Data collections: recently updated

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NameNamespaceDefinition
Infectious Disease Ontology ido Infectious Disease Ontology holds entities relevant to both biomedical and clinical aspects of most infectious diseases.
ZFIN Bioentity zfin ZFIN serves as the zebrafish model organism database. This collection references all zebrafish biological entities in ZFIN.
Bacterial Diversity Metadatabase bacdive BacDive—the Bacterial Diversity Metadatabase merges detailed strain-linked information on the different aspects of bacterial and archaeal biodiversity.
Bgee gene bgee.gene Bgee is a database to retrieve and compare gene expression patterns in multiple species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). This collection references genes in Bgee.
Addgene Plasmid Repository addgene Addgene is a non-profit plasmid repository. Addgene facilitates the exchange of genetic material between laboratories by offering plasmids and their associated cloning data to not-for-profit laboratories around the world.
Human Pluripotent Stem Cell Registry hpscreg hPSCreg is a freely accessible global registry for human pluripotent stem cell lines (hPSC-lines).
dbGaP dbgap The database of Genotypes and Phenotypes (dbGaP) archives and distributes the results of studies that have investigated the interaction of genotype and phenotype.
OID Repository oid OIDs provide a persistent identification of objects based on a hierarchical structure of Registration Authorities (RA), where each parent has an object identifier and allocates object identifiers to child nodes.
Protein Data Bank pdb The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules.
FlowRepository flowrepository FlowRepository is a database of flow cytometry experiments where you can query and download data collected and annotated according to the MIFlowCyt standard. It is primarily used as a data deposition place for experimental findings published in peer-reviewed journals in the flow cytometry field.
arXiv arxiv arXiv is an e-print service in the fields of physics, mathematics, non-linear science, computer science, and quantitative biology.
OMIM mim Online Mendelian Inheritance in Man is a catalog of human genes and genetic disorders.
BioModels Database biomodels.db BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests.
Data Object Service ga4ghdos Assists in resolving data across cloud resources.
Development Data Object Service dev.ga4ghdos Assists in resolving data across cloud resources.
ClinVar Submission clinvar.submission ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submissions, and is based on SCV accession.
ClinVar Record clinvar.record ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Record Report, based on RCV accession.
ClinVar Variant clinvar ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Variant identifier.
Mouse Genome Database mgi The Mouse Genome Database (MGD) project includes data on gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data.
RefSeq refseq The Reference Sequence (RefSeq) collection aims to provide a comprehensive, integrated, non-redundant set of sequences, including genomic DNA, transcript (RNA), and protein products.
NCIt ncit NCI Thesaurus (NCIt) provides reference terminology covering vocabulary for clinical care, translational and basic research, and public information and administrative activities, providing a stable and unique identification code.
restricted logoSWISS-MODEL Repository swiss-model The SWISS-MODEL Repository is a database of 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline for UniProtKB protein sequences.
restricted logoGeneCards genecards The GeneCards human gene database stores gene related transcriptomic, genetic, proteomic, functional and disease information. It uses standard nomenclature and approved gene symbols. GeneCards presents a complete summary for each human gene.
Nucleotide Sequence Database insdc The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences.
FlyBase fb FlyBase is the database of the Drosophila Genome Projects and of associated literature.
RiceNetDB Gene ricenetdb.gene RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
RiceNetDB Protein ricenetdb.protein RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
RiceNetDB Compound ricenetdb.compound RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
RiceNetDB Reaction ricenetdb.reaction RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
RiceNetDB miRNA ricenetdb.miRNA RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
30 of the most recently created or modified data collections.