List of all ontologies in OLS

Ontology Name Short name Description Loaded Action
Anatomical Entity Ontology AEO AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology Fri Jul 15 21:27:33 BST 2016 Search
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Adverse Event Reporting Ontology AERO The Adverse Event Reporting Ontology (AERO) is an ontology aimed at supporting clinicians at the time of data entry, increasing quality and accuracy of reported adverse events Mon Jun 26 01:22:18 BST 2017 Search
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Agronomy Ontology AGRO Ontology of agronomic practices, agronomic techniques, and agronomic variables used in agronomic experiments Tue May 15 03:48:54 BST 2018 Search
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Ancestry Ontology ancestro The Ancestry Ontology (Ancestro) provides a systematic description of the ancestry concepts used in the NHGRI-EBI Catalog of published genome-wide association studies. It includes a list of countries, regions and major areas (essentially continents), as well as a fairly exhaustive list of country- or region-specific ancestral groups, uncategorised ancestral groups and population isolates. Mon May 22 01:24:47 BST 2017 Search
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Ascomycete phenotype ontology APO A structured controlled vocabulary for the phenotypes of Ascomycete fungi Fri Dec 07 01:28:05 GMT 2018 Search
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Antibiotic Resistance Ontology ARO Antibiotic resistance genes and mutations Sat Oct 13 01:08:09 BST 2018 Search
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Animal Trait Ontology for Livestock ATOL ATOL (Animal Trait Ontology for Livestock) is an ontology of characteristics defining phenotypes of livestock in their environment (EOL). ATOL aims to: - provide a reference ontology of phenotypic traits of farm animals for the international scientificand educational - communities, farmers, etc.; - deliver this reference ontology in a language which can be used by computers in order to support database management, semantic analysis and modeling; - represent traits as generic as possible for livestock vertebrates; - make the ATOL ontology as operational as possible and closely related to measurement techniques; - structure the ontology in relation to animal production. Thu Sep 13 02:18:31 BST 2018 Search
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BioAssay Ontology BAO The BioAssay Ontology (BAO) describes biological screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis. BAO is an extensible, knowledge-based, highly expressive (currently SHOIQ(D)) description of biological assays making use of descriptive logic based features of the Web Ontology Language (OWL). BAO currently has over 700 classes and also makes use of several other ontologies. It describes several concepts related to biological screening, including Perturbagen, Format, Meta Target, Design, Detection Technology, and Endpoint. Perturbagens are perturbing agents that are screened in an assay; they are mostly small molecules. Assay Meta Target describes what is known about the biological system and / or its components interrogated in the assay (and influenced by the Perturbagen). Meta target can be directly described as a molecular entity (e.g. a purified protein or a protein complex), or indirectly by a biological process or event (e.g. phosphorylation). Format describes the biological or chemical features common to each test condition in the assay and includes biochemical, cell-based, organism-based, and variations thereof. The assay Design describes the assay methodology and implementation of how the perturbation of the biological system is translated into a detectable signal. Detection Technology relates to the physical method and technical details to detect and record a signal. Endpoints are the final HTS results as they are usually published (such as IC50, percent inhibition, etc). BAO has been designed to accommodate multiplexed assays. All main BAO components include multiple levels of sub-categories and specification classes, which are linked via object property relationships forming an expressive knowledge-based representation. Wed Sep 05 16:53:03 BST 2018 Search
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Beta Cell Genomics Ontology BCGO An application ontology built for beta cell genomics studies. Mon Jun 26 01:42:21 BST 2017 Search
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Biological Collections Ontology BCO An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys. Mon Jun 26 01:52:58 BST 2017 Search
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Basic Formal Ontology BFO The upper level ontology upon which OBO Foundry ontologies are built. Wed Mar 23 13:35:08 GMT 2016 Search
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Biological Spatial Ontology BSPO An ontology for respresenting spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces Wed Jul 04 02:32:44 BST 2018 Search
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BRENDA tissue / enzyme source BTO A structured controlled vocabulary for the source of an enzyme comprising tissues, cell lines, cell types and cell cultures. Tue Oct 18 01:20:00 BST 2016 Search
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Common Anatomy Reference Ontology CARO An upper level ontology to facilitate interoperability between existing anatomy ontologies for different species Mon Oct 22 01:35:12 BST 2018 Search
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Cell Cycle Ontology CCO The Cell Cycle Ontology extends existing ontologies for cell cycle knowledge building a resource that integrates and manages knowledge about the cell cycle components and regulatory aspects. Wed Mar 23 13:43:08 GMT 2016 Search
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Comparative Data Analysis Ontology CDAO The Comparative Data Analysis Ontology (CDAO) provides a framework for understanding data in the context of evolutionary-comparative analysis. This comparative approach is used commonly in bioinformatics and other areas of biology to draw inferences from a comparison of differently evolved versions of something, such as differently evolved versions of a protein. In this kind of analysis, the things-to-be-compared typically are classes called 'OTUs' (Operational Taxonomic Units). The OTUs can represent biological species, but also may be drawn from higher or lower in a biological hierarchy, anywhere from molecules to communities. The features to be compared among OTUs are rendered in an entity-attribute-value model sometimes referred to as the 'character-state data model'. For a given character, such as 'beak length', each OTU has a state, such as 'short' or 'long'. The differences between states are understood to emerge by a historical process of evolutionary transitions in state, represented by a model (or rules) of transitions along with a phylogenetic tree. CDAO provides the framework for representing OTUs, trees, transformations, and characters. The representation of characters and transformations may depend on imported ontologies for a specific type of character. Mon Jun 05 01:52:11 BST 2017 Search
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Cephalopod Ontology CEPH An anatomical and developmental ontology for cephalopods Mon Dec 05 01:23:31 GMT 2016 Search
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Chemical Entities of Biological Interest CHEBI A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds. Mon Dec 03 01:46:53 GMT 2018 Search
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chemical information ontology (cheminf) - information entities about chemical entities CHEMINF Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them. Fri Sep 14 02:14:20 BST 2018 Search
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Chemical Methods Ontology CHMO CHMO, the chemical methods ontology, describes methods used to Fri Aug 17 02:31:49 BST 2018 Search
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Confidence Information Ontology CIO An ontology to capture confidence information about annotations. Mon Jun 11 03:35:22 BST 2018 Search
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Cell Ontology CL The Cell Ontology is a structured controlled vocabulary for cell types in animals. Wed Jul 11 01:26:38 BST 2018 Search
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CLO: Cell Line Ontology CLO The Cell Line Ontology (CLO) is a community-based ontology of cell lines. The CLO is developed to unify publicly available cell line entry data from multiple sources to a standardized logically defined format based on consensus design patterns. Mon Oct 15 02:30:06 BST 2018 Search
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Clinical measurement ontology CMO Morphological and physiological measurement records generated from clinical and model organism research and health programs. Fri Dec 07 01:46:05 GMT 2018 Search
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Cellular Microscopy Phenotype Ontology CMPO CMPO is a species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations. Fri Jan 05 01:40:04 GMT 2018 Search
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Rice ontology CO_320 Rice Trait Dictionary in template v 5.0 - IRRI - March 2016 - Based on SES, RD, UPOV variables and on variables used by CIAT, FLAR and the GRISP Phenotyping Network variables Tue Dec 11 01:29:50 GMT 2018 Search
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Wheat ontology CO_321 July 2018 Mon Dec 10 01:29:34 GMT 2018 Search
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Maize ontology CO_322 Maize Trait Dictionary in template 5 - CIMMYT- September 2016 Mon Dec 10 01:48:54 GMT 2018 Search
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Barley ontology CO_323 ICARDA - TDv5 - Sept 2018 Tue Dec 11 01:47:22 GMT 2018 Search
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Sorghum ontology CO_324 Sorghum TDv5 - Jan 2018 Fri Dec 07 02:03:58 GMT 2018 Search
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Banana ontology CO_325 Banana Trait Dictionary in template 5 - Bioversity & IITA - September 2017 - characterization and breeding variables, drought experiment variables Fri Dec 07 02:21:40 GMT 2018 Search
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Pearl millet ontology CO_327 Pearl millet Trait Dictionary in template 5 - ICRISAT/INERA - April 2016 Tue Dec 04 01:58:31 GMT 2018 Search
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Potato ontology CO_330 CIP - potato ontology - december 2017 Fri Dec 07 02:39:58 GMT 2018 Search
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Sweet Potato ontology CO_331 Sweet Potato Trait Dictionary in template v5 - CIP - June 2016 Wed Dec 05 05:33:22 GMT 2018 Search
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Beet Ontology ontology CO_333 This ontology was built as part of the AKER project. It describes variables used in beet phenotyping (experimental properties and measurement scale) for each institution (INRA, Geves, ITB) and breeding companies (Florimond Desprez). Curator: Daphne Verdelet (Florimond Desprez) - Submitted in November 2017. Fri Dec 07 02:57:58 GMT 2018 Search
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Cassava ontology CO_334 Cassava Trait Dictionary in template 5 - IITA - July 2015, updated in February 2016 Mon Dec 10 02:07:03 GMT 2018 Search
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Common bean ontology CO_335 CIAT Common bean trait dictionary - version August 2014 Wed Dec 05 06:25:25 GMT 2018 Search
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Soybean ontology CO_336 Soybean Trait Dictionary in template v5 - IITA - July 2015 Search
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Groundnut ontology CO_337 Groundnut Trait Dictionary in template v5 - ICRISAT/ISRA/DARS - Sept 2015 Tue Jan 09 04:19:24 GMT 2018 Search
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Chickpea ontology CO_338 Chickpea Trait Dictionary in template v5 - ICRISAT - July 2015 Tue Jan 09 04:36:40 GMT 2018 Search
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Lentil ontology CO_339 Lentil Trait Dictionary in template v5 - ICARDA - July 2015 Tue Dec 11 02:05:46 GMT 2018 Search
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Cowpea ontology CO_340 Cowpea Trait Dictionary in template v5 - IITA - August 2015 Fri Dec 07 03:16:40 GMT 2018 Search
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Pigeonpea ontology CO_341 Pigeonpea Trait Dictionary in template v5 - ICRISAT - July 2015 Tue Dec 11 02:23:25 GMT 2018 Search
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Yam ontology CO_343 IITA - Yam trait ontology -TD v. 5.0- Feb 2017 Thu Nov 29 04:10:54 GMT 2018 Search
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Brachiaria ontology CO_345 Brachiaria (forages) ontology TD v5 - Version Oct 2016 Fri Sep 14 02:41:13 BST 2018 Search
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Mungbean ontology CO_346 oct 2016 Wed Dec 05 07:44:02 GMT 2018 Search
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Castor bean ontology CO_347 March 2017 version Tue Dec 11 02:41:02 GMT 2018 Search
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Brassica ontology CO_348 Brassica Trait Ontology (BRaTO) hosts trait information to describe brassica crop data. Terms are collected from various projects including OREGIN, RIPR (UK) and Rapsodyn (France). BRATO development is conducted by Earlham Institute (UK), Southern Cross University (Australia) and INRA (France). Tue Dec 11 02:58:30 GMT 2018 Search
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Oat ontology CO_350 Oat trait dictionary commissioned by Oat Global (http://oatglobal.org/) to hold the traits used in the T3/Oat database (http://triticeaetoolbox.org/oat/). Tue Dec 11 03:16:15 GMT 2018 Search
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Vitis ontology CO_356 Grape Ontology including OIV and bioversity descriptors. INRA July 2017 Mon Nov 19 02:26:58 GMT 2018 Search
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Woody Plant Ontology ontology CO_357 This ontology list all variables used for woody plant observations. Terms are collected from various sources (past and ongoing projects at national and international levels). Curators: Celia Michotey (INRA) & Ines Chaves (IBET) - Version 1 submitted on August 2017 by INRA. Tue Dec 11 03:34:04 GMT 2018 Search
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Sunflower ontology CO_359 Sunflower Trait Dictionary in template v5 - Sept 2018. Curators: Evan Staton (UBC) and Kristin Nurkowski (UBC). Terms and definitions were kindly provided by collaborators at INRA, USDA, IBP, and other institutes or companies.




Sugar Kelp trait ontology CO_360 Sugar Kelp trait ontology Wed Dec 05 08:36:33 GMT 2018 Search
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Contributor Role Ontology CRO A classification of the diverse roles performed in the work leading to a published research output in the sciences. Its purpose to provide transparency in contributions to scholarly published work, to enable improved systems of attribution, credit, and accountability. Sat Oct 13 04:57:27 BST 2018 Search
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Ctenophore Ontology CTENO An anatomical and developmental ontology for ctenophores (Comb Jellies) Thu Oct 20 01:20:09 BST 2016 Search
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Cardiovascular Disease Ontology CVDO An ontology to describe entities related to cardiovascular diseases Thu Aug 03 01:37:06 BST 2017 Search
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Dictyostelium discoideum anatomy DDANAT A structured controlled vocabulary of the anatomy of the slime-mold Dictyostelium discoideum Tue Dec 11 03:52:06 GMT 2018 Search
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Dictyostelium discoideum phenotype ontology DDPHENO A structured controlled vocabulary of phenotypes of the slime-mould <i>Dictyostelium discoideum</i>. Tue Dec 11 04:10:10 GMT 2018 Search
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DICOM Controlled Terminology DICOM DICOM Controlled Terminology




Drug-drug Interaction and Drug-drug Interaction Evidence Ontology DIDEO The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology Fri Apr 06 02:14:04 BST 2018 Search
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The Drug-Drug Interactions Ontology DINTO A formal represention for drug-drug interactions knowledge. Search
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Human Disease Ontology DOID The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts. Mon Nov 05 12:21:43 GMT 2018 Search
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Drosophila Phenotype Ontology FBcv An ontology of commonly encountered and/or high level Drosophila phenotypes. Mon Oct 31 15:28:47 GMT 2016 Search
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The Drug Ontology DRON An ontology to support comparative effectiveness researchers studying claims data. Fri Dec 16 15:18:55 GMT 2016 Search
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The Data Use Ontology DUO DUO is an ontology which represent data use conditions. Tue Oct 17 02:51:02 BST 2017 Search
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Evidence & Conclusion Ontology (ECO) ECO The Evidence & Conclusion Ontology (ECO) describes types of scientific evidence within the biological research domain that arise from laboratory experiments, computational methods, literature curation, or other means. Wed Nov 14 10:54:33 GMT 2018 Search
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An ontology of core ecological entities ECOCORE An ontology to provide core semantics for ecological entities. Wed Sep 12 06:46:28 BST 2018 Search
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Bioinformatics operations, data types, formats, identifiers and topics EDAM EDAM is a simple ontology of well established, familiar concepts that are prevalent within bioinformatics, including types of data and data identifiers, data formats, operations and topics. EDAM provides a set of terms with synonyms and definitions - organised into an intuitive hierarchy for convenient use. Wed Aug 01 03:08:05 BST 2018 Search
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Experimental Factor Ontology EFO The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for external projects such as the NHGRI GWAS catalogue. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by many groups at the EBI and as the core ontology for OpenTargets.org Fri Nov 16 06:26:53 GMT 2018 Search
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Human developmental anatomy, abstract EHDAA2 A structured controlled vocabulary of stage-specific anatomical structures of the developing human. Mon Nov 14 01:36:11 GMT 2016 Search
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Mouse gross anatomy and development, timed EMAP A structured controlled vocabulary of stage-specific anatomical structures of the mouse (Mus). Tue Dec 11 04:29:26 GMT 2018 Search
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Mouse gross anatomy and development, timed EMAPA Abstract (i.e. non-stage specific) stage-specific anatomical structures of the mouse. Mon Oct 01 05:45:25 BST 2018 Search
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eNanoMapper Ontology ENM The eNanoMapper project (www.enanomapper.net) is creating a pan-European computational infrastructure for toxicological data management for ENMs, based on semantic web standards and ontologies. > This ontology is an application ontology targeting the full domain of nanomaterial safety assessment. It re-uses several other ontologies including the NPO, CHEMINF, ChEBI, and ENVO. Fri Sep 28 03:37:09 BST 2018 Search
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Ensembl Glossary ENSGLOSS The Ensembl glossary lists the terms, data types and file types that are used in Ensembl and describes how they are used. Wed Aug 22 03:43:39 BST 2018 Search
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Environment Ontology ENVO Ontology of environmental features and habitats Tue May 29 03:30:49 BST 2018 Search
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Plant Environment Ontology EO A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments. Wed Jun 07 06:22:50 BST 2017 Search
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Environment Ontology for Livestock EOL L'ontologie EOL décrit les conditions d'environnement des élevages d'animaux domestiques. Elle décrit plus particulièrement les modalités de l'alimentation, de l'environnement, de la structure des élevages et des systèmes d'élevage Thu Sep 13 04:35:21 BST 2018 Search
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Epidemiology Ontology EPO An ontology designed to support the semantic annotation of epidemiology resources Wed Mar 23 14:27:13 GMT 2016 Search
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eagle-i resource ontology ERO An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens. Wed Jul 27 07:04:31 BST 2016 Search
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EuPathDB ontology EUPATH An ontology is developed to support Eukaryotic Pathogen Database Bioinformatics Resource Center sites (EuPathDB; http://eupathdb.org). Wed Jul 11 15:40:40 BST 2018 Search
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Exposure ontology EXO Vocabularies for describing exposure data to inform understanding of environmental health. Mon Nov 07 01:48:42 GMT 2016 Search
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Fungal gross anatomy FAO A structured controlled vocabulary for the anatomy of fungi. Mon Oct 22 04:18:16 BST 2018 Search
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Biological Imaging Methods Ontology FBbi A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research. Fri Dec 07 05:23:02 GMT 2018 Search
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Drosophila gross anatomy FBbt An ontology representing the gross anatomy of Drosophila melanogaster. Thu Oct 04 05:28:41 BST 2018 Search
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FlyBase Controlled Vocabulary FBcv A structured controlled vocabulary used for various aspects of annotation by FlyBase. Thu Jan 04 02:44:29 GMT 2018 Search
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Drosophila development FBdv A structured controlled vocabulary of the development of Drosophila melanogaster. Mon Oct 17 02:16:09 BST 2016 Search
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Physico-chemical methods and properties FIX An ontology of physico-chemical methods and properties. Tue Dec 11 04:47:44 GMT 2018 Search
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Flora Phenotype Ontology FLOPO Traits and phenotypes of flowering plants occurring in digitized Floras Mon May 16 05:11:19 BST 2016 Search
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Influenza ontology FLU The influenza ontology is an application ontology that covers the natural, experimental and clinical realms related to influenza virus life cycle, infection and disease. It is an extension of the infectious disease ontology (IDO). Wed Mar 21 04:02:34 GMT 2018 Search
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Foundational Model of Anatomy Ontology (subset) FMA This is currently a slimmed down version of FMA Tue Dec 11 05:08:36 GMT 2018 Search
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Food Ontology FOODON FoodOn (http://foodon.org) is a consortium-driven project to build a comprehensive and easily accessible global farm-to-fork ontology about food, that accurately and consistently describes foods commonly known in cultures from around the world. Fri Nov 30 06:46:46 GMT 2018 Search
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Fission Yeast Phenotype Ontology FYPO FYPO is a formal ontology of phenotypes observed in fission yeast. Mon Dec 10 04:06:30 GMT 2018 Search
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Gazetteer GAZ A gazetteer constructed on ontological principles Tue Jun 26 07:53:08 BST 2018 Search
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Genomic Epidemiology Ontology GENEPIO The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks. Tue Aug 07 22:49:02 BST 2018 Search
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Genotype Ontology GENO An integrated ontology for representing the genetic variations described in genotypes, and their causal relationships to phenotype and diseases. Thu Aug 30 04:42:58 BST 2018 Search
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Geographical Entity Ontology GEO An ontology of geographical entities Wed Sep 14 16:17:48 BST 2016 Search
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Gene Expression Ontology GeXO Gene Expression Ontology Thu Apr 20 01:35:44 BST 2017 Search
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Gene Ontology GO An ontology for describing the function of genes and gene products Mon Dec 10 04:28:08 GMT 2018 Search
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Human Ancestry Ontology HANCESTRO The Human Ancestry Ontology (HANCESTRO) provides a systematic description of the ancestry concepts used in the NHGRI-EBI Catalog of published genome-wide association studies. Mon Nov 26 04:45:09 GMT 2018 Search
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Hymenoptera Anatomy Ontology HAO A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants) Fri Apr 27 03:04:42 BST 2018 Search
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Homology Ontology HOM This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology. Mon Nov 14 02:28:13 GMT 2016 Search
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human phenotype ontology HP A structured and controlled vocabulary for the phenotypic features encountered in human hereditary and other disease. Wed Oct 10 05:14:22 BST 2018 Search
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Human Developmental Stages HSAPDV Life cycle stages for Human Fri Dec 07 06:59:21 GMT 2018 Search
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Information Artifact Ontology IAO An ontology of information entities. Mon Mar 27 02:15:02 BST 2017 Search
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Informed Consent Ontology ICO The Informed Consent Ontology (ICO) is an ontology for the informed consent and informed consent process in the medical field. Fri Mar 02 03:32:58 GMT 2018 Search
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Infectious Disease Ontology IDO A set of interoperable ontologies that will together provide coverage of the infectious disease domain. IDO core is the upper-level ontology that hosts terms of general relevance across the domain, while extension ontologies host terms to specific to a particular part of the domain. Mon Nov 06 03:29:38 GMT 2017 Search
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Malaria Ontology IDOMAL An application ontology to cover all aspects of malaria as well as the intervention attempts to control it. Mon Nov 14 02:41:04 GMT 2016 Search
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INO: Interaction Network Ontology INO he Interaction Network Ontology (INO) is an ontology in the domain of interactions and interaction networks. INO represents general and species-neutral types of interactions and interaction networks, and their related elements and relations. INO is a community-driven ontology, aligns with BFO, and is developed by following the OBO Foundry principles. Thu Jul 26 12:44:49 BST 2018 Search
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Kinetic Simulation Algorithm Ontology KISAO A classification of algorithms available for the simulation of models in biology. Wed Mar 21 05:11:59 GMT 2018 Search
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Livestock Breed Ontology LBO A vocabulary for cattle, chicken, horse, pig, and sheep breeds. Tue Nov 27 05:31:49 GMT 2018 Search
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Mouse adult gross anatomy MA A structured controlled vocabulary of the adult anatomy of the mouse (Mus). Wed Feb 08 02:04:29 GMT 2017 Search
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Mathematical Modelling Ontology MAMO The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features. Tue Feb 21 02:33:19 GMT 2017 Search
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Mental Functioning Ontology MF The Mental Functioning Ontology is an overarching ontology for all aspects of mental functioning. Fri Nov 02 16:29:13 GMT 2018 Search
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Mammalian Feeding Muscle Ontology MFMO The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors. Wed Mar 23 15:38:20 GMT 2016 Search
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Emotion Ontology MFOEM An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings. Mon Oct 30 03:41:14 GMT 2017 Search
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Mental Disease Ontology MFOMD The Mental Disease Ontology is developed to facilitate representation for all aspects of mental disease. It is an extension of the Ontology for General Medical Science (OGMS) and Mental Functioning Ontology (MF). Mon Sep 11 03:17:31 BST 2017 Search
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Molecular Interactions Controlled Vocabulary MI A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. Fri Dec 07 07:17:25 GMT 2018 Search
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Minimum Information for A Phylogenetic Analysis (MIAPA) Ontology MIAPA The MIAPA ontology is intended to be an application ontology for the purpose of semantic annotation of phylogenetic data according to the requirements and recommendations of the Minimum Information for A Phylogenetic Analysis (MIAPA) metadata reporting standard. The ontology leverages (imports) primarily from the CDAO (Comparative Data Analysis Ontology), PROV (W3C Provenance Ontology), and SWO (Software Ontology, which includes the EDAM ontologies) ontologies. It adds some assertions of its own, as well as some classes and individuals that may eventually get pushed down into one of the respective source ontologies. This ontology is maintained at http://github.com/miapa/miapa, and requests for changes or additions should be filed at the issue tracker there. The discussion list is at miapa-discuss@googlegroups.com. Further resources about MIAPA can be found at the project's main page at http://evoio.org/wiki/MIAPA. Tue May 09 01:35:20 BST 2017 Search
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Ontology of Prokaryotic Phenotypic and Metabolic Characters MICRO An ontology of prokaryotic phenotypic and metabolic characters Fri Jun 15 07:04:54 BST 2018 Search
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microRNA Ontology MIRNAO An application ontology for use with miRNA databases. Wed Mar 23 15:47:05 GMT 2016 Search
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Mosquito insecticide resistance MIRO Application ontology for entities related to insecticide resistance in mosquitos Mon Nov 14 03:00:31 GMT 2016 Search
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Measurement method ontology MMO A representation of the variety of methods used to make clinical and phenotype measurements. Fri Dec 07 07:35:12 GMT 2018 Search
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Mouse Developmental Stages MMUSDV Life cycle stages for Mus Musculus Fri Dec 07 07:53:18 GMT 2018 Search
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Protein modification MOD PSI-MOD is an ontology consisting of terms that describe protein chemical modifications Mon Dec 10 04:47:38 GMT 2018 Search
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MONDO: Monarch Disease Ontology MONDO An ontology that harmonizes multiple disease resources. Thu Dec 06 11:15:13 GMT 2018 Search
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Molecular Process Ontology MOP Processes at the molecular level Wed Aug 17 02:18:57 BST 2016 Search
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The Mammalian Phenotype Ontology MP The Mammalian Phenotype Ontology is being developed by Cynthia L. Smith, Susan M. Bello, Carroll W. Goldsmith and Janan T. Eppig, as part of the Mouse Genome Database (MGD) Project, Mouse Genome Informatics (MGI), The Jackson Laboratory, Bar Harbor, ME. This file contains pre-coordinated phenotype terms, definitions and synonyms that can be used to describe mammalian phenotypes. The ontology is represented as a directed acyclic graph (DAG). It organizes phenotype terms into major biological system headers such as nervous system and respiratory system. This ontology is currently under development. Weekly updates are available at the Mouse Genome Informatics (MGI) ftp site (ftp://ftp.informatics.jax.org/pub/reports/index.html#pheno) as well as the OBO Foundry site (http://obofoundry.org/). Questions, comments and suggestions are welcome, and should be directed to pheno@jax.org, Susan.Bello@jax.org or to GitHub tracker (https://github.com/obophenotype/mammalian-phenotype-ontology/issues) MGD is funded by NIH/NHGRI grant HG000330. Mon Nov 26 05:38:22 GMT 2018 Search
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Mouse pathology ontology MPATH A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes Tue Dec 11 05:26:28 GMT 2018 Search
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Minimum PDDI Information Ontology MPIO An ontology of minimum information regarding potential drug-drug interaction information. Mon Jan 15 06:16:15 GMT 2018 Search
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MHC Restriction Ontology MRO The MHC Restriction Ontology is an application ontology capturing how Major Histocompatibility Complex (MHC) restriction is defined in experiments, spanning exact protein complexes, individual protein chains, serotypes, haplotypes and mutant molecules, as well as evidence for MHC restrictions. Fri Dec 16 03:04:56 GMT 2016 Search
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Mass spectrometry ontology MS A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry. Mon Dec 10 05:25:50 GMT 2018 Search
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Metabolomics Standards Initiative Ontology (MSIO) MSIO an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies. Mon Nov 05 14:54:01 GMT 2018 Search
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Neuro Behavior Ontology NBO An ontology of human and animal behaviours and behavioural phenotypes Tue May 15 08:50:59 BST 2018 Search
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NCBI organismal classification NCBITAXON An ontology representation of the NCBI organismal taxonomy Tue Dec 11 06:44:30 GMT 2018 Search
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NCI Thesaurus OBO Edition NCIT The NCIt OBO Edition project aims to increase integration of the NCIt with OBO Library ontologies. NCIt is a reference terminology that includes broad coverage of the cancer domain, including cancer related diseases, findings and abnormalities. NCIt OBO Edition releases should be considered experimental. Tue Nov 06 20:14:41 GMT 2018 Search
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Non-Coding RNA Ontology NCRO An ontology for non-coding RNA, both of biological origin, and engineered. Wed Mar 23 17:07:15 GMT 2016 Search
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nuclear magnetic resonance CV NMR This artefact is an MSI-approved controlled vocabulary primarily developed under COSMOS EU and PhenoMeNal EU governance. The nmrCV is supporting the nmrML XML format with standardized terms. nmrML is a vendor agnostic open access NMR raw data standard. Its primaly role is analogous to the mzCV for the PSI-approved mzML XML format. It uses BFO2.0 as its Top level. This CV was derived from two predecessors (The NMR CV from the David Wishart Group, developed by Joseph Cruz) and the MSI nmr CV developed by Daniel Schober at the EBI. This simple taxonomy of terms (no DL semantics used) serves the nuclear magnetic resonance markup language (nmrML) with meaningful descriptors to amend the nmrML xml file with CV terms. Metabolomics scientists are encouraged to use this CV to annotrate their raw and experimental context data, i.e. within nmrML. The approach to have an exchange syntax mixed of an xsd and CV stems from the PSI mzML effort. The reason to branch out from an xsd into a CV is, that in areas where the terminology is likely to change faster than the nmrML xsd could be updated and aligned, an externally and decentrallised maintained CV can accompensate for such dynamics in a more flexible way. A second reason for this set-up is that semantic validity of CV terms used in an nmrML XML instance (allowed CV terms, position/relation to each other, cardinality) can be validated by rule-based proprietary validators: By means of cardinality specifications and XPath expressions defined in an XML mapping file (an instances of the CvMappingRules.xsd ), one can define what ontology terms are allowed in a specific location of the data model. Mon Nov 13 03:27:45 GMT 2017 Search
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OAE: Ontology of Adverse Events OAE The Ontology of Adverse Eventsy (OAE) is a biomedical ontology in the domain of adverse events. OAE aims to standardize adverse event annotation, integrate various adverse event data, and support computer-assisted reasoning. OAE is a community-based ontology. Its development follows the OBO Foundry principles. Vaccine adverse events have been used as an initial testing use case. OAE also studies adverse events associated with the administration of drug and nutritional products, the operation of surgeries, and the usage of medical devices, etc. Fri Sep 28 05:45:43 BST 2018 Search
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Ontology of Arthropod Circulatory Systems OARCS OArCS is an ontology describing the Arthropod ciruclatory system. Wed Mar 08 03:09:22 GMT 2017 Search
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Ontology of Biological Attributes OBA A collection of biological attributes (traits) covering all kingdoms of life. Mon Sep 03 06:38:57 BST 2018 Search
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Ontology of Biological and Clinical Statistics OBCS OBCS stands for the Ontology of Biological and Clinical Statistics. OBCS is an ontology in the domain of biological and clinical statistics. It is aligned with the Basic Formal Ontology (BFO) and the Ontology for Biomedical Investigations (OBI). OBCS imports all possible biostatistics terms in OBI and includes many additional biostatistics terms, some of which were proposed and discussed in the OBI face-to-face workshop in Ann Arbor in 2012. Thu Mar 01 03:11:05 GMT 2018 Search
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Ontology for Biomedical Investigations OBI The Ontology for Biomedical Investigations (OBI) is build in a collaborative, international effort and will serve as a resource for annotating biomedical investigations, including the study design, protocols and instrumentation used, the data generated and the types of analysis performed on the data. This ontology arose from the Functional Genomics Investigation Ontology (FuGO) and will contain both terms that are common to all biomedical investigations, including functional genomics investigations and those that are more domain specific. Wed Sep 05 05:08:29 BST 2018 Search
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Ontology for BIoBanking (OBIB) OBIB An ontology built for annotation and modeling of biobank repository and biobanking administration Wed Apr 25 02:37:47 BST 2018 Search
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OGG: Ontology of Genes and Genomes OGG OGG is a biological ontology in the area of genes and genomes. OGG uses the Basic Formal Ontology (BFO) as its upper level ontology. This OGG document contains the genes and genomes of a list of selected organisms, including human, two viruses (HIV and influenza virus), and bacteria (B. melitensis strain 16M, E. coli strain K-12 substrain MG1655, M. tuberculosis strain H37Rv, and P. aeruginosa strain PAO1). More OGG information for other organisms (e.g., mouse, zebrafish, fruit fly, yeast, etc.) may be found in other OGG subsets. Fri Jul 28 03:15:31 BST 2017 Search
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Ontology for genetic interval OGI OGI formalized the genomic element by defining an upper class 'genetic interval'. The definition of 'genetic interval' is "the spatial continuous physical entity which contains ordered genomic sets(DNA, RNA, Allele, Marker,etc.) between and including two points (Nucleic Acid Base Residue) on a chromosome or RNA molecule which must have a liner primary sequence sturcture." Related paper: 1. Yu Lin, Norihiro Sakamoto (2009) “Genome, Gene, Interval and Ontology” Interdisciplinary Ontology Vol.2 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2009. Page(s):25-34 (http://cdb-riken.academia.edu/LinYu/Papers/142399/Genome_Gene_Interval_and_Ontology) Yu Lin, Hiroshi Tarui, Peter Simons (2009) “From Ontology for Genetic Interval(OGI) to Sequence Assembly – Ontology apply to next generation sequencing” Proceeding of the Semantic Web Applications and Tools for Life Science Workshop, Amsterdam, Nov.20th, 2009. (http://ceur-ws.org/Vol-559/Poster2.pdf) Yu Lin, Peter Simons (2010) “DNA sequence from below: A Nominalist Approach” Interdisciplinary Ontology Vol.3 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2010. (http://philpapers.org/rec/LINDSF) Wed Mar 23 17:37:20 GMT 2016 Search
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Ontology for General Medical Science OGMS An ontology for representing treatment of disease and diagnosis and on carcinomas and other pathological entities Wed Nov 15 05:05:11 GMT 2017 Search
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Ontology of Genetic Susceptibility Factors (OGSF) OGSF The Ontology of Genetic Susceptibility Factors (OGSF) is an ontology that represents various types of genetic susceptibility and genetic susceptibility factors and their relations with different diseases and pathological bodily processes (e.g., vaccine adverse events). Wed Mar 23 17:45:31 GMT 2016 Search
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The Oral Health and Disease Ontology OHD The Oral Health and Disease Ontology was created, initially, to represent the content of dental practice health records. Wed Jan 04 01:12:12 GMT 2017 Search
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OHMI: Ontology of Host-Microbiome Interactions OHMI OHMI is a biomedical ontology that represents the entities and relations in the domain of host-microbiome interactions. Thu Mar 01 03:49:01 GMT 2018 Search
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Medaka Developmental Stages OLATDV Life cycle stages for Medaka Fri Dec 07 08:49:53 GMT 2018 Search
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Ontologized MIABIS OMIABIS An ontological version of MIABIS (Minimum Information About BIobank data Sharing) Mon May 23 07:23:55 BST 2016 Search
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Ontology for MIRNA Target OMIT Ontology to establish data exchange standards and common data elements in the microRNA (miR) domain Mon Aug 13 14:59:43 BST 2018 Search
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Ontology of Microbial Phenotypes OMP An ontology of phenotypes covering microbes Mon Dec 10 05:45:17 GMT 2018 Search
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Ontology of Medically Related Social Entities OMRSE This ontology covers the domain of social entities that are related to health care, such as demographic information and the roles of various individuals and organizations. Tue Jul 17 05:28:16 BST 2018 Search
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Obstetric and Neonatal Ontology ONTONEO The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby. Fri Jul 28 03:27:38 BST 2017 Search
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Ontology of Organizational Structures of Trauma centers and Trauma Systems OOSTT An ontology built for representating the organizational components of trauma centers and trauma systems. Wed Sep 13 04:13:25 BST 2017 Search
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Ontology for Parasite LifeCycle OPL A reference ontology for parasite life cycle stages. Wed Mar 23 18:09:15 GMT 2016 Search
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Orphanet Rare Disease Ontolog ORDO The Orphanet Rare Disease ontology (ORDO) is jointly developed by Orphanet and the EBI to provide a structured vocabulary for rare diseases capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases. It derived from the Orphanet database (www.orpha.net ) , a multilingual database dedicated to rare diseases populated from literature and validated by international experts. It integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA),databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) or classifications (ICD10). Thu Nov 22 08:42:11 GMT 2018 Search
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OVAE: Ontology of Vaccine Adverse Events OVAE OVAE is a biomedical ontology in the area of vaccine adverse events. OVAE is an extension of the community-based Ontology of Adverse Events (OAE). Mon Apr 25 02:43:14 BST 2016 Search
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Phenotype And Trait Ontology PATO An ontology of phenotypic qualities (properties, attributes or characteristics) Wed Nov 14 17:46:54 GMT 2018 Search
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Population and Community Ontology PCO An ontology about groups of interacting organisms such as populations and communities Tue Nov 07 04:38:03 GMT 2017 Search
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The Prescription of Drugs Ontology PDRO An ontology to describe entities related to prescription of drugs Thu Jul 26 15:01:44 BST 2018 Search
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Platynereis Developmental Stages PDUMDV Life cycle stages for Platynereis dumerilii Fri Dec 07 09:08:31 GMT 2018 Search
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Plant Experimental Conditions Ontology PECO A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments. Fri Aug 17 10:48:01 BST 2018 Search
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PHI-base Ontology PHI Pathogen-Host Interaction database Ontology used by Ensembl Mon Dec 10 09:03:07 GMT 2018 Search
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Pathogen Host Interaction Phenotype Ontology PHIPO PHIPO is a formal ontology of species-neutral phenotypes observed in pathogen-host interactions. Fri Dec 07 09:45:57 GMT 2018 Search
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planaria-ontology PLANA planaria-ontology is an ontology for planarian anatomy and developmental stages of S.med Mon Dec 10 06:04:28 GMT 2018 Search
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Plant Ontology PO The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data. Wed Sep 26 09:51:32 BST 2018 Search
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Porifera (sponge) ontology PORO An ontology describing the anatomical structures and characteristics of Porifera (sponges) Thu Sep 15 03:05:04 BST 2016 Search
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Plant Phenology Ontology PPO An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales. Tue Oct 30 05:07:24 GMT 2018 Search
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PRotein Ontology (PRO) PR An ontological representation of protein-related entities Thu Feb 22 04:51:16 GMT 2018 Search
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PRIDE Controlled Vocabulary PRIDE The PRIDE PRoteomics IDEntifications (PRIDE) database is a centralized, standards compliant, public data repository for proteomics data, including protein and peptide identifications, post-translational modifications and supporting spectral evidence. Fri Aug 31 22:13:33 BST 2018 Search
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Probability Distribution Ontology PROBONTO ProbOnto, is an ontology-based knowledge base of probability distributions, featuring more than eighty uni- and multivariate distributions with their defining functions, characteristics, relationships and reparameterisation formulas. Wed May 17 12:18:40 BST 2017 Search
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Pathway ontology PW A controlled vocabulary for annotating gene products to pathways. Wed Aug 22 06:38:41 BST 2018 Search
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Regulation of Transcription Ontology ReTO Regulation of Transcription Thu Jan 19 03:18:16 GMT 2017 Search
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Physico-chemical process REX An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time. Mon Nov 20 05:52:04 GMT 2017 Search
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Regulation of Gene Expression Ontology ReXO Regulation of Gene Expression Thu Jan 19 03:44:34 GMT 2017 Search
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The RNA Ontology (RNAO): An Ontology for Integrating RNA Sequence and Structure Data RNAO Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures. Tue Nov 08 03:21:05 GMT 2016 Search
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OBO Relations Ontology RO The OBO Relations Ontology (RO) is a collection of OWL relations (ObjectProperties) intended for use across a wide variety of biological ontologies. Mon Oct 22 06:39:09 BST 2018 Search
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Rat Strain Ontology RS Ontology of rat strains Fri Dec 07 10:04:56 GMT 2018 Search
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Name Reaction Ontology RXNO Connects organic name reactions to their roles in an organic synthesis and to processes in MOP Thu Jul 27 04:17:34 BST 2017 Search
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Systems Biology Ontology SBO Terms commonly used in Systems Biology, and in particular in computational modeling. Tue Dec 11 07:03:10 GMT 2018 Search
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Sickle Cell Disease Ontology SCDO The Sickle Cell Disease Ontology (SCDO) project is a collaboration between H3ABioNet (Pan African Bioinformatics Network) and SPAN (Sickle Cell Disease Pan African Network). The SCDO is currently under development and its purpose is to 1) establish community standardized SCD terms and descriptions, 2) establish canonical and hierarchical representation of knowledge on SCD and 3) link to other ontologies and bodies of work such as DO, PhenX MeSH, ICD, NCI’s thesaurus, SNOMED and OMIM. Mon Jun 18 12:38:27 BST 2018 Search
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Sustainable Development Goals Interface Ontology SDGIO An OBO-compliant ontology representing the entities referenced by the SDGs, their targets, and indicators. Mon Aug 13 15:45:22 BST 2018 Search
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Sample processing and separation techniques SEP A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments. Tue Nov 08 03:28:36 GMT 2016 Search
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Scientific Evidence and Provenance Information Ontology SEPIO An ontology for representing the provenance of scientific claims and the evidence that supports them. Search
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Social Insect Behavior Ontology SIBO Social Behavior in insects Wed Mar 23 20:03:52 GMT 2016 Search
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Semanticscience Integrated Ontology SIO The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their attributes. Fri Apr 13 03:22:04 BST 2018 Search
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Sequence types and features ontology SO A structured controlled vocabulary for sequence annotation, for the exchange of annotation data and for the description of sequence objects in databases. Fri Sep 14 10:10:11 BST 2018 Search
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Spider Ontology SPD An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow). Fri Dec 01 06:39:53 GMT 2017 Search
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STATO: the statistical methods ontology STATO STATO is the statistical methods ontology. It contains concepts and properties related to statistical methods, probability distributions and other concepts related to statistical analysis, including relationships to study designs and plots. Fri Sep 07 04:55:31 BST 2018 Search
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Bioinformatics operations, data types, formats, identifiers and topics SWO The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community. Mon Feb 13 03:14:15 GMT 2017 Search
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Symptom Ontology SYMP An ontology of disease symptoms, with symptoms encompasing perceived changes in function, sensations or appearance reported by a patient indicative of a disease. Tue May 15 09:57:49 BST 2018 Search
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Tick Anatomy Ontology TADS The anatomy of the Tick, <i>Families: Ixodidae, Argassidae</i> Tue Nov 08 03:49:22 GMT 2016 Search
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Taxonomic rank vocabulary TAXRANK A vocabulary of taxonomic ranks (species, family, phylum, etc) Mon Apr 18 14:03:17 BST 2016 Search
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Terminology for Description of Dynamics TEDDY TEDDY is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems and Synthetic Biology. Wed Mar 21 07:22:45 GMT 2018 Search
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Mosquito gross anatomy ontology TGMA A structured controlled vocabulary of the anatomy of mosquitoes. Tue Nov 08 03:56:14 GMT 2016 Search
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Plant Trait Ontology TO A controlled vocabulary of describe phenotypic traits in plants. Wed Sep 26 11:03:46 BST 2018 Search
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Pathogen Transmission Ontology TRANS An ontology representing the disease transmission process during which the pathogen is transmitted directly or indirectly from its natural reservoir, a susceptible host or source to a new host. Wed Mar 22 03:39:48 GMT 2017 Search
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Teleost taxonomy ontology TTO An ontology covering the taxonomy of teleosts (bony fish) Mon Mar 26 07:18:51 BST 2018 Search
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Uber-anatomy ontology UBERON Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data. Wed Nov 28 12:45:20 GMT 2018 Search
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Unimod protein modification database for mass spectrometry UNIMOD Unimod is a community supported, comprehensive database of protein modifications for mass spectrometry applications. That is, accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by all types of natural and artificial modifications. Other important information includes any mass change, (neutral loss), that occurs during MS/MS analysis, an d site specificity, (which residues are susceptible to modification and any constraints on the position of the modification within the protein or peptide). Thu Nov 15 06:27:00 GMT 2018 Search
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Units of measurement ontology UO Metrical units for use in conjunction with PATO Fri Dec 07 10:42:11 GMT 2018 Search
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Combined phenotype ontology UPHENO The Uberpheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology. Tue Oct 31 04:30:26 GMT 2017 Search
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Variation Ontology VARIO Variation Ontology, VariO, is an ontology for standardized, systematic description of effects, consequences and mechanisms of variations. Wed Nov 14 20:00:23 GMT 2018 Search
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Vaccine Ontology VO The Vaccine Ontology (VO) is a biomedical ontology in the domain of vaccine and vaccination. VO aims to standardize vaccine annotation, integrate various vaccine data, and support computer-assisted reasoning. VO supports basic vaccine R&D and clincal vaccine usage. VO is initiated and primarily developed by Dr. Yongqun "Oliver" He at the University of Michigan Medical School. VO is being developed as a community-based ontology with support and collaborations from the vaccine and bio-ontology communities. Mon Dec 03 06:24:24 GMT 2018 Search
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Vertebrate trait ontology VT An ontology of traits covering vertebrates Fri Dec 02 03:12:13 GMT 2016 Search
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Vertebrate Taxonomy Ontology VTO Comprehensive hierarchy of extinct and extant vertebrate taxa. Mon Jul 17 06:17:09 BST 2017 Search
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C. elegans Gross Anatomy Ontology WBbt A structured controlled vocabulary of the anatomy of <i>Caenorhabditis elegans</i>. Mon Oct 22 07:15:44 BST 2018 Search
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C. elegans development ontology WBLS A structured controlled vocabulary of the development of <i>Caenorhabditis elegans</i>. Fri Dec 07 11:00:43 GMT 2018 Search
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C. elegans phenotype WBPhenotype A structured controlled vocabulary of <i>Caenorhabditis elegans</i> phenotypes Fri Dec 07 11:19:18 GMT 2018 Search
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Xenopus Anatomy Ontology XAO Anatomy and development of the African clawed frog (<i>Xenopus laevis</i>). Mon Jun 18 05:06:47 BST 2018 Search
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Experimental condition ontology XCO Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms. Fri Dec 07 11:37:42 GMT 2018 Search
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Cross-linker reagents ontology XL A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry. Search
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HUPO-PSI cross-linking and derivatization reagents controlled vocabulary XLMOD A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry. Search
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Zebrafish Experimental Conditions Ontology ZECO Experimental conditions applied to zebrafish, developed to facilitate experiment condition annotation at ZFIN Thu Nov 09 04:05:37 GMT 2017 Search
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Zebrafish anatomy and development ontology ZFA A structured controlled vocabulary of the anatomy and development of the Zebrafish Fri Dec 07 11:56:48 GMT 2018 Search
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Zebrafish developmental stages ontology ZFS Developmental stages of the Zebrafish Fri Dec 07 12:15:28 GMT 2018 Search
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