2. mp
2.1. Fields
| Path | Type | Description |
|---|---|---|
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A list of general text related to the document. |
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Suggestions for auto-complete features. |
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A mix of synonyms and quality factors for search optimization. |
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JSON representation of search terms. |
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JSON representation of child elements related to the document. |
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An identifier for a scroll node, possibly used in UI elements. |
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The count of male gene variants. |
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The count of female gene variants. |
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The total count of gene variants. |
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The unique identifier for the MP term. |
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The name of the MP term. |
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The definition of the MP term. |
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A list of synonyms for the MP term. |
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Alternative identifiers for MP terms. |
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Identifiers for child MP terms. |
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Names of child MP terms. |
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Identifiers for parent MP terms. |
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Names of parent MP terms. |
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Identifiers for intermediate MP terms. |
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Names of intermediate MP terms. |
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Identifiers for top-level MP terms. |
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Names of top-level MP terms. |
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Synonyms for top-level MP terms. |
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Unique identifiers for top-level MP terms. |
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A list of Human Phenotype Ontology (HPO) identifiers related to the gene. |
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Names of the human phenotypes associated with the HPO identifiers. |
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Synonyms for the HPO terms. |
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The type of data contained in the document. |
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A list of inferred Mouse Anatomy (MA) term identifiers. |
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Names of the inferred MA terms. |
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Identifiers for intermediate MA terms that are inferred. |
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Names of the inferred intermediate MA terms. |
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Identifiers for selected top-level MA terms that are inferred. |
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Names of the inferred selected top-level MA terms. |
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A list of Gene Ontology (GO) identifiers related to the gene. |
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A list of p-values associated with the statistical analysis of the gene. |
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A list of Mouse Genome Informatics (MGI) accession identifiers. |
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Symbols representing the gene markers. |
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The accession ID for the gene marker. |
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The number of phenotype calls made for the gene. |
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Pre-QC gene identifiers. |
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Full names of the gene markers. |
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Synonyms for the gene markers. |
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Types of gene markers. |
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Symbols for human genes that are orthologous to the mouse gene. |
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Statuses related to the gene. |
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Information on whether phenotyping has started for the gene, by center. |
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Information on whether phenotyping is complete for the gene, by center. |
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The phenotyping status for the gene, by center. |
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The latest centers to produce the gene. |
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The latest centers to phenotype the gene. |
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The latest phenotyping statuses for the gene. |
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Legacy phenotype status for the gene. |
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Names of alleles for the gene. |
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Indicates if embryo data is available for the gene. |
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Types of data or entities related to the gene. |
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Identifiers for diseases related to the gene. |
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Sources of the disease information. |
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Names of the diseases related to the gene. |
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Alternative names or identifiers for the diseases. |
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Classification of the diseases related to the gene. |
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Indicates if the disease-gene association was curated by humans. |
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Indicates if the disease-gene association was curated based on mouse models. |
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Indicates if the disease-gene association is predicted by MGI. |
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Indicates if the disease-gene association is predicted by IMPC. |
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Indicates if the prediction by MGI involves known genes. |
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Indicates if the prediction by IMPC involves known genes. |
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Indicates if there are novel predictions by MGI within a specific locus. |
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Indicates if there are novel predictions by IMPC within a specific locus. |
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A list of annotation term identifiers. |
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Names corresponding to the annotation term identifiers. |
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A list of names related to the entity. |
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A list of accession numbers related to the entity. |
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A list of experiment names related to the entity. |
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File path for the large thumbnail image. |
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File path for the small thumbnail image. |
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A list of symbols related to the entity. |
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A list of Sanger symbols related to the entity. |
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A list of gene names. |
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A list of subtypes for the entity. |
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A list of synonyms for the gene. |
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A list of expanded experiment names related to the entity. |
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A list of gene symbols. |
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A list indicating if the entity is at the top level. |
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A list of allele symbols. |
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A list of allele identifiers. |
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A list of strain names. |
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A list of strain accession IDs. |
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A list of pipeline names. |
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A list of pipeline stable identifiers. |
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A list of pipeline stable keys. |
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A list of procedure names. |
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A list of procedure stable identifiers. |
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A list of procedure stable keys. |
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A list of parameter names. |
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A list of parameter stable identifiers. |
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A list of parameter stable keys. |
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A catchall fifeld containing all searchable text fields. |
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Fields intended for use in auto-suggestion features. |
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Fields that mix synonyms and quality factors for search optimization. |
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JSON representation of search terms for ontology browser. |
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JSON representation of child terms for ontology browser. |
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Identifier for scrolling functionality in UI components. |
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Count of male variants of the gene. |
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Count of female variants of the gene. |
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Total count of gene variants. |
2.2. Example Json
HTTP/1.1 200 OK
Content-Type: application/json
Content-Length: 4847
{
"mp_id" : "MP:0000001",
"mp_term" : "example MP term",
"mp_definition" : "An example definition of the MP term.",
"mp_term_synonym" : [ "synonym1", "synonym2" ],
"alt_mp_id" : [ "MP:0000002", "MP:0000003" ],
"child_mp_id" : [ "MP:0000004" ],
"child_mp_term" : [ "child term" ],
"parent_mp_id" : [ "MP:0000005" ],
"parent_mp_term" : [ "parent term" ],
"intermediate_mp_id" : [ "MP:0000006" ],
"intermediate_mp_term" : [ "intermediate term" ],
"top_level_mp_id" : [ "MP:0000007" ],
"top_level_mp_term" : [ "top level term" ],
"top_level_mp_term_synonym" : [ "top level synonym" ],
"top_level_mp_term_id" : [ "MP:0000008" ],
"hp_id" : [ "HP:0000001" ],
"hp_term" : [ "example HP term" ],
"hp_term_synonym" : [ "HP synonym1", "HP synonym2" ],
"data_type" : "example data type",
"inferred_ma_id" : [ "MA:0000001" ],
"inferred_ma_term" : [ "inferred MA term" ],
"inferred_intermediate_ma_id" : [ "MA:0000002" ],
"inferred_intermediate_ma_term" : [ "intermediate MA term" ],
"inferred_selected_top_level_ma_id" : [ "MA:0000003" ],
"inferred_selected_top_level_ma_term" : [ "selected top level MA term" ],
"go_id" : [ "GO:0000001" ],
"p_value" : [ 0.01, 0.05 ],
"mgi_accession_id" : [ "MGI:0000001" ],
"marker_symbol" : [ "Gene1", "Gene2" ],
"marker_accession_id" : "MGI:0000002",
"pheno_calls" : 42,
"preqc_gene_id" : [ "Gene3", "Gene4" ],
"marker_name" : [ "Gene name 1", "Gene name 2" ],
"marker_synonym" : [ "Gene synonym 1", "Gene synonym 2" ],
"marker_type" : [ "type 1", "type 2" ],
"human_gene_symbol" : [ "HumanGene1", "HumanGene2" ],
"status" : [ "status1", "status2" ],
"imits_phenotype_started" : [ "started1", "started2" ],
"imits_phenotype_complete" : [ "complete1", "complete2" ],
"imits_phenotype_status" : [ "status1", "status2" ],
"latest_production_centre" : [ "centre1", "centre2" ],
"latest_phenotyping_centre" : [ "centre3", "centre4" ],
"latest_phenotype_status" : [ "status3", "status4" ],
"legacy_phenotype_status" : 1,
"allele_name" : [ "Allele1" ],
"embryo_data_available" : true,
"type" : [ "type3", "type4" ],
"disease_id" : [ "Disease1", "Disease2" ],
"disease_source" : [ "source1", "source2" ],
"disease_term" : [ "disease term 1", "disease term 2" ],
"disease_alts" : [ "alt1", "alt2" ],
"disease_classes" : [ "class1", "class2" ],
"human_curated" : [ false, true ],
"mouse_curated" : [ true, false ],
"mgi_predicted" : [ false ],
"impc_predicted" : [ true ],
"mgi_predicted_known_gene" : [ true ],
"impc_predicted_known_gene" : [ false ],
"mgi_novel_predicted_in_locus" : [ true ],
"impc_novel_predicted_in_locus" : [ false ],
"annotation_term_id" : [ "Term1", "Term2" ],
"annotation_term_name" : [ "Annotation term name 1", "Annotation term name 2" ],
"name" : [ "name1", "name2" ],
"accession" : [ "Accession1", "Accession2" ],
"exp_name" : [ "Exp name 1", "Exp name 2" ],
"large_thumbnail_file_path" : "/path/to/large/thumbnail",
"small_thumbnail_file_path" : "/path/to/small/thumbnail",
"symbol" : [ "Symbol1", "Symbol2" ],
"sanger_symbol" : [ "Sanger1", "Sanger2" ],
"gene_name" : [ "Gene name 3", "Gene name 4" ],
"subtype" : [ "subtype1", "subtype2" ],
"gene_synonyms" : [ "Gene synonym 3", "Gene synonym 4" ],
"exp_name_exp" : [ "Exp name 3", "Exp name 4" ],
"symbol_gene" : [ "SymbolGene1", "SymbolGene2" ],
"top_level" : [ "TopLevel1", "TopLevel2" ],
"allele_symbol" : [ "Allele symbol 1", "Allele symbol 2" ],
"allele_id" : [ "Allele ID 1", "Allele ID 2" ],
"strain_name" : [ "Strain name 1", "Strain name 2" ],
"strain_accession_id" : [ "Strain accession ID 1", "Strain accession ID 2" ],
"pipeline_name" : [ "Pipeline name 1", "Pipeline name 2" ],
"pipeline_stable_id" : [ "Pipeline stable ID 1", "Pipeline stable ID 2" ],
"pipeline_stable_key" : [ "Pipeline stable key 1", "Pipeline stable key 2" ],
"procedure_name" : [ "Procedure name 1", "Procedure name 2" ],
"procedure_stable_id" : [ "Procedure stable ID 1", "Procedure stable ID 2" ],
"procedure_stable_key" : [ "Procedure stable key 1", "Procedure stable key 2" ],
"parameter_name" : [ "Parameter name 1", "Parameter name 2" ],
"parameter_stable_id" : [ "Parameter stable ID 1", "Parameter stable ID 2" ],
"parameter_stable_key" : [ "Parameter stable key 1", "Parameter stable key 2" ],
"text" : [ "Example text 1", "Example text 2" ],
"auto_suggest" : [ "Suggest 1", "Suggest 2" ],
"mix_syn_qf" : [ "Mix synonym 1", "Mix synonym 2" ],
"search_term_json" : "{\"searchTerm\":\"Example search term\"}",
"children_json" : "[{\"childId\":\"C1\", \"childName\":\"Child 1\"}, {\"childId\":\"C2\", \"childName\":\"Child 2\"}]",
"scroll_node" : "ScrollNodeExample",
"gene_variant_male_count" : 100,
"gene_variant_female_count" : 150,
"gene_variant_count" : 250
}3. Latest updates
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2024-04-15: Documentation Added