1. Introduction

2. pipeline

2.1. Fields

Path Type Description

fully_qualified_name

String

The fully qualified name associated with the experiment.

data_type

String

The data type of the experiment.

version

Number

The version of the experiment data.

parameter_id

Number

The unique identifier for the parameter.

parameter_stable_id

String

The stable identifier for the parameter.

parameter_name

String

The name of the parameter.

parameter_stable_key

Number

The stable key of the parameter.

procedure_id

Number

The unique identifier for the procedure.

procedure_stable_id

String

The stable identifier for the procedure.

procedure_name

String

The name of the procedure.

procedure_stable_key

Number

The stable key of the procedure.

pipeline_id

Number

The unique identifier for the pipeline.

pipeline_stable_id

String

The stable identifier for the pipeline.

pipeline_name

String

The name of the pipeline.

pipeline_stable_key

Number

The stable key of the pipeline.

required

Boolean

Indicates whether the parameter is required.

observation_type

String

The type of observation made in the experiment.

mp_terms

Array

List of Mammalian Phenotype (MP) Ontology terms associated with the experiment.

description

String

The description of the experiment.

unit_x

String

The unit of measurement for the X-axis.

unit_y

String

The unit of measurement for the Y-axis.

metadata

Boolean

Indicates whether the experiment includes metadata.

increment

Boolean

Indicates whether the parameter value increments.

categories

Array

The categories associated with the experiment.

has_options

Boolean

Indicates whether the experiment has options.

derived

Boolean

Indicates whether the experiment data is derived.

media

Boolean

Indicates whether the experiment includes media content.

annotate

Boolean

Indicates whether the experiment is annotated.

comparable_parameter_group

String

The group of comparable parameters.

experiment_level

String

The level of the experiment.

stage

String

The stage of the experiment.

stage_label

String

The label for the stage of the experiment.

schedule_key

Number

The schedule key for the experiment.

mp_id

Array

List of Mammalian Phenotype (MP) Ontology IDs.

mp_id

Array

List of Mammalian Phenotype (MP) Ontology IDs.

mp_term

Array

List of Mammalian Phenotype (MP) Ontology terms.

mp_term_synonym

Array

List of synonyms for Mammalian Phenotype (MP) Ontology terms.

top_level_mp_id

Array

List of top-level MP Ontology IDs.

top_level_mp_term

Array

List of top-level MP Ontology terms.

top_level_mp_term_synonym

Array

List of synonyms for top-level MP Ontology terms.

intermediate_mp_id

Array

List of intermediate MP Ontology IDs.

intermediate_mp_term

Array

List of intermediate MP Ontology terms.

intermediate_mp_term_synonym

Array

List of synonyms for intermediate MP Ontology terms.

abnormal_mp_id

Array

List of IDs for abnormal MP Ontology terms.

increased_mp_id

Array

List of IDs for increased MP Ontology terms.

decreased_mp_id

Array

List of IDs for decreased MP Ontology terms.

abnormal_mp_term

Array

List of abnormal MP Ontology terms.

increased_mp_term

Array

List of increased MP Ontology terms.

decreased_mp_term

Array

List of decreased MP Ontology terms.

hp_id

Array

List of Human Phenotype Ontology (HPO) IDs.

hp_term

Array

List of Human Phenotype Ontology (HPO) terms.

inferred_ma_id

String

The inferred Mouse Anatomy (MA) ID.

inferred_selected_top_level_ma_id

String

The inferred selected top-level Mouse Anatomy (MA) ID.

inferred_selected_top_level_ma_term

String

The inferred selected top-level Mouse Anatomy (MA) term.

ma_id

String

The Mouse Anatomy (MA) ID.

ma_term

String

The Mouse Anatomy (MA) term.

ma_term_synonym

Array

List of synonyms for the Mouse Anatomy (MA) term.

emap_id

String

The EMAP ID for the embryonic mouse anatomy.

emap_term

String

The EMAP term for the embryonic mouse anatomy.

anatomy_id

String

The anatomy ID.

anatomy_term

String

The anatomy term.

anatomy_term_synonym

Array

List of synonyms for the anatomy term.

embryo_anatomy_id

String

The embryo anatomy ID.

embryo_anatomy_term

String

The embryo anatomy term.

top_level_embryo_anatomy_id

Array

List of top-level embryo anatomy IDs.

top_level_embryo_anatomy_term

Array

List of top-level embryo anatomy terms.

mouse_anatomy_id

String

The mouse anatomy ID.

mouse_anatomy_term

String

The mouse anatomy term.

top_level_mouse_anatomy_id

Array

List of top-level mouse anatomy IDs.

top_level_mouse_anatomy_term

Array

List of top-level mouse anatomy terms.

imits_phenotype_started

Array

List indicating the start of phenotype analysis.

imits_phenotype_complete

Array

List indicating the completion of phenotype analysis.

imits_phenotype_status

Array

List describing the status of phenotype analysis.

2.2. Example Json

HTTP/1.1 200 OK
Content-Type: application/json
Content-Length: 2860

{
  "fully_qualified_name" : "Pipeline",
  "data_type" : "String",
  "version" : 1,
  "parameter_id" : 101,
  "parameter_stable_id" : "PARAM_001",
  "parameter_name" : "Parameter Name Example",
  "parameter_stable_key" : 102,
  "procedure_id" : 201,
  "procedure_stable_id" : "PROC_001",
  "procedure_name" : "Procedure Name Example",
  "procedure_stable_key" : 202,
  "pipeline_id" : 301,
  "pipeline_stable_id" : "PIPE_001",
  "pipeline_name" : "Pipeline Name Example",
  "pipeline_stable_key" : 302,
  "required" : true,
  "observation_type" : "Observation Type Example",
  "mp_terms" : [ "MP:0000001", "MP:0000002" ],
  "description" : "Description Example",
  "unit_x" : "cm",
  "unit_y" : "kg",
  "metadata" : true,
  "increment" : true,
  "categories" : [ "Category 1", "Category 2" ],
  "has_options" : false,
  "derived" : false,
  "media" : true,
  "annotate" : false,
  "comparable_parameter_group" : "Group Example",
  "experiment_level" : "Level Example",
  "stage" : "Stage Example",
  "stage_label" : "Stage Label Example",
  "schedule_key" : 401,
  "mp_id" : [ "MP:0000003", "MP:0000004" ],
  "mp_term" : [ "term1", "term2" ],
  "mp_term_synonym" : [ "synonym1", "synonym2" ],
  "top_level_mp_id" : [ "MP:0000005" ],
  "top_level_mp_term" : [ "top level term" ],
  "top_level_mp_term_synonym" : [ "top level synonym" ],
  "intermediate_mp_id" : [ "MP:0000006" ],
  "intermediate_mp_term" : [ "intermediate term" ],
  "intermediate_mp_term_synonym" : [ "intermediate synonym" ],
  "abnormal_mp_id" : [ "MP:0000007" ],
  "increased_mp_id" : [ "MP:0000008" ],
  "decreased_mp_id" : [ "MP:0000009" ],
  "abnormal_mp_term" : [ "abnormal term" ],
  "increased_mp_term" : [ "increased term" ],
  "decreased_mp_term" : [ "decreased term" ],
  "hp_id" : [ "HP:0000001", "HP:0000002" ],
  "hp_term" : [ "HP term 1", "HP term 2" ],
  "inferred_ma_id" : "MA:0000001",
  "inferred_selected_top_level_ma_id" : "MA:0000002",
  "inferred_selected_top_level_ma_term" : "top level MA term",
  "ma_id" : "MA:0000003",
  "ma_term" : "MA term",
  "ma_term_synonym" : [ "MA synonym 1", "MA synonym 2" ],
  "emap_id" : "EMAP:0000001",
  "emap_term" : "EMAP term",
  "anatomy_id" : "A:0000001",
  "anatomy_term" : "anatomy term",
  "anatomy_term_synonym" : [ "anatomy synonym" ],
  "embryo_anatomy_id" : "E:0000001",
  "embryo_anatomy_term" : "embryo anatomy term",
  "top_level_embryo_anatomy_id" : [ "E:0000002" ],
  "top_level_embryo_anatomy_term" : [ "top level embryo anatomy term" ],
  "mouse_anatomy_id" : "M:0000001",
  "mouse_anatomy_term" : "mouse anatomy term",
  "top_level_mouse_anatomy_id" : [ "M:0000002" ],
  "top_level_mouse_anatomy_term" : [ "top level mouse anatomy term" ],
  "imits_phenotype_started" : [ "started1", "started2" ],
  "imits_phenotype_complete" : [ "complete1", "complete2" ],
  "imits_phenotype_status" : [ "status1", "status2" ]
}

3. Latest updates

  • 2024-04-15: Documentation Added