List of all ontologies in OLS
| Ontology Name | Short name | Description | Loaded | Action |
|---|---|---|---|---|
| Alzheimer's Disease Ontology (ADO) | ADO | Alzheimer's Disease Ontology is a knowledge-based ontology that encompasses varieties of concepts related to Alzheimer'S Disease, foundamentally structured by upper level Basic Formal Ontology(BFO). This Ontology is enriched by the interrelational entities that demonstrate the nextwork of the understanding on Alzheimer's disease and can be readily applied for text mining. | Tue Jun 28 17:23:14 BST 2022 |
Search Terms Properties Individuals Download |
| Anatomical Entity Ontology | AEO | AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology | Thu Aug 05 00:35:46 BST 2021 |
Search Terms Properties Individuals Download |
| Allotrope Merged Ontology Suite | AFO | Allotrope Merged Ontology Suite | Tue May 28 16:48:55 BST 2019 |
Search Terms Properties Individuals Download |
| Agronomy Ontology | AGRO | AgrO is an ontlogy for representing agronomic practices, techniques, variables and related entities | Thu Mar 03 00:31:45 GMT 2022 |
Search Terms Properties Individuals Download |
| Ontology for the Anatomy of the Insect SkeletoMuscular system | AISM | The ontology for the Anatomy of the Insect SkeletoMuscular system (AISM) contains terms used to describe the cuticle - as a single anatomical structure - and the skeletal muscle system, to be used in insect biodiversity research. | Tue Jun 28 18:17:15 BST 2022 |
Search Terms Properties Individuals Download |
| Amphioxus Development and Anatomy Ontology (AMPHX) | AMPHX | An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum). | Tue Nov 09 05:14:38 GMT 2021 |
Search Terms Properties Individuals Download |
| Ascomycete Phenotype Ontology (APO) | APO | A structured controlled vocabulary for the phenotypes of Ascomycete fungi. | Mon Jul 11 14:01:18 BST 2022 |
Search Terms Properties Individuals Download |
| Apollo Structured Vocabulary (Apollo-SV) | APOLLO_SV | Defines terms and relations necessary for interoperation between epidemic models and public health application software that interface with these models | Tue Apr 19 12:25:38 BST 2022 |
Search Terms Properties Individuals Download |
| Antibiotic Resistance Ontology | ARO | Antibiotic resistance genes and mutations | Mon Aug 01 11:34:00 BST 2022 |
Search Terms Properties Individuals Download |
| Animal Trait Ontology for Livestock | ATOL | ATOL (Animal Trait Ontology for Livestock) is an ontology of characteristics defining phenotypes of livestock in their environment (EOL). ATOL aims to: - provide a reference ontology of phenotypic traits of farm animals for the international scientificand educational - communities, farmers, etc.; - deliver this reference ontology in a language which can be used by computers in order to support database management, semantic analysis and modeling; - represent traits as generic as possible for livestock vertebrates; - make the ATOL ontology as operational as possible and closely related to measurement techniques; - structure the ontology in relation to animal production. | Thu Sep 13 02:18:31 BST 2018 |
Search Terms Properties Individuals Download |
| BioAssay Ontology | BAO | The BioAssay Ontology (BAO) describes biological screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis. BAO is an extensible, knowledge-based, highly expressive (currently SHOIQ(D)) description of biological assays making use of descriptive logic based features of the Web Ontology Language (OWL). BAO currently has over 700 classes and also makes use of several other ontologies. It describes several concepts related to biological screening, including Perturbagen, Format, Meta Target, Design, Detection Technology, and Endpoint. Perturbagens are perturbing agents that are screened in an assay; they are mostly small molecules. Assay Meta Target describes what is known about the biological system and / or its components interrogated in the assay (and influenced by the Perturbagen). Meta target can be directly described as a molecular entity (e.g. a purified protein or a protein complex), or indirectly by a biological process or event (e.g. phosphorylation). Format describes the biological or chemical features common to each test condition in the assay and includes biochemical, cell-based, organism-based, and variations thereof. The assay Design describes the assay methodology and implementation of how the perturbation of the biological system is translated into a detectable signal. Detection Technology relates to the physical method and technical details to detect and record a signal. Endpoints are the final HTS results as they are usually published (such as IC50, percent inhibition, etc). BAO has been designed to accommodate multiplexed assays. All main BAO components include multiple levels of sub-categories and specification classes, which are linked via object property relationships forming an expressive knowledge-based representation. | Fri Sep 16 17:16:20 BST 2022 |
Search Terms Properties Individuals Download |
| The Behaviour Change Intervention Ontology | BCIO | The Behaviour Change Intervention Ontology is an ontology for all aspects of human behaviour change interventions and their evaluation. | Wed May 04 13:20:37 BST 2022 |
Search Terms Properties Individuals Download |
| Biological Collections Ontology | BCO | An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys. | Mon Jan 17 06:32:32 GMT 2022 |
Search Terms Properties Individuals Download |
| Basic Formal Ontology | BFO | The upper level ontology upon which OBO Foundry ontologies are built. | Fri Aug 14 17:48:30 BST 2020 |
Search Terms Properties Individuals Download |
| Biological Spatial Ontology | BSPO | An ontology for respresenting spatial concepts, anatomical axes, gradients, regions, planes, sides and surfaces. These concepts can be used at multiple biological scales and in a diversity of taxa, including plants, animals and fungi. The BSPO is used to provide a source of anatomical location descriptors for logically defining anatomical entity classes in anatomy ontologies. | Tue Jun 28 19:09:13 BST 2022 |
Search Terms Properties Individuals Download |
| The BRENDA Tissue Ontology (BTO) | BTO | A structured controlled vocabulary for the source of an enzyme comprising tissues, cell lines, cell types and cell cultures. | Wed Oct 27 01:09:18 BST 2021 |
Search Terms Properties Individuals Download |
| Common Anatomy Reference Ontology | CARO | None | Fri Feb 25 00:26:07 GMT 2022 |
Search Terms Properties Individuals Download |
| Human Reference Atlas Common Coordinate Framework Ontology | CCF | The Common Coordinate Framework (CCF) Ontology is an application ontology built to support the development of the Human Reference Atlas (HRA). It unifies vocabulary for HRA construction and usage—making it possible to ingest external data sources; supporting uniform tissue sample registration that includes the spatial positioning and semantic annotations within 3D reference organs; and supporting user-formulated cross-domain queries over tissue donor properties, anatomical structures, cell types, biomarkers, and 3D space. The CCF Ontology consists of three major ontologies. The Biological Structure Ontology records anatomical structures, cell types, and biomarkers (ASCT+B) and the relationships between them. The ASCT+B tables are authored by human experts using templated Google Sheets. The biomarkers, cell types, and anatomical structures are mapped to existing ontologies (Uberon/FMA, CL, HGNC) whenever possible. All relationships between anatomical structures and from cell types to anatomical structures are valid Uberon and CL relationships. The Spatial Ontology defines the shape, size, location, and rotation of experimental tissue and data major anatomical structures in the 3D Reference Object Library. The Specimen Ontology captures the sex, age, and other information on donors that provided tissue data used in the construction of the HRA. | Mon Dec 19 14:41:10 GMT 2022 |
Search Terms Properties Individuals Download |
| Cell Cycle Ontology | CCO | The Cell Cycle Ontology extends existing ontologies for cell cycle knowledge building a resource that integrates and manages knowledge about the cell cycle components and regulatory aspects. | Wed Mar 23 13:43:08 GMT 2016 |
Search Terms Properties Individuals Download |
| Comparative Data Analysis Ontology | CDAO | The Comparative Data Analysis Ontology (CDAO) provides a framework for understanding data in the context of evolutionary-comparative analysis. This comparative approach is used commonly in bioinformatics and other areas of biology to draw inferences from a comparison of differently evolved versions of something, such as differently evolved versions of a protein. In this kind of analysis, the things-to-be-compared typically are classes called 'OTUs' (Operational Taxonomic Units). The OTUs can represent biological species, but also may be drawn from higher or lower in a biological hierarchy, anywhere from molecules to communities. The features to be compared among OTUs are rendered in an entity-attribute-value model sometimes referred to as the 'character-state data model'. For a given character, such as 'beak length', each OTU has a state, such as 'short' or 'long'. The differences between states are understood to emerge by a historical process of evolutionary transitions in state, represented by a model (or rules) of transitions along with a phylogenetic tree. CDAO provides the framework for representing OTUs, trees, transformations, and characters. The representation of characters and transformations may depend on imported ontologies for a specific type of character. | Fri Aug 14 20:05:38 BST 2020 |
Search Terms Properties Individuals Download |
| Compositional Dietary Nutrition Ontology | CDNO | None | Tue Jun 28 20:52:26 BST 2022 |
Search Terms Properties Individuals Download |
| Cephalopod Ontology | CEPH | An anatomical and developmental ontology for cephalopods | Fri Aug 14 20:41:31 BST 2020 |
Search Terms Properties Individuals Download |
| Chemical Entities of Biological Interest | CHEBI | A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds. | Thu Sep 01 03:13:43 BST 2022 |
Search Terms Properties Individuals Download |
| chemical information ontology (cheminf) - information entities about chemical entities | CHEMINF | Mon Mar 08 06:01:20 GMT 2021 |
Search Terms Properties Individuals Download |
|
| CHEBI Integrated Role Ontology | CHIRO | CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides links from these roles to useful other classes in other ontologies. This will allow direct connection between chemical structures (small molecules, drugs) and what they do. This could be formalized using 'capable of', in the same way Uberon and the Cell Ontology link structures to processes. | Fri Aug 14 22:38:15 BST 2020 |
Search Terms Properties Individuals Download |
| Chemical Methods Ontology | CHMO | CHMO, the chemical methods ontology, describes methods used to collect data in chemical experiments, such as mass spectrometry and electron microscopy prepare and separate material for further analysis, such as sample ionisation, chromatography, and electrophoresis synthesise materials, such as epitaxy and continuous vapour deposition It also describes the instruments used in these experiments, such as mass spectrometers and chromatography columns. It is intended to be complementary to the Ontology for Biomedical Investigations (OBI). | Fri Aug 26 02:13:34 BST 2022 |
Search Terms Properties Individuals Download |
| CIDO: Ontology of Coronavirus Infectious Disease | CIDO | The Ontology of Coronavirus Infectious Disease (CIDO) is a community-driven open-source biomedical ontology in the area of coronavirus infectious disease. The CIDO is developed to provide standardized human- and computer-interpretable annotation and representation of various coronavirus infectious diseases, including their etiology, transmission, pathogenesis, diagnosis, prevention, and treatment. | Tue Oct 18 13:15:39 BST 2022 |
Search Terms Properties Individuals Download |
| Confidence Information Ontology | CIO | An ontology to capture confidence information about annotations. | Sat Aug 15 00:27:36 BST 2020 |
Search Terms Properties Individuals Download |
| Cell Ontology | CL | An ontology of cell types. | Mon Dec 19 11:31:05 GMT 2022 |
Search Terms Properties Individuals Download |
| Collembola Anatomy Ontology | CLAO | CLAO is an ontology of anatomical terms employed in morphological descriptions for the Class Collembola (Arthropoda: Hexapoda). | Wed Sep 29 14:12:09 BST 2021 |
Search Terms Properties Individuals Download |
| CLO: Cell Line Ontology | CLO | The Cell Line Ontology (CLO) is a community-based ontology of cell lines. The CLO is developed to unify publicly available cell line entry data from multiple sources to a standardized logically defined format based on consensus design patterns. | Tue Mar 29 17:32:45 BST 2022 |
Search Terms Properties Individuals Download |
| Clytia hemisphaerica Development and Anatomy Ontology (CLYH) | CLYH | Anatomy, development and life cycle stages - planula, polyp, medusa/jellyfish - of the cnidarian hydrozoan species, Clytia hemiphaerica. | Sat Aug 15 02:20:04 BST 2020 |
Search Terms Properties Individuals Download |
| Clinical measurement ontology | CMO | Morphological and physiological measurement records generated from clinical and model organism research and health programs. | Sat Aug 15 02:54:28 BST 2020 |
Search Terms Properties Individuals Download |
| Cellular Microscopy Phenotype Ontology | CMPO | CMPO is a species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations. | Wed Aug 25 15:27:24 BST 2021 |
Search Terms Properties Individuals Download |
| Rice ontology | CO_320 | Rice Trait Dictionary in template v 5.0 - IRRI - March 2016 - Based on SES, RD, UPOV variables and on variables used by CIAT, FLAR and the GRISP Phenotyping Network variables | Thu Apr 16 22:55:54 BST 2020 |
Search Terms Properties Individuals Download |
| Wheat ontology | CO_321 | July 2018 | Thu May 20 02:05:13 BST 2021 |
Search Terms Properties Individuals Download |
| Wheat ontology | CO_321:ROOT | T3 Wheat traits |
Search Terms Properties Individuals Download |
|
| Maize ontology | CO_322 | Maize Trait Dictionary in template 5 - CIMMYT- September 2016 | Thu May 20 02:41:44 BST 2021 |
Search Terms Properties Individuals Download |
| Barley ontology | CO_323 | ICARDA - TDv5 - Sept 2018 | Fri Oct 08 12:39:33 BST 2021 |
Search Terms Properties Individuals Download |
| Sorghum ontology | CO_324 | Sorghum TDv5 - Oct 2019 | Thu Dec 03 03:27:29 GMT 2020 |
Search Terms Properties Individuals Download |
| Banana ontology | CO_325 | Banana Trait Dictionary in template 5 - Bioversity & IITA - April 2019 | Thu Dec 03 04:49:07 GMT 2020 |
Search Terms Properties Individuals Download |
| Coconut ontology | CO_326 | Draft version | Thu Oct 14 12:32:34 BST 2021 |
Search Terms Properties Individuals Download |
| Pearl millet ontology | CO_327 | Pearl millet Trait Dictionary in template 5 - ICRISAT/INERA - April 2016 | Mon Aug 22 12:24:15 BST 2022 |
Search Terms Properties Individuals Download |
| Potato ontology | CO_330 | CIP - potato ontology - december 2018 | Wed Jun 16 02:16:45 BST 2021 |
Search Terms Properties Individuals Download |
| Sweet Potato ontology | CO_331 | Sweet Potato Trait Dictionary in template v5 - CIP - November 2019 | Mon Aug 22 13:05:19 BST 2022 |
Search Terms Properties Individuals Download |
| Beet Ontology ontology | CO_333 | This ontology was built as part of the AKER project. It describes variables used in beet phenotyping (experimental properties and measurement scale) for each institution (INRAE, Geves, ITB) and breeding companies (Florimond Desprez). Curator: Dorothee Charruaud (ADRINORD - URGI) Daphne Verdelet (Florimond Desprez) - First submission in November 2017. | Mon Aug 22 13:46:55 BST 2022 |
Search Terms Properties Individuals Download |
| Cassava ontology | CO_334 | Cassava Trait Dictionary in template 5 - IITA - July 2015, updated in February 2016 | Thu May 20 03:57:11 BST 2021 |
Search Terms Properties Individuals Download |
| Common Bean ontology | CO_335 | CIAT Common bean trait dictionary - version August 2014 | Mon Aug 22 14:27:41 BST 2022 |
Search Terms Properties Individuals Download |
| Soybean ontology | CO_336 | Soybean Trait Dictionary in template v5 - IITA - July 2015 |
|
|
| Groundnut ontology | CO_337 | Groundnut Trait Dictionary in template v5 - ICRISAT/ISRA/DARS - Sept 2015 | Thu May 20 05:12:16 BST 2021 |
Search Terms Properties Individuals Download |
| Chickpea ontology | CO_338 | Chickpea Trait Dictionary in template v5 - ICRISAT - July 2015 | Fri Jun 04 08:08:05 BST 2021 |
Search Terms Properties Individuals Download |
| Lentil ontology | CO_339 | Lentil Trait Dictionary in template v5 - ICARDA - July 2015 | Fri Apr 17 18:22:17 BST 2020 |
Search Terms Properties Individuals Download |
| Cowpea ontology | CO_340 | Cowpea Trait Dictionary in template v5 - IITA - August 2015 | Fri Sep 17 00:20:16 BST 2021 |
Search Terms Properties Individuals Download |
| Pigeonpea ontology | CO_341 | Pigeonpea Trait Dictionary in template v5 - ICRISAT - July 2015 | Mon Aug 17 23:17:00 BST 2020 |
Search Terms Properties Individuals Download |
| Yam ontology | CO_343 | version 2019 - pvs | Thu May 20 06:27:54 BST 2021 |
Search Terms Properties Individuals Download |
| Brachiaria ontology | CO_345 | Brachiaria (forages) ontology TD v5 - Version Oct 2016 | Fri Jul 17 03:34:09 BST 2020 |
Search Terms Properties Individuals Download |
| Mungbean ontology | CO_346 | oct 2016 | Mon Apr 05 02:10:21 BST 2021 |
Search Terms Properties Individuals Download |
| Castor bean ontology | CO_347 | March 2017 version | Mon Aug 22 15:08:04 BST 2022 |
Search Terms Properties Individuals Download |
| Brassica ontology | CO_348 | Brassica Trait Ontology (BRaTO) hosts trait information to describe brassica crop data. Terms are collected from various projects including OREGIN, RIPR (UK) and Rapsodyn (France). BRATO development is conducted by Earlham Institute (UK), Southern Cross University (Australia) and INRA (France). | Fri Oct 08 13:11:54 BST 2021 |
Search Terms Properties Individuals Download |
| Oat ontology | CO_350 | Oat trait dictionary started by Oat Global (http://oatglobal.org/) and improved by NIAB and PepsiCo | Tue Aug 18 01:38:27 BST 2020 |
Search Terms Properties Individuals Download |
| Vitis ontology | CO_356 | Grape Ontology including OIV and bioversity descriptors. INRA July 2017 | Thu Jan 21 03:26:57 GMT 2021 |
Search Terms Properties Individuals Download |
| Woody Plant Ontology ontology | CO_357 | This ontology lists all variables used for woody plant observations. Terms are collected from various sources (past and ongoing projects at national and international levels). Curators: Celia Michotey (INRAE) & Ines Chaves (IBET) - Version 2 submitted on Jun 2020 by INRAE. | Mon Aug 22 15:49:17 BST 2022 |
Search Terms Properties Individuals Download |
| Cotton ontology | CO_358 | Cotton ontology from CottonGen database - June 2019 | Thu Feb 04 03:40:37 GMT 2021 |
Search Terms Properties Individuals Download |
| Sunflower ontology | CO_359 | December 2019 |
|
|
| Sugar Kelp trait ontology | CO_360 | Sugar Kelp trait ontology | Mon Aug 22 16:29:51 BST 2022 |
Search Terms Properties Individuals Download |
| Fababean ontology | CO_365 | developed by ICARDA - Dec 2018 | Thu Oct 14 13:49:32 BST 2021 |
Search Terms Properties Individuals Download |
| Bambara groundnut ontology | CO_366 | version Dec 2019 | Mon Aug 22 17:09:56 BST 2022 |
Search Terms Properties Individuals Download |
| Core Ontology for Biology and Biomedicine | COB | COB brings together key terms from a wide range of OBO projects to improve interoperability. | Wed May 04 20:17:29 BST 2022 |
Search Terms Properties Individuals Download |
| Coleoptera Anatomy Ontology | COLAO | The Coleoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of beetles in biodiversity research. | Wed Jun 29 05:36:33 BST 2022 |
Search Terms Properties Individuals Download |
| CoVoc Coronavirus Vocabulary | COVOC | The COVID-19 Vocabulary (COVoc) is an ontology containing terms related to the research of the COVID-19 pandemic. This includes host organisms, pathogenicity, gene and gene products, barrier gestures, treatments and more. | Wed Oct 21 04:03:47 BST 2020 |
Search Terms Properties Individuals Download |
| Critical Path Ontology | CPONT | An application ontology for integrating data from the Critical Path Institute's Rare Disease Cures Accelerator Data and Analytica Platform (RDCA-DAP). | Thu Nov 17 16:32:14 GMT 2022 |
Search Terms Properties Individuals Download |
| Contributor Role Ontology | CRO | A classification of the diverse roles performed in the work leading to a published research output in the sciences. Its purpose to provide transparency in contributions to scholarly published work, to enable improved systems of attribution, credit, and accountability. | Sat Aug 15 05:57:43 BST 2020 |
Search Terms Properties Individuals Download |
| Cryo Electron Microscopy ontology | CRYOEM | Ontology that describes data types and image processing operations in Cryo Electron Microscopy of Single Particles | Tue Mar 01 11:55:57 GMT 2022 |
Search Terms Properties Individuals Download |
| Ctenophore Ontology | CTENO | An anatomical and developmental ontology for ctenophores (Comb Jellies) | Sat Aug 15 06:34:14 BST 2020 |
Search Terms Properties Individuals Download |
| CTO: Core Ontology of Clinical Trials | CTO | The core Ontology of Clinical Trials (CTO) will serve as a structured resource integrating basic terms and concepts in the context of clinical trials. Thereby covering clinicaltrails.gov. CoreCTO will serve as a basic ontology to generate extended versions for specific applications such as annotation of variables in study documents from clinical trials. | Fri Jun 18 03:43:42 BST 2021 |
Search Terms Properties Individuals Download |
| Cardiovascular Disease Ontology | CVDO | An ontology to describe entities related to cardiovascular diseases | Sat Aug 15 07:51:20 BST 2020 |
Search Terms Properties Individuals Download |
| Dictyostelium discoideum anatomy | DDANAT | A structured controlled vocabulary of the anatomy of the slime-mold Dictyostelium discoideum | Sat Aug 15 08:29:43 BST 2020 |
Search Terms Properties Individuals Download |
| Dicty Phenotype Ontology (DDPHENO) | DDPHENO | A structured controlled vocabulary of phenotypes of the slime-mould Dictyostelium discoideum. | Sat Aug 15 09:05:35 BST 2020 |
Search Terms Properties Individuals Download |
| DICOM Controlled Terminology | DICOM | DICOM Controlled Terminology | Thu Nov 25 04:34:12 GMT 2021 |
Search Terms Properties Individuals Download |
| Drug-drug Interaction and Drug-drug Interaction Evidence Ontology | DIDEO | The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology | Fri Jun 17 00:13:34 BST 2022 |
Search Terms Properties Individuals Download |
| Disease Drivers | DISDRIV | Drivers of human diseases including environmental, maternal and social exposures. | Wed Feb 02 23:50:58 GMT 2022 |
Search Terms Properties Individuals Download |
| Human Disease Ontology | DOID | The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts. | Tue Oct 18 12:31:42 BST 2022 |
Search Terms Properties Individuals Download |
| Drosophila Phenotype Ontology (DPO) | FBcv | An ontology for the description of Drosophila melanogaster phenotypes. | Fri Aug 26 01:30:06 BST 2022 |
Search Terms Properties Individuals Download |
| The Drug Ontology | DRON | We built this ontology primarily to support comparative effectiveness researchers studying claims data. They need to be able to query U.S. National Drug Codes (NDCs) by ingredient, mechanism of action (beta-adrenergic blockade), physiological effect (diuresis), and therapeutic intent (anti-hypertensive). | Wed May 04 21:51:31 BST 2022 |
Search Terms Properties Individuals Download |
| duo | DUO | Thu May 26 18:10:00 BST 2022 |
Search Terms Properties Individuals Download |
|
| Echinoderm Anatomy and Development Ontology | ECAO | None | Sat Aug 15 14:19:27 BST 2020 |
Search Terms Properties Individuals Download |
| Evidence & Conclusion Ontology (ECO) | ECO | The Evidence & Conclusion Ontology (ECO) describes types of scientific evidence within the biological research domain that arise from laboratory experiments, computational methods, literature curation, or other means. | Tue Aug 09 22:08:38 BST 2022 |
Search Terms Properties Individuals Download |
| An ontology of core ecological entities | ECOCORE | Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms. | Thu Mar 10 10:33:11 GMT 2022 |
Search Terms Properties Individuals Download |
| Environment Exposure Ontology | ECTO | ECTO describes exposures to experimental treatments of plants and model organisms (e.g. exposures to modification of diet, lighting levels, temperature); exposures of humans or any other organisms to stressors through a variety of routes, for purposes of public health, environmental monitoring etc, stimuli, natural and experimental, any kind of environmental condition or change in condition that can be experienced by an organism or population of organisms on earth. The scope is very general and can include for example plant treatment regimens, as well as human clinical exposures (although these may better be handled by a more specialized ontology). | Mon Dec 19 15:18:48 GMT 2022 |
Search Terms Properties Individuals Download |
| Bioinformatics operations, data types, formats, identifiers and topics | EDAM | EDAM is a simple ontology of well established, familiar concepts that are prevalent within bioinformatics, including types of data and data identifiers, data formats, operations and topics. EDAM provides a set of terms with synonyms and definitions - organised into an intuitive hierarchy for convenient use. | Fri Nov 27 13:59:35 GMT 2020 |
Search Terms Properties Individuals Download |
| Experimental Factor Ontology | EFO | The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for external projects such as the NHGRI GWAS catalogue. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by many groups at the EBI and as the core ontology for OpenTargets.org | Mon Dec 19 10:14:02 GMT 2022 |
Search Terms Properties Individuals Download |
| Human developmental anatomy, abstract | EHDAA2 | A structured controlled vocabulary of stage-specific anatomical structures of the developing human. | Thu Aug 05 06:20:20 BST 2021 |
Search Terms Properties Individuals Download |
| Mouse Developmental Anatomy Ontology | EMAPA | An ontology for mouse anatomy covering embryonic development and postnatal stages. | Mon Jul 18 16:48:00 BST 2022 |
Search Terms Properties Individuals Download |
| eNanoMapper Ontology | ENM | The eNanoMapper project (www.enanomapper.net) is creating a pan-European computational infrastructure for toxicological data management for ENMs, based on semantic web standards and ontologies. > This ontology is an application ontology targeting the full domain of nanomaterial safety assessment. It re-uses several other ontologies including the NPO, CHEMINF, ChEBI, and ENVO. | Mon Jul 18 17:37:43 BST 2022 |
Search Terms Properties Individuals Download |
| Ensembl Glossary | ENSGLOSS | The Ensembl glossary lists the terms, data types and file types that are used in Ensembl and describes how they are used. | Mon Sep 26 17:23:39 BST 2022 |
Search Terms Properties Individuals Download |
| The Environment Ontology | ENVO | ENVO is an ontology which represents knowledge about environments,environmental processes, ecosystems, habitats, and related entities | Thu May 20 07:05:42 BST 2021 |
Search Terms Properties Individuals Download |
| Environment Ontology for Livestock | EOL | L'ontologie EOL décrit les conditions d'environnement des élevages d'animaux domestiques. Elle décrit plus particulièrement les modalités de l'alimentation, de l'environnement, de la structure des élevages et des systèmes d'élevage | Thu Sep 13 04:35:21 BST 2018 |
Search Terms Properties Individuals Download |
| Epilepsy Ontology (EPIO) | EPIO | The Epilepsy Ontology (EPIO) is an assembly of structured knowledge on various aspects of epilepsy, developed according to basic formal ontology (BFO) and Open Biological and Biomedical Ontology (OBO) Foundry principles. Entities and definitions are collected from the latest International League against Epilepsy (ILAE) classification, as well as from domain-specific ontologies such as Epilepsy Ontology (EPILONT), Epilepsy Syndrome Seizure Ontology (ESSO), Epilepsy Semiology(EPISEM) and Epilepsy and Seizure Ontology (EPSO) and scientific literature. This ontology is intended to be used for data management and for text mining purposes. The current release of the ontology is publicly available and is a community based effort to assemble various facets of the complex disease Epilepsy. | Tue Jan 04 21:34:46 GMT 2022 |
Search Terms Properties Individuals Download |
| Epilepsy Ontology | EPSO | A application driven Epilepsy Ontology sith official terms from the ILAE. |
Search Terms Properties Individuals Download |
|
| eagle-i resource ontology | ERO | An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens. | Thu Aug 05 07:34:55 BST 2021 |
Search Terms Properties Individuals Download |
| VEuPathDB Ontology | EUPATH | The VEuPathDB ontology is an application ontology developed to encode our understanding of what data is about in the public resources developed and maintained by the Eukaryotic Pathogen, Host and Vector Genomics Resource (VEuPathDB; https://veupathdb.org). The VEuPathDB ontology was previously named the EuPathDB ontology prior to EuPathDB joining with VectorBase.The ontology was built based on the Ontology of Biomedical Investigations (OBI) with integration of other OBO ontologies such as PATO, OGMS, DO, etc. as needed for coverage. Currently the VEuPath ontology is primarily intended to be used for support of the VEuPathDB sites. Terms with VEuPathDB ontology IDs that are not specific to VEuPathDB will be submitted to OBO Foundry ontologies for subsequent import and replacement of those terms when they are available. | Fri Jun 17 03:28:29 BST 2022 |
Search Terms Properties Individuals Download |
| Exposure ontology (ExO) | ExO | ExO is intended to bridge the gap between exposure science and diverse environmental health disciplines including toxicology, epidemiology, disease surveillance, and epigenetics. | Tue Jul 05 19:47:07 BST 2022 |
Search Terms Properties Individuals Download |
| Fungal gross anatomy | FAO | A structured controlled vocabulary for the anatomy of fungi. | Sat Aug 15 20:33:13 BST 2020 |
Search Terms Properties Individuals Download |
| Biological Imaging Methods Ontology | FBbi | A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research. | Mon Nov 09 04:02:00 GMT 2020 |
Search Terms Properties Individuals Download |
| Drosophila Anatomy Ontology (DAO) | FBbt | An ontology of Drosophila melanogaster anatomy. | Fri Jun 17 04:17:18 BST 2022 |
Search Terms Properties Individuals Download |
| FlyBase Controlled Vocabulary (FBcv) | FBcv | A miscellaneous ontology of terms used for curation in FlyBase, including the DPO. | Fri Jun 17 05:05:43 BST 2022 |
Search Terms Properties Individuals Download |
| FlyBase Developmental Ontology (FBdv) | FBdv | An ontology of Drosophila melanogaster developmental stages. | Fri Jun 17 05:53:36 BST 2022 |
Search Terms Properties Individuals Download |
| Food Interactions with Drugs Evidence Ontology | FIDEO | The Food Interactions with Drugs Evidence Ontology (FIDEO) represents Food-Drug Interactions and underlying interaction mechanisms described in scientific publications, drug and adverse effects databases, and drug interactions compendia. The ontology builds on previous efforts from the FoodOn, DRON, ChEBI, and DIDEO ontologies as well as the Thériaque database. This ontology is maintained at https://gitub.u-bordeaux.fr/erias/fideo, and requests for changes or additions should be filed at the issue tracker there. | Thu Nov 11 00:03:03 GMT 2021 |
Search Terms Properties Individuals Download |
| Physico-chemical methods and properties | FIX | An ontology of physico-chemical methods and properties. | Thu Aug 05 09:25:41 BST 2021 |
Search Terms Properties Individuals Download |
| Flora Phenotype Ontology | FLOPO | Traits and phenotypes of flowering plants occurring in digitized Floras | Wed Sep 01 12:23:53 BST 2021 |
Search Terms Properties Individuals Download |
| Foundational Model of Anatomy Ontology (subset) | FMA | This is currently a slimmed down version of FMA | Sun Aug 16 00:46:10 BST 2020 |
Search Terms Properties Individuals Download |
| Food-Biomarker Ontology | FOBI | FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data | Wed May 04 23:14:14 BST 2022 |
Search Terms Properties Individuals Download |
| Food Ontology | FOODON | FoodOn (http://foodon.org) is a consortium-driven project to build a comprehensive and easily accessible global farm-to-fork ontology about food, that accurately and consistently describes foods commonly known in cultures from around the world. | Wed Feb 02 14:02:03 GMT 2022 |
Search Terms Properties Individuals Download |
| FuTRES Ontology of Vertebrate Traits | FOVT | None | Thu Nov 11 00:39:36 GMT 2021 |
Search Terms Properties Individuals Download |
| Fission Yeast Phenotype Ontology (FYPO) | FYPO | A formal ontology of phenotypes observed in fission yeast. | Mon Jul 18 18:24:54 BST 2022 |
Search Terms Properties Individuals Download |
| gaz | GAZ | Thu May 26 17:28:01 BST 2022 |
Search Terms Properties Individuals Download |
|
| Genomics Cohorts Knowledge Ontology | GECKO | An ontology to represent genomics cohort attributes. | Thu Jan 21 04:52:50 GMT 2021 |
Search Terms Properties Individuals Download |
| Genomic Epidemiology Ontology | GENEPIO | The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks. | Tue Feb 15 19:26:38 GMT 2022 |
Search Terms Properties Individuals Download |
| GENO ontology | GENO | GENO is an OWL model of genotypes, their more fundamental sequence components, and links to related biological and experimental entities. At present many parts of the model are exploratory and set to undergo refactoring. In addition, many classes and properties have GENO URIs but are place holders for classes that will be imported from an external ontology (e.g. SO, ChEBI, OBI, etc). Furthermore, ongoing work will implement a model of genotype-to-phenotype associations. This will support description of asserted and inferred relationships between a genotypes, phenotypes, and environments, and the evidence/provenance behind these associations. Documentation is under development as well, and for now a slidedeck is available at http://www.slideshare.net/mhb120/brush-icbo-2013 | Tue Apr 19 23:31:20 BST 2022 |
Search Terms Properties Individuals Download |
| Geographical Entity Ontology | GEO | An ontology of geographical entities | Sun Aug 16 06:09:45 BST 2020 |
Search Terms Properties Individuals Download |
| Gene Expression Ontology | GeXO | Gene Expression Ontology | Mon Apr 20 17:22:45 BST 2020 |
Search Terms Properties Individuals Download |
| Glycan Naming Ontology | GNO | An ontology for glycans based on GlyTouCan, but organized by subsumption. | Thu Feb 24 08:16:05 GMT 2022 |
Search Terms Properties Individuals Download |
| Gene Ontology | GO | The Gene Ontology (GO) provides a framework and set of concepts for describing the functions of gene products from all organisms. | Wed Jan 04 14:20:47 GMT 2023 |
Search Terms Properties Individuals Download |
| GSSO - the Gender, Sex, and Sexual Orientation ontology | GSSO | GSSO is the Gender, Sex, and Sex Orientation ontology, including terms related to gender identity and expression, sexual and romantic identity and orientation, and sexual and reproductive behavior. | Mon Jul 11 22:53:57 BST 2022 |
Search Terms Properties Individuals Download |
| Human Ancestry Ontology | HANCESTRO | Human ancestry ontology for the NHGRI GWAS Catalog | Wed Jun 15 13:17:44 BST 2022 |
Search Terms Properties Individuals Download |
| Hymenoptera Anatomy Ontology | HAO | A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants) | Wed Sep 01 12:24:52 BST 2021 |
Search Terms Properties Individuals Download |
| Human Cell Atlas Ontology | HCAO | Application ontology for human cell types, anatomy and development stages for the Human Cell Atlas. | Mon Dec 19 10:52:21 GMT 2022 |
Search Terms Properties Individuals Download |
| Homology Ontology | HOM | This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology. | Thu Oct 07 19:21:58 BST 2021 |
Search Terms Properties Individuals Download |
| Human Phenotype Ontology | HP | The Human Phenotype Ontology (HPO) provides a standardized vocabulary of phenotypic abnormalities and clinical features encountered in human disease. | Fri Jun 17 07:35:15 BST 2022 |
Search Terms Properties Individuals Download |
| Histopathology Ontology | MC | An ontology of histopathological morphologies used by pathologists to classify/categorise animal lesions observed histologically during regulatory toxicology studies. The ontology was developed using real data from over 6000 regulatory toxicology studies donated by 13 companies spanning nine species. | Sun Aug 16 10:36:58 BST 2020 |
Search Terms Properties Individuals Download |
| Human Developmental Stages | HsapDv | Life cycle stages for Human | Sun Aug 16 11:09:21 BST 2020 |
Search Terms Properties Individuals Download |
| Health Surveillance Ontology | HSO | The health Surveillance Ontology (HSO) focuses on "surveillance system level data", that is, data outputs from surveillance activities, such as number of samples collected, cases observed, etc. It aims to support One-Health surveillance, covering animal health, public health and food safety surveillance. | Tue Dec 14 06:13:31 GMT 2021 |
Search Terms Properties Individuals Download |
| Hypertension Ontology For Clinical Data | HTN | An ontology for representing clinical data about hypertension, intended to support classification of patients according to various diagnostic guidelines | Tue Apr 21 06:13:38 BST 2020 |
Search Terms Properties Individuals Download |
| Information Artifact Ontology (IAO) | IAO | The Information Artifact Ontology (IAO) is an ontology of information entities, originally driven by work by the OBI digital entity and realizable information entity branch. | Fri Dec 11 10:40:36 GMT 2020 |
Search Terms Properties Individuals Download |
| ICEO: Ontology of Integrative and Conjugative Elements | ICEO | A biological ontology to standardize and integrate Integrative and Conjugative Element (ICE) information and to support computer-assisted reasoning. | Thu Oct 07 19:57:51 BST 2021 |
Search Terms Properties Individuals Download |
| Informed Consent Ontology (ICO) | ICO | The Informed Consent Ontology (ICO) is an ontology for the informed consent and informed consent process in the medical field. | Fri Apr 02 02:25:18 BST 2021 |
Search Terms Properties Individuals Download |
| Infectious Disease Ontology | IDO | A set of interoperable ontologies that will together provide coverage of the infectious disease domain. IDO core is the upper-level ontology that hosts terms of general relevance across the domain, while extension ontologies host terms to specific to a particular part of the domain. | Sun Aug 16 13:23:07 BST 2020 |
Search Terms Properties Individuals Download |
| The COVID-19 Infectious Disease Ontology | IDO-COVID-19 | The COVID-19 Infectious Disease Ontology (IDO-COVID-19) is an extension of the Infectious Disease Ontology (IDO) and the Virus Infectious Disease Ontology (VIDO). IDO-COVID-19 follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used to represent infection by the SARS-CoV-2 virus strain, and the associated COVID-19 disease. | Fri Sep 25 01:22:44 BST 2020 |
Search Terms Properties Individuals Download |
| Malaria Ontology | IDOMAL | An application ontology to cover all aspects of malaria as well as the intervention attempts to control it. | Sun Aug 16 13:57:09 BST 2020 |
Search Terms Properties Individuals Download |
| INO: Interaction Network Ontology | INO | he Interaction Network Ontology (INO) is an ontology in the domain of interactions and interaction networks. INO represents general and species-neutral types of interactions and interaction networks, and their related elements and relations. INO is a community-driven ontology, aligns with BFO, and is developed by following the OBO Foundry principles. | Wed Aug 31 18:36:21 BST 2022 |
Search Terms Properties Individuals Download |
| Kinetic Simulation Algorithm Ontology | KISAO | A classification of algorithms for simulating biology, their parameters, and their outputs | Tue Oct 12 18:15:38 BST 2021 |
Search Terms Properties Individuals Download |
| clinical LABoratory Ontology | LABO | LABO is an ontology of informational entities formalizing clinical laboratory tests prescriptions and reporting documents. | Fri Oct 29 15:36:41 BST 2021 |
Search Terms Properties Individuals Download |
| Livestock Breed Ontology | LBO | A vocabulary for cattle, chicken, horse, pig, and sheep breeds. | Wed Jun 29 08:16:17 BST 2022 |
Search Terms Properties Individuals Download |
| Lepidoptera Anatomy Ontology | LEPAO | The Lepidoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of moths and butterflies in biodiversity research. | Thu Dec 16 15:03:17 GMT 2021 |
Search Terms Properties Individuals Download |
| Mouse adult gross anatomy | MA | A structured controlled vocabulary of the adult anatomy of the mouse (Mus). | Wed Aug 25 19:26:24 BST 2021 |
Search Terms Properties Individuals Download |
| Mathematical Modelling Ontology | MAMO | Tue Nov 02 00:07:43 GMT 2021 |
Search Terms Properties Individuals Download |
|
| Medical Action Ontology | MAXO | An ontology to represent medically relevant actions, procedures, therapies, interventions, and recommendations. | Mon Dec 19 13:29:51 GMT 2022 |
Search Terms Properties Individuals Download |
| Microbial Conditions Ontology | MCO | Microbial Conditions Ontology is an ontology... | Sun Aug 16 17:15:35 BST 2020 |
Search Terms Properties Individuals Download |
| Mental Functioning Ontology | MF | Thu Nov 18 06:20:18 GMT 2021 |
Search Terms Properties Individuals Download |
|
| Mammalian Feeding Muscle Ontology | MFMO | The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors. | Wed Apr 22 00:27:03 BST 2020 |
Search Terms Properties Individuals Download |
| Emotion Ontology | MFOEM | Mon Mar 21 09:35:30 GMT 2022 |
Search Terms Properties Individuals Download |
|
| Mental Disease Ontology | MFOMD | The Mental Disease Ontology is developed to facilitate representation for all aspects of mental disease. It is an extension of the Ontology for General Medical Science (OGMS) and Mental Functioning Ontology (MF). | Sun Aug 16 18:52:15 BST 2020 |
Search Terms Properties Individuals Download |
| mi | MI | Thu Sep 01 00:07:22 BST 2022 |
Search Terms Properties Individuals Download |
|
| Minimum Information for A Phylogenetic Analysis (MIAPA) Ontology | MIAPA | The MIAPA ontology is intended to be an application ontology for the purpose of semantic annotation of phylogenetic data according to the requirements and recommendations of the Minimum Information for A Phylogenetic Analysis (MIAPA) metadata reporting standard. The ontology leverages (imports) primarily from the CDAO (Comparative Data Analysis Ontology), PROV (W3C Provenance Ontology), and SWO (Software Ontology, which includes the EDAM ontologies) ontologies. It adds some assertions of its own, as well as some classes and individuals that may eventually get pushed down into one of the respective source ontologies. This ontology is maintained at http://github.com/miapa/miapa, and requests for changes or additions should be filed at the issue tracker there. The discussion list is at miapa-discuss@googlegroups.com. Further resources about MIAPA can be found at the project's main page at http://evoio.org/wiki/MIAPA. | Sun Aug 16 19:56:32 BST 2020 |
Search Terms Properties Individuals Download |
| Ontology of Prokaryotic Phenotypic and Metabolic Characters | MICRO | An ontology of prokaryotic phenotypic and metabolic characters | Wed Aug 25 20:06:40 BST 2021 |
Search Terms Properties Individuals Download |
| Mosquito insecticide resistance | MIRO | Application ontology for entities related to insecticide resistance in mosquitos | Sun Aug 16 20:30:17 BST 2020 |
Search Terms Properties Individuals Download |
| Measurement method ontology | MMO | A representation of the variety of methods used to make clinical and phenotype measurements. | Sun Aug 16 21:03:46 BST 2020 |
Search Terms Properties Individuals Download |
| Mouse Developmental Stages | MmusDv | Life cycle stages for Mus Musculus | Sun Aug 16 21:35:07 BST 2020 |
Search Terms Properties Individuals Download |
| Protein modification | MOD | PSI-MOD is an ontology consisting of terms that describe protein chemical modifications | Wed Jul 06 17:02:51 BST 2022 |
Search Terms Properties Individuals Download |
| Mondo Disease Ontology | MONDO | A semi-automatically constructed ontology that merges in multiple disease resources to yield a coherent merged ontology. | Mon Dec 19 14:07:24 GMT 2022 |
Search Terms Properties Individuals Download |
| MOP | MOP | MOP is the molecular process ontology. It contains the molecular processes that underlie the name reaction ontology RXNO, for example cyclization, methylation and demethylation. | Mon Feb 21 22:17:21 GMT 2022 |
Search Terms Properties Individuals Download |
| The Mammalian Phenotype Ontology | MP | The Mammalian Phenotype Ontology is being developed by Cynthia L. Smith, Susan M. Bello, Anna, Anagnostopoulos, Carroll W. Goldsmith and Janan T. Eppig, as part of the Mouse Genome Database (MGD) Project, Mouse Genome Informatics (MGI), The Jackson Laboratory, Bar Harbor, ME. This file contains pre-coordinated phenotype terms, definitions and synonyms that can be used to describe mammalian phenotypes. The ontology is represented as a directed acyclic graph (DAG). It organizes phenotype terms into major biological system headers such as nervous system and respiratory system. This ontology is currently under development. Weekly updates are available at the Mouse Genome Informatics (MGI) ftp site (ftp://ftp.informatics.jax.org/pub/reports/index.html#pheno) as well as the OBO Foundry site (http://obofoundry.org/). Questions, comments and suggestions are welcome, and should be directed to pheno@jax.org, Susan.Bello@jax.org or to GitHub tracker (https://github.com/mgijax/mammalian-phenotype-ontology/issues) MGD is funded by NIH/NHGRI grant HG000330. | Wed Aug 31 23:26:48 BST 2022 |
Search Terms Properties Individuals Download |
| Mouse pathology ontology | MPATH | A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes | Mon Aug 17 00:23:16 BST 2020 |
Search Terms Properties Individuals Download |
| Minimum PDDI Information Ontology | MPIO | An ontology of minimum information regarding potential drug-drug interaction information. | Mon Aug 17 00:54:56 BST 2020 |
Search Terms Properties Individuals Download |
| MHC Restriction Ontology | MRO | The MHC Restriction Ontology is an application ontology capturing how Major Histocompatibility Complex (MHC) restriction is defined in experiments, spanning exact protein complexes, individual protein chains, serotypes, haplotypes and mutant molecules, as well as evidence for MHC restrictions. | Wed Jun 29 10:58:52 BST 2022 |
Search Terms Properties Individuals Download |
| Mass spectrometry ontology | MS | A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry. | Mon Sep 26 15:53:14 BST 2022 |
Search Terms Properties Individuals Download |
| Metabolomics Standards Initiative Ontology (MSIO) | MSIO | an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies. | Wed Sep 01 12:25:31 BST 2021 |
Search Terms Properties Individuals Download |
| Neuro Behavior Ontology | NBO | An ontology of human and animal behaviours and behavioural phenotypes | Wed Feb 24 15:52:40 GMT 2021 |
Search Terms Properties Individuals Download |
| ncbitaxon | NCBITAXON | Tue Aug 30 13:35:40 BST 2022 |
Search Terms Properties Individuals Download |
|
| NCI Thesaurus OBO Edition | NCIT | NCI Thesaurus (NCIt)is a reference terminology that includes broad coverage of the cancer domain, including cancer related diseases, findings and abnormalities. The NCIt OBO Edition aims to increase integration of the NCIt with OBO Library ontologies. NCIt OBO Edition releases should be considered experimental. | Fri Sep 16 16:32:08 BST 2022 |
Search Terms Properties Individuals Download |
| Non-Coding RNA Ontology | NCRO | An ontology for non-coding RNA, both of biological origin, and engineered. | Mon Aug 17 05:49:50 BST 2020 |
Search Terms Properties Individuals Download |
| nuclear magnetic resonance CV | NMR | This artefact is an MSI-approved controlled vocabulary primarily developed under COSMOS EU and PhenoMeNal EU governance. The nmrCV is supporting the nmrML XML format with standardized terms. nmrML is a vendor agnostic open access NMR raw data standard. Its primaly role is analogous to the mzCV for the PSI-approved mzML XML format. It uses BFO2.0 as its Top level. This CV was derived from two predecessors (The NMR CV from the David Wishart Group, developed by Joseph Cruz) and the MSI nmr CV developed by Daniel Schober at the EBI. This simple taxonomy of terms (no DL semantics used) serves the nuclear magnetic resonance markup language (nmrML) with meaningful descriptors to amend the nmrML xml file with CV terms. Metabolomics scientists are encouraged to use this CV to annotrate their raw and experimental context data, i.e. within nmrML. The approach to have an exchange syntax mixed of an xsd and CV stems from the PSI mzML effort. The reason to branch out from an xsd into a CV is, that in areas where the terminology is likely to change faster than the nmrML xsd could be updated and aligned, an externally and decentrallised maintained CV can accompensate for such dynamics in a more flexible way. A second reason for this set-up is that semantic validity of CV terms used in an nmrML XML instance (allowed CV terms, position/relation to each other, cardinality) can be validated by rule-based proprietary validators: By means of cardinality specifications and XPath expressions defined in an XML mapping file (an instances of the CvMappingRules.xsd ), one can define what ontology terms are allowed in a specific location of the data model. | Thu Oct 01 03:38:03 BST 2020 |
Search Terms Properties Individuals Download |
| NOMEN - A nomenclatural ontology for biological names | NOMEN | NOMEN is a nomenclatural ontology for biological names (not concepts). It encodes the goverened rules of nomenclature. | Tue Jul 12 01:39:15 BST 2022 |
Search Terms Properties Individuals Download |
| OAE: Ontology of Adverse Events | OAE | The Ontology of Adverse Eventsy (OAE) is a biomedical ontology in the domain of adverse events. OAE aims to standardize adverse event annotation, integrate various adverse event data, and support computer-assisted reasoning. OAE is a community-based ontology. Its development follows the OBO Foundry principles. Vaccine adverse events have been used as an initial testing use case. OAE also studies adverse events associated with the administration of drug and nutritional products, the operation of surgeries, and the usage of medical devices, etc. | Wed Sep 01 12:26:35 BST 2021 |
Search Terms Properties Individuals Download |
| Ontology of Arthropod Circulatory Systems | OARCS | OArCS is an ontology describing the Arthropod ciruclatory system. | Mon Aug 17 07:35:14 BST 2020 |
Search Terms Properties Individuals Download |
| Ontology of Biological Attributes (OBA) | OBA | A collection of biological attributes (traits) covering all kingdoms of life. Interoperable with VT (vertebrate trait ontology) and TO (plant trait ontology). Extends PATO. | Mon Dec 19 12:53:02 GMT 2022 |
Search Terms Properties Individuals Download |
| Ontology of Biological and Clinical Statistics | OBCS | OBCS stands for the Ontology of Biological and Clinical Statistics. OBCS is an ontology in the domain of biological and clinical statistics. It is aligned with the Basic Formal Ontology (BFO) and the Ontology for Biomedical Investigations (OBI). OBCS imports all possible biostatistics terms in OBI and includes many additional biostatistics terms, some of which were proposed and discussed in the OBI face-to-face workshop in Ann Arbor in 2012. | Mon Aug 17 08:47:37 BST 2020 |
Search Terms Properties Individuals Download |
| Ontology for Biomedical Investigations | OBI | The Ontology for Biomedical Investigations (OBI) is build in a collaborative, international effort and will serve as a resource for annotating biomedical investigations, including the study design, protocols and instrumentation used, the data generated and the types of analysis performed on the data. This ontology arose from the Functional Genomics Investigation Ontology (FuGO) and will contain both terms that are common to all biomedical investigations, including functional genomics investigations and those that are more domain specific. | Tue Oct 18 14:00:01 BST 2022 |
Search Terms Properties Individuals Download |
| Ontology for BIoBanking (OBIB) | OBIB | The Ontology for Biobanking (OBIB) is an ontology for the annotation and modeling of the activities, contents, and administration of a biobank. Biobanks are facilities that store specimens, such as bodily fluids and tissues, typically along with specimen annotation and clinical data. OBIB is based on a subset of the Ontology for Biomedical Investigation (OBI), has the Basic Formal Ontology (BFO) as its upper ontology, and is developed following OBO Foundry principles. The first version of OBIB resulted from the merging of two existing biobank-related ontologies, OMIABIS and biobank ontology. | Tue Nov 23 04:59:05 GMT 2021 |
Search Terms Properties Individuals Download |
| OGG: Ontology of Genes and Genomes | OGG | OGG is a biological ontology in the area of genes and genomes. OGG uses the Basic Formal Ontology (BFO) as its upper level ontology. This OGG document contains the genes and genomes of a list of selected organisms, including human, two viruses (HIV and influenza virus), and bacteria (B. melitensis strain 16M, E. coli strain K-12 substrain MG1655, M. tuberculosis strain H37Rv, and P. aeruginosa strain PAO1). More OGG information for other organisms (e.g., mouse, zebrafish, fruit fly, yeast, etc.) may be found in other OGG subsets. | Tue Dec 15 13:28:18 GMT 2020 |
Search Terms Properties Individuals Download |
| Ontology for genetic interval | OGI | OGI formalized the genomic element by defining an upper class 'genetic interval'. The definition of 'genetic interval' is "the spatial continuous physical entity which contains ordered genomic sets(DNA, RNA, Allele, Marker,etc.) between and including two points (Nucleic Acid Base Residue) on a chromosome or RNA molecule which must have a liner primary sequence sturcture." Related paper: 1. Yu Lin, Norihiro Sakamoto (2009) “Genome, Gene, Interval and Ontology” Interdisciplinary Ontology Vol.2 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2009. Page(s):25-34 (http://cdb-riken.academia.edu/LinYu/Papers/142399/Genome_Gene_Interval_and_Ontology) Yu Lin, Hiroshi Tarui, Peter Simons (2009) “From Ontology for Genetic Interval(OGI) to Sequence Assembly – Ontology apply to next generation sequencing” Proceeding of the Semantic Web Applications and Tools for Life Science Workshop, Amsterdam, Nov.20th, 2009. (http://ceur-ws.org/Vol-559/Poster2.pdf) Yu Lin, Peter Simons (2010) “DNA sequence from below: A Nominalist Approach” Interdisciplinary Ontology Vol.3 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2010. (http://philpapers.org/rec/LINDSF) | Wed Mar 23 17:37:20 GMT 2016 |
Search Terms Properties Individuals Download |
| Ontology for General Medical Science | OGMS | The Ontology for General Medical Science (OGMS) is an ontology of entities involved in a clinical encounter. OGMS includes very general terms that are used across medical disciplines, including: 'disease', 'disorder', 'disease course', 'diagnosis', 'patient', and 'healthcare provider'. OGMS uses the Basic Formal Ontology (BFO) as an upper-level ontology. The scope of OGMS is restricted to humans, but many terms can be applied to a variety of organisms. OGMS provides a formal theory of disease that can be further elaborated by specific disease ontologies. This theory is implemented using OWL-DL and OBO Relation Ontology relations and is available in OWL and OBO formats. OGMS is based on the papers Toward an Ontological Treatment of Disease and Diagnosis and On Carcinomas and Other Pathological Entities. The ontology attempts to address some of the issues raised at the Workshop on Ontology of Diseases (Dallas, TX) and the Signs, Symptoms, and Findings Workshop(Milan, Italy). OGMS was formerly called the clinical phenotype ontology. Terms from OGMS hang from the Basic Formal Ontology. | Fri Oct 29 16:54:17 BST 2021 |
Search Terms Properties Individuals Download |
| Ontology of Genetic Susceptibility Factor | OGSF | An application ontology to represent genetic susceptibility to a specific disease, adverse event, or a pathological process. | Mon Aug 17 11:39:51 BST 2020 |
Search Terms Properties Individuals Download |
| Oral Health and Disease Ontology | OHD | The Oral Health and Disease Ontology is used for representing the diagnosis and treatment of dental maladies. | Mon Feb 14 04:52:21 GMT 2022 |
Search Terms Properties Individuals Download |
| OHMI: Ontology of Host-Microbiome Interactions | OHMI | OHMI is a biomedical ontology that represents the entities and relations in the domain of host-microbiome interactions. | Mon Aug 17 12:13:53 BST 2020 |
Search Terms Properties Individuals Download |
| OHPI: Ontology of Host-Pathogen Interactions | OHPI | OHPI is a biomedical ontology in the area of host-pathogen interactions. OHPI is developed by following the OBO Foundry Principles (e.g., openness and collaboration). | Wed Jan 08 08:44:30 GMT 2020 |
Search Terms Properties Individuals Download |
| Medaka Developmental Stages | OlatDv | Life cycle stages for Medaka | Sat Apr 11 11:17:01 BST 2020 |
Search Terms Properties Individuals Download |
| Ontology of units of Measure (OM) | OM | The OM ontology provides classes, instances, and properties that represent the different concepts used for defining and using measures and units. It includes, for instance, common units such as the SI units meter and kilogram, but also units from other systems of units such as the mile or nautical mile. For many application areas it includes more specific units and quantities, such as the unit of the Hubble constant: km/s/Mpc, or the quantity vaselife. OM defines the complete set of concepts in the domain as distinguished in the textual standards. As a result the ontology can answer a wider range of competency questions than the existing approaches do. The following application areas are supported by OM: Geometry; Mechanics; Thermodynamics; Electromagnetism; Fluid mechanics; Chemical physics; Photometry; Radiometry and Radiobiology; Nuclear physics; Astronomy and Astrophysics; Cosmology; Earth science; Meteorology; Material science; Microbiology; Economics; Information technology; Typography; Shipping; Food engineering; Post-harvest; technology; Dynamics of texture and taste; Packaging | Wed Aug 31 20:02:12 BST 2022 |
Search Terms Properties Individuals Download |
| Ontologized MIABIS | OMIABIS | An ontological version of MIABIS (Minimum Information About BIobank data Sharing) | Mon May 23 07:23:55 BST 2016 |
Search Terms Properties Individuals Download |
| Ontology for MIRNA Target | OMIT | Ontology to establish data exchange standards and common data elements in the microRNA (miR) domain | Fri Jun 07 00:55:21 BST 2019 |
Search Terms Properties Individuals Download |
| OBO Metadata Ontology | OMO | An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO). | Thu May 05 03:58:58 BST 2022 |
Search Terms Properties Individuals Download |
| Ontology of Microbial Phenotypes | OMP | An ontology of phenotypes covering microbes | Thu Sep 01 00:46:55 BST 2022 |
Search Terms Properties Individuals Download |
| Ontology of Medically Related Social Entities | OMRSE | This ontology covers the domain of social entities that are related to health care, such as demographic information and the roles of various individuals and organizations. | Wed Apr 20 05:04:29 BST 2022 |
Search Terms Properties Individuals Download |
| Ontology for Nutritional Epidemiology | ONE | An ontology to standardize research output of nutritional epidemiologic studies. | Fri Mar 26 03:46:56 GMT 2021 |
Search Terms Properties Individuals Download |
| Ontology for Nutritional Studies | ONS | The Ontology for Nutritional Studies (ONS) has been developed as part of the ENPADASI European project (http://www.enpadasi.eu/) with the aim to define a common language and building ontologies for nutritional studies. | Fri Jun 17 17:32:50 BST 2022 |
Search Terms Properties Individuals Download |
| OntoAvida: ontology for Avida digital evolution platform. | ONTOAVIDA | The Ontology for Avida (OntoAvida) project aims to develop an integrated vocabulary for the description of the most widely used computational approach for performing experimental evolution using digital organisms (i.e., self-replicating computer programs that evolve within a user-defined computational environment). The lack of a clearly defined vocabulary makes biologists feel reluctant to embrace the field of digital evolution. This unique ontology has the potential to change this picture overnight. OntoAvida was initially developed by https://fortunalab.org, the computational biology lab at the Doñana Biological Station (a research institute of the Spanish National Research Council based at Seville, Spain). Contributors to OntoAvida are expected to include members of the Digital Evolution Laboratory (https://devolab.org/) at Michigan State University (USA). More information can be found at https://obofoundry.org/ontology/ontoavida.html | Mon Mar 21 11:58:54 GMT 2022 |
Search Terms Properties Individuals Download |
| Obstetric and Neonatal Ontology | ONTONEO | The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby. | Fri Oct 29 18:01:58 BST 2021 |
Search Terms Properties Individuals Download |
| Ontology of Organizational Structures of Trauma centers and Trauma Systems | OOSTT | An ontology built for representating the organizational components of trauma centers and trauma systems. | Thu Jan 14 00:27:25 GMT 2021 |
Search Terms Properties Individuals Download |
| Ontology for Parasite Lifecycle | OPL | The Ontology for Parasite Lifecycle (OPL) models the life cycle stage details of various parasites, including Trypanosoma sp., Leishmania major, and Plasmodium sp., etc. In addition to life cycle stages, the ontology also models necessary contextual details, such as host information, vector information, and anatomical location. OPL is based on the Basic Formal Ontology (BFO) and follows the rules set by the OBO Foundry consortium. | Mon Feb 14 06:41:18 GMT 2022 |
Search Terms Properties Individuals Download |
| OPMI: Ontology of Precision Medicine and Investigation | OPMI | OPMI is a biomedical ontology in the area of precision medicine and its related investigations. It is community-driven and developed by following the OBO Foundry ontology development principles. | Fri Jun 17 18:26:58 BST 2022 |
Search Terms Properties Individuals Download |
| Orphanet Rare Disease Ontology | ORDO | The Orphanet Rare Disease ontology (ORDO) is jointly developed by Orphanet and the EBI to provide a structured vocabulary for rare diseases capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases. It derived from the Orphanet database (www.orpha.net ) , a multilingual database dedicated to rare diseases populated from literature and validated by international experts. It integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA),databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) or classifications (ICD10). | Wed Jun 29 11:51:08 BST 2022 |
Search Terms Properties Individuals Download |
| Ontology for RNA sequencing (ORNASEQ) | ORNASEQ | An application ontology designed to annotate next-generation sequencing experiments performed on RNA. | Fri Aug 16 21:02:11 BST 2019 |
Search Terms Properties Individuals Download |
| Orthology Ontology | ORTH | The need of a common ontology for describing orthology information in biological research communities has led to the creation of the Orthology Ontology (ORTH). ORTH ontology is designed to describe sequence homology data available in multiple orthology databases on the Web (e.g.: OMA, OrthoDB, HieranoiDB, and etc.). By sequence homology data, we mostly mean gene region, gene and protein centric orthology, paralogy, and xenology information. Depending on the database, the homology information is structured in different ways. ORTH ontology accommodates these disparate data structures namely Hierarchical Orthologous Group (HOG), cluster of homologous sequences and homologous-pairwise relations between sequences. In addition to the specific ORTH terms, this specification includes terms of the imported ontologies (e.g. Semanticscience Integrated Ontology, SIO) which are pertinents to represent the information from various orthology databases in a homogeneous way. | Mon Mar 21 13:30:04 GMT 2022 |
Search Terms Properties Individuals Download |
| OVAE: Ontology of Vaccine Adverse Events | OVAE | OVAE is a biomedical ontology in the area of vaccine adverse events. OVAE is an extension of the community-based Ontology of Adverse Events (OAE). | Mon Apr 25 02:43:14 BST 2016 |
Search Terms Properties Individuals Download |
| PATO - the Phenotype And Trait Ontology | PATO | An ontology of phenotypic qualities (properties, attributes or characteristics). | Thu Sep 01 01:26:54 BST 2022 |
Search Terms Properties Individuals Download |
| Provisional Cell Ontology | PCL | Cell types that are provisionally defined by experimental techniques such as single cell transcriptomics rather than a straightforward & coherent set of properties. | Thu Nov 17 18:05:37 GMT 2022 |
Search Terms Properties Individuals |
| Population and Community Ontology | PCO | The Population and Community Ontology (PCO) describes material entities, qualities, and processes related to collections of interacting organisms such as populations and communities. It is taxon neutral, and can be used for any species, including humans. The classes in the PCO are useful for describing evolutionary processes, organismal interactions, and ecological experiments. Practical applications of the PCO include community health care, plant pathology, behavioral studies, sociology, and ecology. | Tue May 04 08:49:32 BST 2021 |
Search Terms Properties Individuals Download |
| The Prescription of Drugs Ontology | PDRO | An ontology to describe entities related to prescription of drugs | Thu Aug 05 13:16:33 BST 2021 |
Search Terms Properties Individuals Download |
| Platynereis Developmental Stages | PdumDv | Life cycle stages for Platynereis dumerilii | Sat Apr 11 15:56:26 BST 2020 |
Search Terms Properties Individuals Download |
| Plant Experimental Conditions Ontology | PECO | A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments. | Fri Nov 13 07:26:45 GMT 2020 |
Search Terms Properties Individuals Download |
| PHI-base Ontology | PHI | Pathogen-Host Interaction database Ontology used by Ensembl | Mon Dec 10 09:03:07 GMT 2018 |
Search Terms Properties Individuals Download |
| Pathogen Host Interactions Phenotype Ontology | PHIPO | Ontology of species-neutral phenotypes observed in pathogen-host interactions. | Fri Jul 16 04:12:16 BST 2021 |
Search Terms Properties Individuals Download |
| Planarian Anatomy Ontology (PLANA) | PLANA | PLANA, the PLANarian Anatomy Ontology, encompasses the anatomy of developmental stages and adult biotypes of Schmidtea mediterranea. | Thu Mar 03 11:18:54 GMT 2022 |
Search Terms Properties Individuals Download |
| Planarian Phenotype Ontology (PLANP) | PLANP | Planarian Phenotype Ontology is an ontology of phenotypes observed in the planarian Schmidtea mediterranea. | Sat Apr 11 19:21:50 BST 2020 |
Search Terms Properties Individuals Download |
| Plant Ontology | PO | The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data. | Sat Aug 21 14:17:39 BST 2021 |
Search Terms Properties Individuals Download |
| Porifera (sponge) ontology | PORO | An ontology describing the anatomical structures and characteristics of Porifera (sponges) | Tue Nov 09 05:04:32 GMT 2021 |
Search Terms Properties Individuals Download |
| Plant Phenology Ontology | PPO | An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales. | Tue Oct 30 05:07:24 GMT 2018 |
Search Terms Properties Individuals Download |
| PRotein Ontology (PRO) | PR | An ontological representation of protein-related entities | Wed Aug 31 22:43:56 BST 2022 |
Search Terms Properties Individuals Download |
| PRIDE Controlled Vocabulary | PRIDE | The PRIDE PRoteomics IDEntifications (PRIDE) database is a centralized, standards compliant, public data repository for proteomics data, including protein and peptide identifications, post-translational modifications and supporting spectral evidence. | Thu Nov 17 15:48:35 GMT 2022 |
Search Terms Properties Individuals Download |
| Probability Distribution Ontology | PROBONTO | ProbOnto, is an ontology-based knowledge base of probability distributions, featuring more than eighty uni- and multivariate distributions with their defining functions, characteristics, relationships and reparameterisation formulas. | Wed May 17 12:18:40 BST 2017 |
Search Terms Properties Individuals Download |
| PROCO: PROcess Chemistry Ontology | PROCO | PROCO (PROcess Chemistry Ontology) is a formal ontology that aims to standardly represent entities and relations among entities in the domain of process chemistry. | Wed Jun 29 13:34:44 BST 2022 |
Search Terms Properties Individuals Download |
| Provenance Ontology (PROV-O) | PROV | Thu Jun 03 09:57:08 BST 2021 |
Search Terms Properties Individuals Download |
|
| Performance Summary Display Ontology | PSDO | Performance Summary Display Ontology (PSDO) (pronounced "pseudo" or "sudo") is an application ontology about charts, tables, and graphs that are used to communicate performance information to employees and teams in organizations. PSDO's domain focus is on healthcare organizations that use performance summary displays in clinical dashboards and feedback interventions for healthcare professionals and teams. The displays commonly show information about the quality of care and health outcomes that has been derived from clinical data using performance measures (aka metrics, process indicators, quality measures, etc). PSDO uses Basic Formal Ontology as its upper level ontology. This work is not peer-reviewed. | Mon Jan 04 17:06:24 GMT 2021 |
Search Terms Properties Individuals Download |
| Plant Stress Ontology | PSO | The Plant Stress Ontology describes biotic and abiotic stresses that a plant may encounter. | Wed Jul 15 12:06:10 BST 2020 |
Search Terms Properties Individuals Download |
| Pathway ontology | PW | A controlled vocabulary for annotating gene products to pathways. | Wed Oct 23 10:16:31 BST 2019 |
Search Terms Properties Individuals Download |
| Radiation Biology Ontology | RBO | RBO is an ontology for the effects of radiation on biota in terrestrial and space environments. | Fri Jun 17 20:14:36 BST 2022 |
Search Terms Properties Individuals Download |
| REPRODUCE-ME Ontology | REPR | The REPRODUCE-ME ontology is an extension of the PROV-O and the P-Plan ontology to describe a complete path of a scientific experiment. It expresses the REPRODUCE-ME Data Model using the OWL2 Web Ontology Language (OWL2). It provides a set of classes and properties to represent a scientific experiment including its computational and non-computational steps to track the provenance of results. It describes a complete path of a scientific experiment considering the use-case of biological imaging and microscopy experiments, computational experiments, including Jupyter notebooks and scripts. It describes an experiment and its data, agents, activities, plans, steps, variables, instruments, materials, and settings required for its reproducibility. | Thu Nov 05 18:04:04 GMT 2020 |
Search Terms Properties Individuals Download |
| Regulation of Transcription Ontology | ReTO | Regulation of Transcription | Tue Sep 17 09:49:12 BST 2019 |
Search Terms Properties Individuals Download |
| Physico-chemical process | REX | An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time. | Mon Nov 20 05:52:04 GMT 2017 |
Search Terms Properties Individuals Download |
| Regulation of Gene Expression Ontology | ReXO | Regulation of Gene Expression | Thu Apr 11 06:45:12 BST 2019 |
Search Terms Properties Individuals Download |
| The RNA Ontology (RNAO): An Ontology for Integrating RNA Sequence and Structure Data | RNAO | Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures. | Mon Apr 15 20:00:40 BST 2019 |
Search Terms Properties Individuals Download |
| OBO Relations Ontology | RO | The OBO Relations Ontology (RO) is a collection of OWL relations (ObjectProperties) intended for use across a wide variety of biological ontologies. | Mon Dec 19 12:13:13 GMT 2022 |
Search Terms Properties Individuals Download |
| Rat Strain Ontology | RS | Ontology of rat strains | Sat Apr 11 21:44:08 BST 2020 |
Search Terms Properties Individuals Download |
| RXNO | RXNO | RXNO is the name reaction ontology. It contains more than 500 classes representing organic reactions such as the Diels–Alder cyclization. | Tue Jul 12 02:31:26 BST 2022 |
Search Terms Properties Individuals Download |
| Systems Biology Ontology | SBO | Wed Aug 31 17:55:45 BST 2022 |
Search Terms Properties Individuals Download |
|
| Sickle Cell Disease Ontology | SCDO | An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease. | Fri May 07 07:57:14 BST 2021 |
Search Terms Properties Individuals Download |
| Sustainable Development Goals Interface Ontology | SDGIO | An OBO-compliant ontology representing the entities referenced by the SDGs, their targets, and indicators. | Wed Jul 06 01:48:08 BST 2022 |
Search Terms Properties Individuals Download |
| Scientific Evidence and Provenance Information Ontology | SEPIO | An ontology for representing the provenance of scientific claims and the evidence that supports them. | Mon Aug 19 13:15:36 BST 2019 |
Search Terms Properties Individuals Download |
| ShareLoc | SHARELOC | ShareLoc defines terms to annotate data sets from single molecule localization microscopy, including but not limited to: imaging technique, biological structures or molecules of interest, cell types, experimental condition, labeling method, fixation protocol, etc. | Wed Jun 15 14:03:16 BST 2022 |
Search Terms Properties Individuals Download |
| Social Insect Behavior Ontology | SIBO | Social Behavior in insects | Wed Mar 23 20:03:52 GMT 2016 |
Search Terms Properties Individuals Download |
| Semanticscience Integrated Ontology | SIO | The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their attributes. | Fri Jul 09 09:42:36 BST 2021 |
Search Terms Properties Individuals Download |
| SNOMED CT (International Edition) | SNOMED | SNOMED CT or SNOMED Clinical Terms is a systematically organized computer processable collection of medical terms providing codes, terms, synonyms and definitions used in clinical documentation and reporting. | Fri Jul 30 16:33:09 BST 2021 |
Search Terms Properties Individuals |
| Sequence types and features ontology | SO | A structured controlled vocabulary for sequence annotation, for the exchange of annotation data and for the description of sequence objects in databases. | Tue Nov 23 06:05:26 GMT 2021 |
Search Terms Properties Individuals Download |
| Spider Ontology | SPD | An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow). | Wed Feb 27 09:45:24 GMT 2019 |
Search Terms Properties Individuals Download |
| FAIRsharing Subject Ontology (SRAO) | SRAO | The FAIRsharing Subject Ontology (SRAO) is an application ontology for the categorization of research disciplines across all research domains, from the humanities to the natural sciences. It utilizes multiple external vocabularies. | Fri Nov 19 06:26:01 GMT 2021 |
Search Terms Properties Individuals Download |
| STATO: the statistical methods ontology | STATO | STATO is the statistical methods ontology. It contains concepts and properties related to statistical methods, probability distributions and other concepts related to statistical analysis, including relationships to study designs and plots. | Fri Sep 07 04:55:31 BST 2018 |
Search Terms Properties Individuals Download |
| Software ontology | SWO | The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community. | Thu Nov 17 15:03:58 GMT 2022 |
Search Terms Properties Individuals Download |
| Symptom Ontology | SYMP | The Symptom Ontology has been developed as a standardized ontology for symptoms of human diseases. | Mon Jul 18 19:50:06 BST 2022 |
Search Terms Properties Individuals Download |
| terms4FAIRskills | T4FS | A terminology for the skills necessary to make data FAIR and to keep it FAIR. | Thu Nov 17 17:18:33 GMT 2022 |
Search Terms Properties Individuals Download |
| Tick Anatomy Ontology | TADS | The anatomy of the Tick, <i>Families: Ixodidae, Argassidae</i> | Fri Feb 28 15:48:02 GMT 2020 |
Search Terms Properties Individuals Download |
| Taxonomic rank vocabulary | TAXRANK | A vocabulary of taxonomic ranks (species, family, phylum, etc) | Mon Apr 18 14:03:17 BST 2016 |
Search Terms Properties Individuals Download |
| Terminology for Description of Dynamics | TEDDY | TEDDY is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems and Synthetic Biology. | Tue Jan 18 03:11:56 GMT 2022 |
Search Terms Properties Individuals Download |
| Mosquito gross anatomy ontology | TGMA | A structured controlled vocabulary of the anatomy of mosquitoes. | Fri Feb 28 17:05:10 GMT 2020 |
Search Terms Properties Individuals Download |
| Plant Trait Ontology | TO | A controlled vocabulary to describe phenotypic traits in plants. | Wed Apr 20 07:40:19 BST 2022 |
Search Terms Properties Individuals Download |
| Pathogen Transmission Ontology | TRANS | The Pathogen Transmission Ontology describes the tranmission methods of human disease pathogens describing how a pathogen is transmitted from one host, reservoir, or source to another host. The pathogen transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles. | Wed Aug 05 04:40:00 BST 2020 |
Search Terms Properties Individuals Download |
| Teleost taxonomy ontology | TTO | An ontology covering the taxonomy of teleosts (bony fish) | Mon Mar 26 07:18:51 BST 2018 |
Search Terms Properties Individuals Download |
| TOXic Process Ontology (TXPO) | TXPO | Elucidating the mechanism of toxicity is crucial in drug safety evaluations. TOXic Process Ontology (TXPO) systematizes a wide variety of terms involving toxicity courses and processes. The first version of TXPO focuses on liver toxicity. The TXPO contains an is-a hierarchy that is organized into three layers: the top layer contains general terms, mostly derived from the Basic Formal Ontology. The intermediate layer contains biomedical terms in OBO foundry from UBERON, Cell Ontology, NCBI Taxon, ChEBI, Gene Ontology, PATO, OGG, INOH, HINO, NCIT, DOID and Relational ontology (RO). The lower layer contains toxicological terms. In applied work, we have developed a prototype of TOXPILOT, a TOXic Process InterpretabLe knOwledge sysTem. TOXPILOT provides visualization maps of the toxic course, which facilitates capturing the comprehensive picture for understanding toxicity mechanisms. A prototype of TOXPILOT is available: https://toxpilot.nibiohn.go.jp | Mon Feb 14 11:23:50 GMT 2022 |
Search Terms Properties Individuals Download |
| Uber-anatomy ontology | UBERON | Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data. | Thu Nov 17 18:50:23 GMT 2022 |
Search Terms Properties Individuals Download |
| Unimod protein modification database for mass spectrometry | UNIMOD | Unimod is a community supported, comprehensive database of protein modifications for mass spectrometry applications. That is, accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by all types of natural and artificial modifications. Other important information includes any mass change, (neutral loss), that occurs during MS/MS analysis, an d site specificity, (which residues are susceptible to modification and any constraints on the position of the modification within the protein or peptide). | Wed Apr 20 09:02:01 BST 2022 |
Search Terms Properties Individuals Download |
| Units of measurement ontology | UO | Metrical units for use in conjunction with PATO | Sat Jun 18 00:50:03 BST 2022 |
Search Terms Properties Individuals Download |
| Unipathway | UPA | A manually curated resource for the representation and annotation of metabolic pathways | Thu Jul 25 03:09:36 BST 2019 |
Search Terms Properties Individuals Download |
| Unified phenotype ontology (uPheno) | UPHENO | The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology. | Tue Oct 31 04:30:26 GMT 2017 |
Search Terms Properties Individuals Download |
| Variation Ontology | VariO | Variation Ontology, VariO, is an ontology for standardized, systematic description of effects, consequences and mechanisms of variations. | Thu May 27 07:17:45 BST 2021 |
Search Terms Properties Individuals Download |
| Vertebrate Breed Ontology | VBO | Vertebrate Breed Ontology is an ontology created to serve as a single computable resource for vertebrate breed names. | Mon Nov 28 10:57:54 GMT 2022 |
Search Terms Properties Individuals Download |
| The Virus Infectious Disease Ontology | VIDO | The Virus Infectious Disease Ontology (IDO Virus) is an extension of the Infectious Disease Ontology (IDO). IDO Virus follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used by Virologists, i.e. virus, prion, satellite, viroid, etc. | Fri Sep 25 07:22:00 BST 2020 |
Search Terms Properties Individuals Download |
| Vaccine Ontology | VO | The Vaccine Ontology (VO) is a biomedical ontology in the domain of vaccine and vaccination. VO aims to standardize vaccine annotation, integrate various vaccine data, and support computer-assisted reasoning. VO supports basic vaccine R&D and clincal vaccine usage. VO is being developed as a community-based ontology with support and collaborations from the vaccine and bio-ontology communities. | Wed Jun 29 16:15:52 BST 2022 |
Search Terms Properties Individuals Download |
| Vertebrate trait ontology | VT | An ontology of traits covering vertebrates | Wed Jun 15 12:33:45 BST 2022 |
Search Terms Properties Individuals Download |
| Vertebrate Taxonomy Ontology | VTO | Comprehensive hierarchy of extinct and extant vertebrate taxa. | Mon Nov 16 06:33:36 GMT 2020 |
Search Terms Properties Individuals Download |
| C. elegans Gross Anatomy Ontology | WBbt | Ontology about the gross anatomy of the C. elegans | Sat Jun 18 02:39:03 BST 2022 |
Search Terms Properties Individuals Download |
| C. elegans Development Ontology | WBls | Ontology about the development and life stages of the C. elegans | Wed Jun 29 17:06:02 BST 2022 |
Search Terms Properties Individuals Download |
| C elegans Phenotype Ontology | WBPhenotype | Ontology about C. elegans and other nematode phenotypes | Wed Jun 29 17:57:01 BST 2022 |
Search Terms Properties Individuals Download |
| Xenopus Anatomy Ontology | XAO | XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis. | Thu Aug 05 15:07:58 BST 2021 |
Search Terms Properties Individuals Download |
| Experimental condition ontology | XCO | Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms. | Sun Apr 12 06:58:15 BST 2020 |
Search Terms Properties Individuals Download |
| Cross-linker reagents ontology | XL | A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry. |
Search Terms Properties Individuals Download |
|
| HUPO-PSI cross-linking and derivatization reagents controlled vocabulary | XLMOD | A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry. | Mon Feb 14 12:18:36 GMT 2022 |
Search Terms Properties Individuals Download |
| Xenopus Phenotype Ontology | XPO | XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and tropicalis. | Sun Mar 07 04:26:31 GMT 2021 |
Search Terms Properties Individuals Download |
| Zebrafish Experimental Conditions Ontology | ZECO | Ontology of Zebrafish Experimental Conditions | Tue Feb 22 00:29:44 GMT 2022 |
Search Terms Properties Individuals Download |
| Zebrafish Anatomy Ontology (ZFA) | ZFA | ZFA description. | Mon Mar 21 15:46:25 GMT 2022 |
Search Terms Properties Individuals Download |
| Zebrafish developmental stages ontology | ZFS | Developmental stages of the Zebrafish | Sun Apr 12 11:39:46 BST 2020 |
Search Terms Properties Individuals Download |
| Zebrafish Phenotype Ontology (ZP) | ZP | The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism. | Mon Dec 13 07:47:24 GMT 2021 |
Search Terms Properties Individuals Download |