1. Introduction

2. genotype-phenotype

2.1. Fields

Path Type Description

doc_id

String

The unique identifier for the document.

ontology_db_id

Number

The database ID associated with the ontology entry.

assertion_type

String

The type of assertion made in the document.

assertion_type_id

String

The unique identifier for the assertion type.

mpath_term_id

String

The identifier for the pathology (MPATH) term.

mpath_term_name

String

The name of the pathology (MPATH) term.

anatomy_term_id

Array

List of anatomy term identifiers.

anatomy_term_name

Array

List of anatomy term names.

intermediate_anatomy_term_id

Array

List of intermediate anatomy term identifiers.

intermediate_anatomy_term_name

Array

List of intermediate anatomy term names.

top_level_anatomy_term_id

Array

List of top-level anatomy term identifiers.

top_level_anatomy_term_name

Array

List of top-level anatomy term names.

mp_term_id

String

The identifier for the mouse phenotype (MP) term.

mp_term_name

String

The name of the mouse phenotype (MP) term.

alt_mp_term_id

Array

List of alternative mouse phenotype (MP) term identifiers.

top_level_mp_term_id

Array

List of top-level mouse phenotype (MP) term identifiers.

top_level_mp_term_name

Array

List of top-level mouse phenotype (MP) term names.

intermediate_mp_term_id

Array

List of intermediate mouse phenotype (MP) term identifiers.

intermediate_mp_term_name

Array

List of intermediate mouse phenotype (MP) term names.

marker_symbol

String

The symbol for the genetic marker.

marker_accession_id

String

The accession ID for the genetic marker.

colony_id

String

The identifier for the colony.

allele_name

String

The name of the allele.

allele_symbol

String

The symbol of the allele.

allele_accession_id

String

The accession ID of the allele.

strain_name

String

The name of the strain.

strain_accession_id

String

The accession ID of the strain.

phenotyping_center

String

The name of the phenotyping center.

project_external_id

String

The external ID of the project.

project_name

Array

List of names for the project.

project_fullname

String

The full name of the project.

resource_name

String

The name of the resource.

resource_fullname

String

The full name of the resource.

sex

String

The sex of the subject.

zygosity

String

The zygosity of the subject.

pipeline_name

String

The name of the pipeline.

pipeline_stable_id

String

The stable ID of the pipeline.

pipeline_stable_key

String

The stable key of the pipeline.

procedure_name

String

The name of the procedure.

procedure_stable_id

Array

List of stable IDs for the procedures.

procedure_stable_key

Array

List of stable keys for the procedures.

parameter_name

String

The name of the parameter.

parameter_stable_id

String

The stable ID of the parameter.

parameter_stable_key

Array

List of stable keys for the parameter.

statistical_method

String

The statistical method used.

percentage_change

String

The percentage change observed.

p_value

Number

The p-value resulting from statistical tests.

effect_size

Number

The effect size measured.

external_id

String

The external identifier for the document.

life_stage_acc

String

The accession code for the life stage.

life_stage_name

String

The name of the life stage.

2.2. Example Json

HTTP/1.1 200 OK
Content-Type: application/json
Content-Length: 2458

{
  "doc_id" : "DOC001",
  "ontology_db_id" : 123456,
  "assertion_type" : "Assertion Type Example",
  "assertion_type_id" : "ATID001",
  "mpath_term_id" : "MPATH:0000001",
  "mpath_term_name" : "Mpath Term Name Example",
  "anatomy_term_id" : [ "ATID001", "ATID002" ],
  "anatomy_term_name" : [ "Anatomy Term 1", "Anatomy Term 2" ],
  "intermediate_anatomy_term_id" : [ "IATID001", "IATID002" ],
  "intermediate_anatomy_term_name" : [ "Intermediate Anatomy Term 1", "Intermediate Anatomy Term 2" ],
  "top_level_anatomy_term_id" : [ "TLATID001", "TLATID002" ],
  "top_level_anatomy_term_name" : [ "Top Level Anatomy Term 1", "Top Level Anatomy Term 2" ],
  "mp_term_id" : "MP:0000001",
  "mp_term_name" : "MP Term Name Example",
  "alt_mp_term_id" : [ "AMPID001", "AMPID002" ],
  "top_level_mp_term_id" : [ "TLMPID001", "TLMPID002" ],
  "top_level_mp_term_name" : [ "Top Level MP Term 1", "Top Level MP Term 2" ],
  "intermediate_mp_term_id" : [ "IMPID001", "IMPID002" ],
  "intermediate_mp_term_name" : [ "Intermediate MP Term 1", "Intermediate MP Term 2" ],
  "marker_symbol" : "MkSym",
  "marker_accession_id" : "MARK:000001",
  "colony_id" : "Colony001",
  "allele_name" : "Allele Name Example",
  "allele_symbol" : "AlleleSym",
  "allele_accession_id" : "Allele:000001",
  "strain_name" : "Strain Name Example",
  "strain_accession_id" : "Strain:000001",
  "phenotyping_center" : "Phenotyping Center Example",
  "project_external_id" : "ProjectExtID001",
  "project_name" : [ "Project Name 1", "Project Name 2" ],
  "project_fullname" : "Project Fullname Example",
  "resource_name" : "Resource Name Example",
  "resource_fullname" : "Resource Fullname Example",
  "sex" : "Male",
  "zygosity" : "Homozygote",
  "pipeline_name" : "Pipeline Name Example",
  "pipeline_stable_id" : "PipelineStableID001",
  "pipeline_stable_key" : "PipelineStableKey001",
  "procedure_name" : "Procedure Name Example",
  "procedure_stable_id" : [ "ProcStableID001", "ProcStableID002" ],
  "procedure_stable_key" : [ "ProcStableKey001", "ProcStableKey002" ],
  "parameter_name" : "Parameter Name Example",
  "parameter_stable_id" : "ParamStableID001",
  "parameter_stable_key" : [ "ParamStableKey001", "ParamStableKey002" ],
  "statistical_method" : "Statistical Method Example",
  "percentage_change" : "10%",
  "p_value" : 0.05,
  "effect_size" : 1.2,
  "external_id" : "ExternalID001",
  "life_stage_acc" : "LS:000001",
  "life_stage_name" : "Life Stage Name Example"
}

3. Latest updates

  • 2024-04-15: Documentation Added