Search result(s) for ontology

Published data collections

Antibiotic Resistance Genes Database The Antibiotic Resistance Genes Database (ARDB) is a manually curated database which characterises genes involved in antibiotic resistance. Each gene and resist [...]
ArachnoServer ArachnoServer ( is a manually curated database providing information on the sequence, structure and biological activity of protein toxins [...]
BioAssay Ontology The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of cate [...]
BioPortal BioPortal is an open repository of biomedical ontologies that provides access via Web services and Web browsers to ontologies developed in OWL, RDF, OBO format [...]
Brenda Tissue Ontology The Brenda tissue ontology is a structured controlled vocabulary eastablished to identify the source of an enzyme cited in the Brenda enzyme database. It compri [...]
Candida Genome Database The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pat [...]
Cell Cycle Ontology The Cell Cycle Ontology is an application ontology that captures and integrates detailed knowledge on the cell cycle process.
Cell Type Ontology The Cell Ontology is designed as a structured controlled vocabulary for cell types. The ontology was constructed for use by the model organism and other bioinfo [...]
ChEBI Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on 'small' chemical compounds.
CharProt CharProt is a database of biochemically characterized proteins designed to support automated annotation pipelines. Entries are annotated with gene name, symbol [...]
EDAM Ontology EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled vocabulary [...]
Environment Ontology The Environment Ontology is a resource and research target for the semantically controlled description of environmental entities. The ontology's initial aim was [...]
Evidence Code Ontology Evidence codes can be used to specify the type of supporting evidence for a piece of knowledge. This allows inference of a 'level of support' between an entity [...]
Experimental Factor Ontology The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases. It combines parts of several [...]
FMA The Foundational Model of Anatomy Ontology (FMA) is a biomedical informatics ontology. It is concerned with the representation of classes or types and relations [...]
FamPlex FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships.
FoodOn Food Ontology FoodOn is a comprehensive and easily accessible global farm-to-fork ontology about food that accurately and consistently describes foods commonly known in cultu [...]
FuncBase Fly Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing qua [...]
FuncBase Human Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing qua [...]
FuncBase Mouse Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing qua [...]
FuncBase Yeast Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing qua [...]
GOA The GOA (Gene Ontology Annotation) project provides high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB) and Interna [...]
Gene Ontology The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism.
Gene Ontology Reference The GO reference collection is a set of abstracts that can be cited in the GO ontologies (e.g. as dbxrefs for term definitions) and annotation files (in the Ref [...]
Gramene Growth Stage Ontology Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expresse [...]
Human Disease Ontology The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consistent, reu [...]
Human Phenotype Ontology The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO desc [...] Ontology Ontology
Infectious Disease Ontology Infectious Disease Ontology holds entities relevant to both biomedical and clinical aspects of most infectious diseases.
Information Artifact Ontology An ontology of information entities, originally driven by work by the Ontology of Biomedical Investigation (OBI) digital entity and realizable information entit [...]
KiSAO The Kinetic Simulation Algorithm Ontology (KiSAO) is an ontology that describes simulation algorithms and methods used for biological kinetic models, and the re [...]
MGED Ontology The MGED Ontology (MO) provides terms for annotating all aspects of a microarray experiment from the design of the experiment and array layout, through to the p [...]
MIRIAM Registry collection MIRIAM Registry is an online resource created to catalogue collections (Gene Ontology, Taxonomy or PubMed are some examples) and the corresponding resources (ph [...]
MIRIAM Registry resource MIRIAM Registry is an online resource created to catalogue data types (Gene Ontology, Taxonomy or PubMed are some examples), their URIs and the corresponding re [...]
Mammalian Phenotype Ontology The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been a [...]
Mass Spectrometry Controlled Vocabulary The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure e [...]
Mathematical Modelling Ontology The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationsh [...]
MeSH 2012 MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hier [...]
MedDRA The Medical Dictionary for Regulatory Activities (MedDRA) was developed by the International Council for Harmonisation of Technical Requirements for Registratio [...]
Molecular Interactions Ontology The Molecular Interactions (MI) ontology forms a structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. [...]
Mouse Adult Gross Anatomy A structured controlled vocabulary of the adult anatomy of the mouse (Mus)
NeuroLex The NeuroLex project is a dynamic lexicon of terms used in neuroscience. It is supported by the Neuroscience Information Framework project and incorporates inf [...]
OMIT The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in p [...]
Ontology for Biomedical Investigations The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investigations. The [...]
Ontology of Physics for Biology The OPB is a reference ontology of classical physics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scale [...]
Orphanet Rare Disease Ontology The Orphanet Rare Disease ontology (ORDO) is a structured vocabulary for rare diseases, capturing relationships between diseases, genes and other relevant featu [...]
OrthoDB OrthoDB presents a catalog of eukaryotic orthologous protein-coding genes across vertebrates, arthropods, and fungi. Orthology refers to the last common ancesto [...]
PATO PATO is an ontology of phenotypic qualities, intended for use in a number of applications, primarily defining composite phenotypes and phenotype annotation.
Pathway Ontology The Pathway Ontology captures information on biological networks, the relationships between netweorks and the alterations or malfunctioning of such networks wit [...]
PhosphoPoint Kinase PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and thei [...]
PhosphoPoint Phosphoprotein PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and thei [...]
Plant Environment Ontology The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a populat [...]
Plant Ontology The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data.
ProbOnto ProbOnto, is an ontology-based knowledge base of probability distributions, featuring uni- and multivariate distributions with their defining functions, charact [...]
Protein Modification Ontology The Proteomics Standards Initiative modification ontology (PSI-MOD) aims to define a concensus nomenclature and ontology reconciling, in a hierarchical represe [...]
Protein Ontology The PRotein Ontology (PRO) has been designed to describe the relationships of proteins and protein evolutionary classes, to delineate the multiple protein forms [...]
Relation Ontology The OBO Relation Ontology provides consistent and unambiguous formal definitions of the relational expressions used in biomedical ontologies.
Sequence Ontology The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to fac [...]
Systems Biology Ontology The goal of the Systems Biology Ontology is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Sys [...]
TEDDY The Terminology for Description of Dynamics (TEDDY) is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models [...]
Taxonomy The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined.
Tetrahymena Genome Database The Tetrahymena Genome Database (TGD) Wiki is a database of information about the Tetrahymena thermophila genome sequence. It provides information curated from [...]
UBERON Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as struct [...]
UMLS The Unified Medical Language System is a repository of biomedical vocabularies. Vocabularies integrated in the UMLS Metathesaurus include the NCBI taxonomy, Gen [...]
Unit Ontology Ontology of standardized units
VariO The Variation Ontology (VariO) is an ontology for the standardized, systematic description of effects, consequences and mechanisms of variations. It describes t [...]

66 published data collections returned.