Data collection: Taxonomy

taxonomy

General information

Recommended name Taxonomy
Alternative name(s)
  • NEWT
  • NCBI taxonomy
  • NCBITAXON
Description The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined.
Identifier pattern^\d+$
Registry identifierMIR:00000006

Identification schemes

Namespace taxonomy
URI http://identifiers.org/taxonomy/
Alternative URI schemes  
Deprecated URI scheme(s)   Display/Hide deprecated URI scheme(s)

Physical locations (resources)

Resource
MIR:00100019
Description Taxonomy through UniProt PURL
Access URLs HTML   (using the example identifier: 9606)
Institution UniProt Consortium, USA, UK and Switzerland
Website http://www.uniprot.org/taxonomy/
Resource
MIR:00100770
Description NCBI Taxonomy through OLS
Access URLs HTML   (using the example identifier: 9606)
Institution European Bioinformatics Institute, Hinxton, Cambridge, UK
Website https://www.ebi.ac.uk/ols/ontologies/ncbitaxon/
Resource
MIR:00100299
Description European Nucleotide Archive (ENA)
Access URLs HTML   (using the example identifier: 9606)
Institution European Bioinformatics Institute, Hinxton, Cambridge, UK
Website http://www.ebi.ac.uk/ena/
primary Resource
MIR:00100007
Description NCBI Taxonomy
Access URLs HTML   (using the example identifier: 9606)
Institution National Center for Biotechnology Information (NCBI), USA
Website http://www.ncbi.nlm.nih.gov/Taxonomy/
Resource
MIR:00100507
Description BioPortal
Access URLs HTML   (using the example identifier: 9606)
Institution National Center for Biomedical Ontology, Stanford, USA
Website http://bioportal.bioontology.org/ontologies/NCBITAXON
Resource
MIR:00100695
Description Bio2RDF
Access URLs HTML   (using the example identifier: 9606)
Institution Bio2RDF.org
Website http://taxonomy.bio2rdf.org/fct/

References