Data collection: Mass Spectrometry Controlled Vocabulary

mass spectrometry controlled vocabulary

General information

Recommended name Mass Spectrometry Controlled Vocabulary
Description The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance.
Identifier pattern^MS:\d{7}$
Registry identifierMIR:00000590

Identification schemes

Namespace ms
URI http://identifiers.org/ms/
Alternative URI schemes  

Physical locations (resources)

Resource
MIR:00100786
Description Mass Spectrometry Controlled Vocabulary through OLS
Access URLs HTML   (using the example identifier: MS:1000001)
Institution European Bioinformatics Institute, Hinxton, Cambridge, UK
Website https://www.ebi.ac.uk/ols/ontologies/ms
Resource
MIR:00100787
Description Mass Spectrometry Controlled Vocabulary through BioPortal
Access URLs HTML   (using the example identifier: MS:1000001)
Institution National Center for Biomedical Ontology, Stanford, USA
Website https://bioportal.bioontology.org/ontologies/MS

References