IIB (FIGO)
  Stage IIC (AJCC 7th)
  Stage IIIA (AJCC 7th)
  Stage IIIA (FIGO)
  Stage IIIB (AJCC 7th)
  Stage IIIB (FIGO)
  Stage IIIC (AJCC 7th)
  Stage IVA (AJCC 7th)
  Stage IVA (FIGO)
  Stage IVB (AJCC 7th)
  Stage IVB (FIGO)
  Stage Unknown (FIGO)
  Steatosis
  Succulent Karoo Ecoregion
  Suni
  Sysmex Corporation, Kobe, Japan
  Thar Desert
  The Great Sandy-Tanami Desert Ecoregion
  Thermo
  Thermo Fisher Scientific
  Tirari-Sturt Stony Desert Ecoregion
  Transformation-ML
  Tsc1
  U.S. Food and Drug Administration
  UBERON_0002367
  Vitellogenin
  WWW
  Waters
  Western Australian Mulga Shrublands Ecoregion
  World Ocean
  XML
  Yemen and Saudi Arabia Ecoregion
  Yemen, Saudi Arabia, and Oman Ecoregion
  absorbance unit
  acre
  activity_activation
  activity_deactivation
  ambidexterous
  ampere
  analog magnetic tape
  angstrom
  antagonism_HSD17B4_unknown_mechanism
  ao-test
  attomole
  axiom holds for all times
  base pair
  becquerel
  bit
  bkf_15um
  byte
  cM0 (colon)
  cM0 (kidney)
  cM0 (lung)
  cM0 (ovary)
  cM1 (colon)
  cM1 (kidney)
  cM1 (lung)
  cM1 (ovary)
  cM1a (colon)
  cM1a (lung)
  cM1b (colon)
  cM1b (lung)
  cable
  candela
  candela per square meter
  cells per milliliter
  centiMorgan
  centiRay
  centimeter
  century
  chain
  chroma sampling unit
  cloud
  colony forming unit
  colony forming unit per milliliter
  colony forming unit per volume
  confluence percentage
  coulomb
  count per molar
  count per molar second
  count per nanomolar
  count per nanomolar second
  counts per minute
  cubic centimeter
  cubic centimeter per mole
  cubic decimeter
  cubic meter
  cubic meter per kilogram
  cubic meter per mole
  curie
  dalton
  day
  decibel
  deciliter
  defined class
  degree
  degree Celsius
  degree Fahrenheit
  digital magnetic tape
  digital versatile disc
  disintegrations per minute
  disintegrations per second
  dosage unit
  dots per inch
  drachm
  dynamic range unit
  dyne per cm
  eBioscience
  effective dose unit
  einstein per square meter per second
  electronvolt
  enzyme unit
  enzyme_target
  example to be eventually removed
  expression_activation
  expression_deactivation
  failed exploratory term
  fathom
  femtogram
  femtoliter
  femtomolar
  femtomole
  film
  floppy disk
  fluid ounce
  foot
  foot candle
  furlong
  gallon
  gigabasepair
  gill
  grain
  gram
  gram per cubic centimeter
  gram per deciliter
  gram per liter
  gram per milliliter
  gram per mole
  gram per square meter
  gray
  half life
  hard drive
  hectare
  hertz
  hour
  hoxb1_gene
  hsd17b4_bioassay
  hsd17b4_percent_activity
  hundredweight
  iao.owl
  inch
  ind_high_confidence
  ind_low_confidence
  ind_medium_confidence
  ind_very_high_confidence
  ind_very_low_confidence
  internet
  intranet
  joule
  katal
  katal per cubic meter
  katal per liter
  kelvin
  kibibyte
  kilobyte
  kilodalton
  kilogram
  kilogram meter per second
  kilogram per cubic meter
  kilogram per hectare
  kilogram per liter
  kilogram per meter
  kilogram per mole
  kilogram per square meter
  kilometer per hour
  kilovolt
  kilovolt-hour
  kilowatt-hour
  large calorie
  leads_to
  league
  left handed
  liter
  liter per kilogram
  lumen
  lux
  mTORC1
  maritime length unit
  mass per unit volume
  mass percentage
  mass volume percentage
  measure_group_bkf_15um
  mebibyte
  megaHertz
  megabasepair
  megabyte
  megavolt
  metadata complete
  metadata incomplete
  meter
  meter per second
  meter per second per second
  microampere
  microcurie
  microeinstein per square meter per second
  microgram
  microgram per liter
  microgram per milliliter
  micrograms per wheaton bottle
  microgray
  microliter
  microliter per kilogram
  microliters per minute
  micrometer
  micromolal
  micromolar
  micromolar
  micromole
  micromole
  micromole per kilogram
  micromole per litre
  micron pixel
  microsecond
  microsievert
  microvolt
  mile
  milli
  milliampere
  millicurie
  milligram
  milligram per kilogram
  milligram per kilogram per day
  milligram per liter
  milligram per milliliter
  milligram per square meter
  milligray
  milliliter
  milliliter per cubic meter
  milliliter per kilogram
  milliliter per liter
  millimeter
  millimeters per day
  millimetres of mercury
  millimolal
  millimolar
  millimole
  millisecond
  millisiemens
  millisievert
  milliunits per milliliter
  millivolt
  minute
  molal
  molar
  mole
  mole fraction
  molecule count
  month
  named class expression
  nanogram
  nanogram per microliter
  nanogram per milliliter
  nanogray
  nanoliter
  nanometer
  nanomolal
  nanomolar
  nanomole
  nanosecond
  nanosievert
  nanovolt
  nautical mile
  newton
  newton per meter
  normal
  obi.owl
  obsolete_core
  obsolete_manufacturer role of Bruker Corporation
  obsolete_manufacturer role of Bruker Daltonics
  obsolete_manufacturer role of applied biosystems
  obsolete_other
  obsolete_the manufacturer role of Agilent
  obsolete_the manufacturer role of Ambion
  obsolete_the manufacturer role of BIO-RAD
  obsolete_the manufacturer role of Helicos
  obsolete_the manufacturer role of Illumina
  obsolete_the manufacturer role of Li-Cor
  obsolete_the manufacturer role of Roche
  obsolete_the manufacturer role of Thermo
  obsolete_the manufacturer role of Waters
  obsolete_the regulator role of the FDA
  obsolete_the supplier role of Affymetrix
  organizational term
  ounce
  pH
  pM1 (colon)
  pM1 (kidney)
  pM1 (lung)
  pM1 (ovary)
  pM1a (colon)
  pM1a (lung)
  pM1b (colon)
  pM1b (lung)
  pN0 (colon)
  pN0 (kidney)
  pN0 (lung)
  pN0 (ovary)
  pN1 (colon)
  pN1 (kidney)
  pN1 (lung)
  pN1 (ovary)
  pN1a (colon)
  pN1b (colon)
  pN1c (colon)
  pN2 (colon)
  pN2 (lung)
  pN2a (colon)
  pN2b (colon)
  pN3 (lung)
  pT0 (colon)
  pT0 (kidney)
  pT0 (lung)
  pT0 (ovary)
  pT1 (colon)
  pT1 (kidney)
  pT1 (lung)
  pT1 (ovary)
  pT1a (kidney)
  pT1a (lung)
  pT1a (ovary)
  pT1b (kidney)
  pT1b (lung)
  pT1b (ovary)
  pT1c (ovary)
  pT2 (colon)
  pT2 (kidney)
  pT2 (lung)
  pT2 (ovary)
  pT2a (kidney)
  pT2a (lung)
  pT2a (ovary)
  pT2b (kidney)
  pT2b (lung)
  pT2b (ovary)
  pT2c (ovary)
  pT3 (colon)
  pT3 (kidney)
  pT3 (lung)
  pT3 (ovary)
  pT3a (kidney)
  pT3a (ovary)
  pT3b (kidney)
  pT3b (ovary)
  pT3c (kidney)
  pT3c (ovary)
  pT4 (kidney)
  pT4 (lung)
  pT4a (colon)
  pT4b (colon)
  pTis (colon)
  pTis (lung)
  paper
  parts per billion
  parts per hundred
  parts per million
  parts per quadrillion
  parts per thousand
  parts per trillion
  pascal
  pascal second
  pending final vetting
  percent_activiation_normalization
  perch
  pi
  picoampere
  picogram
  picoliter
  picometer
  picomolal
  picomolar
  picomole
  picosecond
  picovolt
  pint
  pixels per inch
  pixels per millimeter
  placeholder removed
  plaque forming unit
  plaque forming unit per milliliter
  poise
  pound
  protein_translation
  purity percentage
  quart
  quarter
  rad
  radian
  radian per second
  radian per second per second
  random access memory
  rar
  rar_rxr_heterodimer
  ready for release
  relation has no temporal argument
  relationship_akt2_gsk3
  relationship_akt2_tsc1
  relationship_aromatase_estrogen
  relationship_estradiol_fecundity
  relationship_estradiol_vitellogenin
  relationship_estrogen_receptor-alpha_vitellogenin
  relationship_fxr_ppar_activation
  relationship_gsk3_srebp1
  relationship_hoxb1_gene_expression_hoxb1_protein_translation
  relationship_hoxb1_neural_tube_defect
  relationship_hsd17b4_steatosis
  relationship_irs1_akt2
  relationship_mie_rar_rxr_heterodimer
  relationship_mtorc1_srebp1
  relationship_ppar-gamma_aromatase
  relationship_ppar_hsd17b4
  relationship_rar_mie
  relationship_rar_rxr_heterodimer_hoxb1_gene_expression
  relationship_rheb1_mtorc1
  relationship_srebp1_steatosis
  relationship_tsc1_rheb1
  relationship_vitellogenin_fecundity
  relative fluorescence unit
  relative light unit
  relative luminescence unit
  requires discussion
  right handed
  roentgen
  rood
  rxr
  second
  siemens
  sievert
  slug
  solid state memory
  square centimeter
  square meter
  square micrometer
  square millimeter
  steradian
  stone
  tar
  teaspoon
  term imported
  term split
  terms merged
  tesla
  thou
  to be replaced with external ontology term
  ton
  turns per second
  uncurated
  unit per liter
  unit per milliliter
  universal
  vinyl disk
  volt
  volt per meter
  volt-hour
  volume percentage
  watt
  watt per meter kelvin
  watt per square meter
  watt per steradian
  watt per steradian per square meter
  watt-hour
  weber
  week
  yard
  year
  zip

Ontology information

Ontology ID: enm
Version: 7.4
Number of terms: 11974
Last loaded: Mon Jul 18 17:37:43 BST 2022

contributor

Ali Ayadi

Denise Slenter

Egon Willighagen

Friederike Ehrhart

Gareth Owen

Haralambos Sarimveis

Janna Hastings

Jiakang Chang

Laurent Winckers

Linda Rieswijk

NanoinformaTIX - Development and Implementation of a Sustainable Modelling Platform for NanoInformatics (Grant Agreement 814426) Consortium

Nina Jeliazkova

Oana Florean

Philip Doganis

The ACEnano - Analytical and Characterisation Excellence in nanomaterial risk assessment: A tiered approach (Grant Agreement 720952) Consortium

The NanoCommons Consortium

The eNanoMapper Consortium

Contributor

Ali Ayadi

Denise Slenter

Egon Willighagen

Friederike Ehrhart

Gareth Owen

Haralambos Sarimveis

Janna Hastings

Jiakang Chang

Laurent Winckers

Linda Rieswijk

NanoinformaTIX - Development and Implementation of a Sustainable Modelling Platform for NanoInformatics (Grant Agreement 814426) Consortium

Nina Jeliazkova

Oana Florean

Philip Doganis

The ACEnano - Analytical and Characterisation Excellence in nanomaterial risk assessment: A tiered approach (Grant Agreement 720952) Consortium

The NanoCommons Consortium

The eNanoMapper Consortium

comment

The eNanoMapper project (https://www.enanomapper.net/), NanoCommons project (https://www.nanocommons.eu/), and NanoSolveIT project (https://nanosolveit.eu/) are creating a pan-European computational infrastructure for toxicological data management for ENMs, based on semantic web standards and ontologies. This ontology is an application ontology targeting the full domain of nanomaterial safety assessment. It re-uses several other ontologies including the NPO, CHEMINF, ChEBI, and ENVO.