2. statistical-result
2.1. Fields
| Path | Type | Description |
|---|---|---|
|
|
The document identifier unique to this dataset. |
|
|
The database identifier for the dataset. |
|
|
The type of data represented in this dataset. |
|
|
List of anatomy term identifiers related to the dataset. |
|
|
List of anatomy term names related to the dataset. |
|
|
List of intermediate anatomy term identifiers. |
|
|
List of intermediate anatomy term names. |
|
|
List of top-level anatomy term identifiers. |
|
|
List of top-level anatomy term names. |
|
|
List of optional MP term identifiers. |
|
|
List of optional MP term names. |
|
|
The identifier for the MP term. |
|
|
The name of the MP term. |
|
|
List of top-level MP term identifiers. |
|
|
List of top-level MP term names. |
|
|
List of intermediate MP term identifiers. |
|
|
List of intermediate MP term names. |
|
|
The identifier for the male MP term. |
|
|
The name of the male MP term. |
|
|
List of male top-level MP term identifiers. |
|
|
List of male top-level MP term names. |
|
|
List of male intermediate MP term identifiers. |
|
|
List of male intermediate MP term names. |
|
|
The identifier for the female MP term. |
|
|
The name of the female MP term. |
|
|
List of female top-level MP term identifiers. |
|
|
List of female top-level MP term names. |
|
|
List of female intermediate MP term identifiers. |
|
|
List of female intermediate MP term names. |
|
|
The genetic background of the subjects in the dataset. |
|
|
The center where the data was produced. |
|
|
External database identifier associated with the dataset. |
|
|
Unique identifier for the dataset. |
|
|
Identifier of the organisation associated with the dataset. |
|
|
Identifier of the phenotyping center where the data was generated. |
|
|
Project identifier associated with the dataset. |
|
|
The mean value for male controls. |
|
|
The mean value for male mutants. |
|
|
The mean value for female controls. |
|
|
The mean value for female mutants. |
|
|
Effect size for genotype low versus normal/high comparison. |
|
|
Effect size for genotype low/normal versus high comparison. |
|
|
Effect size for female low versus normal/high comparison. |
|
|
Effect size for female low/normal versus high comparison. |
|
|
Effect size for male low versus normal/high comparison. |
|
|
Effect size for male low/normal versus high comparison. |
|
|
Categories used in the statistical analysis. |
|
|
P-value for the categorical analysis. |
|
|
Effect size for the categorical analysis. |
|
|
Indicates if batch effects are significant. |
|
|
Indicates if variance is significant. |
|
|
P-value for the null hypothesis test. |
|
|
P-value for the genotype effect. |
|
|
Standard error estimate for the genotype effect. |
|
|
Parameter estimate for the genotype effect. |
|
|
Percentage change for males. |
|
|
Percentage change for females. |
|
|
P-value for the sex effect. |
|
|
Standard error estimate for the sex effect. |
|
|
Parameter estimate for the sex effect. |
|
|
P-value for the weight effect. |
|
|
Standard error estimate for the weight effect. |
|
|
Parameter estimate for the weight effect. |
|
|
Results of the BLUPs test. |
|
|
Results of the rotated residuals test. |
|
|
Estimate of the intercept. |
|
|
Standard error estimate of the intercept estimate. |
|
|
Indicates if interaction effects are significant. |
|
|
P-value for the interaction effect. |
|
|
Bandwidth used in soft windowing. |
|
|
Shape used in soft windowing. |
|
|
Peaks identified in soft windowing. |
|
|
Minimum observations required for soft windowing. |
|
|
Total observations or weight for soft windowing. |
|
|
Threshold used in soft windowing. |
|
|
Number of degrees of freedom in soft windowing. |
|
|
Notes on the degree of evidence in soft windowing. |
|
|
List of metadata associated with the dataset. |
|
|
The name of the resource. |
|
|
The full name of the resource. |
|
|
The unique identifier for the resource. |
|
|
List of names of projects associated with the dataset. |
|
|
The name of the phenotyping center where the data was generated. |
|
|
The stable identifier for the pipeline. |
|
|
The stable key for the pipeline. |
|
|
The name of the pipeline. |
|
|
The unique identifier for the pipeline. |
|
|
List of stable identifiers for the procedures. |
|
|
List of stable keys for the procedures. |
|
|
The name of the procedure. |
|
|
The unique identifier for the procedure. |
|
|
The stable identifier for the parameter. |
|
|
List of stable keys for the parameter. |
|
|
The name of the parameter. |
|
|
The unique identifier for the parameter. |
|
|
The identifier for the colony. |
|
|
The symbol for the genetic marker. |
|
|
The accession ID for the genetic marker. |
|
|
The symbol for the allele. |
|
|
The name of the allele. |
|
|
The accession ID for the allele. |
|
|
The name of the strain. |
|
|
The accession ID for the strain. |
|
|
The sex of the organism. |
|
|
The zygosity of the organism. |
|
|
The method used for control selection. |
|
|
The dependent variable being measured. |
|
|
The group classification of the metadata. |
|
|
The frame of data being referred to. |
|
|
The P-value for the knockout effect in females. |
|
|
The standard error estimate for the knockout effect in females. |
|
|
The parameter estimate for the knockout effect in females. |
|
|
The effect size for females. |
|
|
The P-value for the knockout effect in males. |
|
|
The standard error estimate for the knockout effect in males. |
|
|
The parameter estimate for the knockout effect in males. |
|
|
The effect size for males. |
|
|
A classification tag for the dataset. |
|
|
List indicating the sex(es) for which phenotype data is available. |
|
|
The accession code for the life stage. |
|
|
The name of the life stage. |
|
|
Indicates whether the findings are statistically significant. |
|
|
The measured effect size in the dataset. |
|
|
The number of female controls in the dataset. |
|
|
The number of female mutants in the dataset. |
|
|
The P-value for females comparing low/normal versus high categories. |
|
|
The P-value for females comparing low versus normal/high categories. |
|
|
The P-value for genotype comparison between low/normal versus high categories. |
|
|
The P-value for genotype comparison between low versus normal/high categories. |
|
|
The genotype information for group 1. |
|
|
Results of the residuals normality test for group 1. |
|
|
The genotype information for group 2. |
|
|
Results of the residuals normality test for group 2. |
|
|
The number of male controls in the dataset. |
|
|
The number of male mutants in the dataset. |
|
|
The P-value for males comparing low/normal versus high categories. |
|
|
The P-value for males comparing low versus normal/high categories. |
|
|
The general P-value associated with the statistical test. |
|
|
The statistical method applied in the analysis. |
|
|
The status of the dataset or analysis. |
2.2. Example Json
HTTP/1.1 200 OK
Content-Type: application/json
Content-Length: 5648
{
"doc_id" : "DOC123",
"db_id" : 100,
"data_type" : "Gene Expression",
"anatomy_term_id" : [ "AID123", "AID456" ],
"anatomy_term_name" : [ "Heart", "Liver" ],
"intermediate_anatomy_term_id" : [ "IAID789", "IAID101" ],
"intermediate_anatomy_term_name" : [ "Ventricle", "Lobe" ],
"top_level_anatomy_term_id" : [ "TAID112", "TAID113" ],
"top_level_anatomy_term_name" : [ "Circulatory System", "Digestive System" ],
"mp_term_id_options" : [ "MPID123", "MPID456" ],
"mp_term_name_options" : [ "Hypertrophy", "Necrosis" ],
"mp_term_id" : "MPID789",
"mp_term_name" : "Atrophy",
"top_level_mp_term_id" : [ "TMPID123", "TMPID456" ],
"top_level_mp_term_name" : [ "Muscle Structure", "Cell Death" ],
"intermediate_mp_term_id" : [ "IMPID789", "IMPID101" ],
"intermediate_mp_term_name" : [ "Muscle Size", "Apoptosis" ],
"male_mp_term_id" : "MMPID123",
"male_mp_term_name" : "Male Hypertrophy",
"male_top_level_mp_term_id" : [ "MTMPID123", "MTMPID456" ],
"male_top_level_mp_term_name" : [ "Male Muscle Structure", "Male Cell Death" ],
"male_intermediate_mp_term_id" : [ "MIMPID789", "MIMPID101" ],
"male_intermediate_mp_term_name" : [ "Male Muscle Size", "Male Apoptosis" ],
"female_mp_term_id" : "FMPID123",
"female_mp_term_name" : "Female Hypertrophy",
"female_top_level_mp_term_id" : [ "FTMPID123", "FTMPID456" ],
"female_top_level_mp_term_name" : [ "Female Muscle Structure", "Female Cell Death" ],
"female_intermediate_mp_term_id" : [ "FIMPID789", "FIMPID101" ],
"female_intermediate_mp_term_name" : [ "Female Muscle Size", "Female Apoptosis" ],
"resource_name" : "Resource Name",
"resource_fullname" : "Full Resource Name",
"resource_id" : 200,
"project_name" : [ "Project X", "Project Y" ],
"phenotyping_center" : "Center Z",
"pipeline_stable_id" : "PID123",
"pipeline_stable_key" : 300,
"pipeline_name" : "Pipeline Name",
"pipeline_id" : 400,
"procedure_stable_id" : [ "PRID123", "PRID456" ],
"procedure_stable_key" : [ 500, 600 ],
"procedure_name" : "Procedure Name",
"procedure_id" : 700,
"parameter_stable_id" : "PAID123",
"parameter_stable_key" : [ 800 ],
"parameter_name" : "Parameter Name",
"parameter_id" : 900,
"colony_id" : "Colony123",
"marker_symbol" : "Gene123",
"marker_accession_id" : "M123456",
"allele_symbol" : "Allele123",
"allele_name" : "Allele Name",
"allele_accession_id" : "A123456",
"strain_name" : "Strain Name",
"strain_accession_id" : "S123456",
"sex" : "Male",
"zygosity" : "Homozygote",
"control_selection_method" : "Random",
"dependent_variable" : "Weight",
"metadata_group" : "Group1",
"data_frame" : "Frame1",
"genetic_background" : "C57BL/6N",
"production_center" : "EMBL-EBI",
"external_db_id" : 101,
"id" : 102,
"organisation_id" : 103,
"phenotyping_center_id" : 104,
"project_id" : 105,
"male_control_mean" : 0.5,
"male_mutant_mean" : 1.5,
"female_control_mean" : 0.4,
"female_mutant_mean" : 1.4,
"genotype_effect_size_low_vs_normal_high" : 0.5,
"genotype_effect_size_low_normal_vs_high" : 0.6,
"female_effect_size_low_vs_normal_high" : 0.7,
"female_effect_size_low_normal_vs_high" : 0.8,
"male_effect_size_low_vs_normal_high" : 0.9,
"male_effect_size_low_normal_vs_high" : 1.0,
"categories" : [ "Category 1", "Category 2" ],
"categorical_p_value" : 0.07,
"categorical_effect_size" : 1.1,
"batch_significant" : true,
"variance_significant" : false,
"null_test_p_value" : 0.08,
"genotype_effect_p_value" : 0.09,
"genotype_effect_stderr_estimate" : 0.1,
"genotype_effect_parameter_estimate" : 0.11,
"male_percentage_change" : "10%",
"female_percentage_change" : "20%",
"sex_effect_p_value" : 0.12,
"sex_effect_stderr_estimate" : 0.13,
"sex_effect_parameter_estimate" : 0.14,
"weight_effect_p_value" : 0.15,
"weight_effect_stderr_estimate" : 0.16,
"weight_effect_parameter_estimate" : 0.17,
"blups_test" : 0.2,
"rotated_residuals_test" : 0.21,
"intercept_estimate" : 0.22,
"intercept_estimate_stderr_estimate" : 0.23,
"interaction_significant" : true,
"interaction_effect_p_value" : 0.24,
"female_ko_effect_p_value" : 0.25,
"female_ko_effect_stderr_estimate" : 0.26,
"female_ko_parameter_estimate" : 0.27,
"female_effect_size" : 0.28,
"male_ko_effect_p_value" : 0.29,
"male_ko_effect_stderr_estimate" : 0.3,
"male_ko_parameter_estimate" : 0.31,
"male_effect_size" : 0.32,
"classification_tag" : "Tag1",
"phenotype_sex" : [ "Male", "Female" ],
"life_stage_acc" : "LS:001",
"life_stage_name" : "Adulthood",
"significant" : true,
"soft_windowing_bandwidth" : "Medium",
"soft_windowing_shape" : "Gaussian",
"soft_windowing_peaks" : "3",
"soft_windowing_min_obs_required" : "10",
"soft_windowing_total_obs_or_weight" : "50",
"soft_windowing_threshold" : "0.05",
"soft_windowing_number_of_doe" : "5",
"soft_windowing_doe_note" : "Doe Note Example",
"metadata" : [ "Metadata1", "Metadata2" ],
"effect_size" : 8.3,
"female_control_count" : 79,
"female_mutant_count" : 7,
"female_pvalue_low_normal_vs_high" : 6.3,
"female_pvalue_low_vs_normal_high" : 8.5,
"genotype_pvalue_low_normal_vs_high" : 9.2,
"genotype_pvalue_low_vs_normal_high" : 4.1,
"group_1_genotype" : "control",
"group_1_residuals_normality_test" : 4.3,
"group_2_genotype" : "experimental",
"group_2_residuals_normality_test" : 4.3,
"male_control_count" : 23,
"male_mutant_count" : 21,
"male_pvalue_low_normal_vs_high" : 9.2,
"male_pvalue_low_vs_normal_high" : 9.2,
"p_value" : 0.6,
"statistical_method" : "Linear Mixed Model framework, LME, including Weight",
"status" : "Successful"
}
3. Latest updates
-
2024-04-15: Documentation Added