1. Introduction

2. experiment

2.1. Fields

Path Type Description

id

String

The unique identifier for the experiment.

observation_id

String

The observation’s unique identifier.

specimen_id

String

The specimen’s unique identifier.

phenotyping_center_id

Number

The unique identifier of the phenotyping center.

phenotyping_center

String

The name of the phenotyping center.

production_center_id

Number

The unique identifier of the production center.

production_center

String

The name of the production center.

specimen_project_id

Number

The unique identifier for the specimen project.

specimen_project_name

String

The name of the specimen project.

gene_accession_id

String

The accession ID of the gene.

gene_symbol

String

The symbol of the gene.

allele_accession_id

String

The accession ID of the allele.

allele_symbol

String

The symbol of the allele.

zygosity

String

The zygosity of the specimen.

sex

String

The sex of the specimen.

biological_model_id

Number

The unique identifier for the biological model.

biological_sample_id

Number

The unique identifier for the biological sample.

biological_sample_group

String

The group of the biological sample.

strain_accession_id

String

The accession ID of the strain.

strain_name

String

The name of the strain.

genetic_background

String

The genetic background of the specimen.

allelic_composition

String

The allelic composition of the specimen.

colony_id

String

The unique identifier of the colony.

litter_id

String

The unique identifier of the litter.

date_of_birth

String

The date of birth of the specimen.

external_sample_id

String

The external sample identifier.

life_stage_name

String

The name of the life stage of the specimen.

life_stage_acc

String

The accession code for the life stage.

datasource_id

Number

The unique identifier for the data source.

datasource_name

String

The name of the data source.

project_id

Number

The unique identifier for the project.

project_name

String

The name of the project.

pipeline_id

Number

The unique identifier for the pipeline.

pipeline_name

String

The name of the pipeline.

pipeline_stable_id

String

The stable identifier for the pipeline.

procedure_id

Number

The unique identifier for the procedure.

procedure_name

String

The name of the procedure.

procedure_stable_id

String

The stable identifier for the procedure.

procedure_group

String

The group of the procedure.

parameter_id

Number

The unique identifier for the parameter.

parameter_name

String

The name of the parameter.

parameter_stable_id

String

The stable identifier for the parameter.

procedure_sequence_id

String

The sequence identifier for the procedure.

experiment_id

String

The unique identifier for the experiment.

observation_type

String

The type of observation.

data_type

String

Defines the general category or type of the data, such as gene, allele, etc.

date_of_experiment

String

The date when the experiment was conducted.

weight_parameter_stable_id

String

The stable identifier for the weight parameter.

weight_date

String

The date corresponding to the weight measurement.

weight_days_old

Number

The age in days of the specimen at the time of the weight measurement.

weight

Number

The weight of the specimen.

data_point

Number

A specific data point from the experiment.

order_index

Number

The index ordering of the data point.

dimension

String

The dimension to which the data point relates.

time_point

String

The specific time point at which the data was collected.

discrete_point

Number

A discrete point measurement from the experiment.

category

String

The category of the data point.

raw_category

String

The raw category data before processing.

metadata

Array

A list of metadata entries associated with the experiment.

anatomy_id

Array

A list of anatomy IDs relevant to the experiment.

anatomy_term

Array

A list of anatomy terms relevant to the experiment.

anatomy_id_term

Array

A list combining anatomy IDs and terms.

anatomy_term_synonym

Array

A list of synonyms for the anatomy terms.

top_level_anatomy_id

Array

A list of top-level anatomy IDs.

top_level_anatomy_term

Array

A list of top-level anatomy terms.

top_level_anatomy_term_synonym

Array

A list of synonyms for the top-level anatomy terms.

selected_top_level_anatomy_id

Array

A list of selected top-level anatomy IDs.

selected_top_level_anatomy_term

Array

A list of selected top-level anatomy terms.

selected_top_level_anatomy_term_synonym

Array

A list of synonyms for the selected top-level anatomy terms.

intermediate_anatomy_id

Array

A list of intermediate anatomy IDs.

intermediate_anatomy_term

Array

A list of intermediate anatomy terms.

intermediate_anatomy_term_synonym

Array

A list of synonyms for the intermediate anatomy terms.

parent_anatomy_id

Array

A list of parent anatomy IDs.

parent_anatomy_term

Array

A list of parent anatomy terms.

parent_anatomy_term_synonym

Array

A list of synonyms for the parent anatomy terms.

child_anatomy_id

Array

A list of child anatomy IDs.

child_anatomy_term

Array

A list of child anatomy terms.

child_anatomy_term_synonym

Array

A list of synonyms for the child anatomy terms.

download_file_path

String

The file path for downloading associated data.

image_link

String

A link to an associated image.

file_type

String

The file type of the associated data.

increment_value

String

An increment value associated with the data.

parameter_association_stable_id

Array

A list of stable IDs for parameter associations.

parameter_association_sequence_id

Array

A list of sequence IDs for parameter associations.

parameter_association_dim_id

Array

A list of dimension IDs for parameter associations.

parameter_association_name

Array

A list of names for parameter associations.

parameter_association_value

Array

A list of values for parameter associations.

developmental_stage_acc

String

The accession code for the developmental stage.

developmental_stage_name

String

The name of the developmental stage.

text_value

String

A text value associated with the experiment.

sub_term_id

Array

A list of sub-term IDs.

sub_term_name

Array

A list of sub-term names.

sub_term_description

Array

A list of descriptions for the sub-terms.

age_in_days

Number

The age in days of the specimen at the time of the experiment.

age_in_weeks

Number

The age in weeks of the specimen at the time of the experiment.

metadata_group

String

A grouping identifier for the metadata, organizing it into logical groups.

experiment_source_id

String

The unique identifier for the source of the experiment data.

2.2. Example Json

HTTP/1.1 200 OK
Content-Type: application/json
Content-Length: 4188

{
  "id" : "1",
  "observation_id" : "OBS0001",
  "specimen_id" : "SPEC0001",
  "phenotyping_center_id" : 101,
  "phenotyping_center" : "Pheno Center 1",
  "production_center_id" : 201,
  "production_center" : "Prod Center 2",
  "specimen_project_id" : 301,
  "specimen_project_name" : "Specimen Project 1",
  "gene_accession_id" : "ACC12345",
  "gene_symbol" : "GeneX",
  "allele_accession_id" : "ALLELE123",
  "allele_symbol" : "AlleleX",
  "zygosity" : "Heterozygous",
  "sex" : "Female",
  "biological_model_id" : 401,
  "biological_sample_id" : 501,
  "biological_sample_group" : "Group A",
  "strain_accession_id" : "STRAIN001",
  "strain_name" : "Strain X",
  "genetic_background" : "Background 1",
  "allelic_composition" : "Comp1/Comp2",
  "colony_id" : "Colony001",
  "litter_id" : "Litter001",
  "date_of_birth" : "2022-01-01",
  "external_sample_id" : "External001",
  "life_stage_name" : "Adult",
  "life_stage_acc" : "LS123",
  "datasource_id" : 601,
  "datasource_name" : "DataSource 1",
  "project_id" : 701,
  "project_name" : "Project Y",
  "pipeline_id" : 801,
  "pipeline_name" : "Pipeline Z",
  "pipeline_stable_id" : "PipelineStable001",
  "procedure_id" : 901,
  "procedure_name" : "Procedure 1",
  "procedure_stable_id" : "ProcedureStable001",
  "procedure_group" : "Group 1",
  "parameter_id" : 1001,
  "parameter_name" : "Parameter 1",
  "parameter_stable_id" : "ParamStable001",
  "procedure_sequence_id" : "Seq001",
  "experiment_id" : "Experiment001",
  "observation_type" : "Type 1",
  "data_type" : "DataType 1",
  "experiment_source_id" : "Source001",
  "date_of_experiment" : "2022-06-01",
  "weight_parameter_stable_id" : "WeightParam001",
  "weight_date" : "2022-06-15",
  "weight_days_old" : 45,
  "weight" : 15.5,
  "data_point" : 5.2,
  "order_index" : 1,
  "dimension" : "Dimension 1",
  "time_point" : "Time 1",
  "discrete_point" : 2.2,
  "category" : "Category 1",
  "raw_category" : "Raw Category 1",
  "metadata" : [ "Item 1", "Item 2" ],
  "metadata_group" : "MetadataGroup1",
  "anatomy_id" : [ "Item 1", "Item 2" ],
  "anatomy_term" : [ "Item 1", "Item 2" ],
  "anatomy_id_term" : [ "Item 1", "Item 2" ],
  "anatomy_term_synonym" : [ "Item 1", "Item 2" ],
  "top_level_anatomy_id" : [ "Item 1", "Item 2" ],
  "top_level_anatomy_term" : [ "Item 1", "Item 2" ],
  "top_level_anatomy_term_synonym" : [ "Item 1", "Item 2" ],
  "selected_top_level_anatomy_id" : [ "Item 1", "Item 2" ],
  "selected_top_level_anatomy_term" : [ "Item 1", "Item 2" ],
  "selected_top_level_anatomy_term_synonym" : [ "Term Synonym A", "Term Synonym B" ],
  "intermediate_anatomy_id" : [ "Intermediate ID A", "Intermediate ID B" ],
  "intermediate_anatomy_term" : [ "Intermediate Term A", "Intermediate Term B" ],
  "intermediate_anatomy_term_synonym" : [ "Intermediate Synonym A", "Intermediate Synonym B" ],
  "parent_anatomy_id" : [ "Parent ID A", "Parent ID B" ],
  "parent_anatomy_term" : [ "Parent Term A", "Parent Term B" ],
  "parent_anatomy_term_synonym" : [ "Parent Synonym A", "Parent Synonym B" ],
  "child_anatomy_id" : [ "Child ID A", "Child ID B" ],
  "child_anatomy_term" : [ "Child Term A", "Child Term B" ],
  "child_anatomy_term_synonym" : [ "Child Synonym A", "Child Synonym B" ],
  "download_file_path" : "http://example.com/download/path",
  "image_link" : "http://example.com/image/path",
  "file_type" : "JPEG",
  "increment_value" : "1",
  "parameter_association_stable_id" : [ "Param Assoc Stable ID A", "Param Assoc Stable ID B" ],
  "parameter_association_sequence_id" : [ "Param Assoc Seq ID A", "Param Assoc Seq ID B" ],
  "parameter_association_dim_id" : [ "Param Assoc Dim ID A", "Param Assoc Dim ID B" ],
  "parameter_association_name" : [ "Param Assoc Name A", "Param Assoc Name B" ],
  "parameter_association_value" : [ "Param Assoc Value A", "Param Assoc Value B" ],
  "developmental_stage_acc" : "Dev Stage ACC",
  "developmental_stage_name" : "Dev Stage Name",
  "text_value" : "Some text value",
  "sub_term_id" : [ "Sub Term ID A", "Sub Term ID B" ],
  "sub_term_name" : [ "Sub Term Name A", "Sub Term Name B" ],
  "sub_term_description" : [ "Sub Term Desc A", "Sub Term Desc B" ],
  "age_in_days" : 120,
  "age_in_weeks" : 17
}

3. Latest updates

  • 2024-04-15: Documentation Added