EBI metagenomics

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Project overview (ERP002426)

French Guiana forest soil metagenomic sequencing study

Last updated: 03-Apr-2015

Description

Soil samples have been collected at Trois-Sauts, an isolated settlement in Amazonian National Park. In order to assess anthropogenic impact on microbial communities, a 3km transect has been sampled every 600m in order to generate anthropization gradient, from the village to the forest. Each soil samples DNA has been extracted with MoBio Power Soil Max extraction kit and directly sequenced without any prior amplification with Roche 454 Titanium chemistey

Contact details

Institute:
ECL
Name:
Joseph Nesme
Email:
jnesme@gmail.com

Associated samples

Sample name Sample ID Collection date Source
3000m3 ERS227012 01-Oct-2010 Environmental
3000m2 ERS227011 01-Oct-2010 Environmental
3000m1 ERS227010 01-Oct-2010 Environmental
2400m3 ERS227009 01-Oct-2010 Environmental
2400m2 ERS227008 01-Oct-2010 Environmental
2400m1 ERS227007 01-Oct-2010 Environmental
1800m3 ERS227006 01-Oct-2010 Environmental
1800m2 ERS227005 01-Oct-2010 Environmental
1800m1 ERS227004 01-Oct-2010 Environmental
1200m3 ERS227003 01-Oct-2010 Environmental
1200m2 ERS227002 01-Oct-2010 Environmental
1200m1 ERS227001 01-Oct-2010 Environmental
600m3 ERS227000 01-Oct-2010 Environmental
600m2 ERS226999 01-Oct-2010 Environmental
600m1 ERS226998 01-Oct-2010 Environmental
0m3 ERS226997 01-Oct-2010 Environmental
0m2 ERS226996 01-Oct-2010 Environmental
0m1 ERS226995 01-Oct-2010 Environmental

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