{"links":{"first":"https://www.ebi.ac.uk/metagenomics/api/v1/studies?ordering=-study_id&page=1","last":"https://www.ebi.ac.uk/metagenomics/api/v1/studies?ordering=-study_id&page=208","next":"https://www.ebi.ac.uk/metagenomics/api/v1/studies?ordering=-study_id&page=2","prev":null},"data":[{"type":"studies","id":"MGYS00006860","attributes":{"accession":"MGYS00006860","samples-count":5,"bioproject":"PRJEB102572","is-private":false,"last-update":"2025-12-02T14:29:59","secondary-accession":"ERP183963","centre-name":"EMG","public-release-date":null,"study-abstract":"The Third Party Annotation (TPA) assembly was derived from the primary data set PRJNA1303850","study-name":"Metagenome assembly of PRJNA1303850 data set (Ecological Restoration and the Dominant Effects of Rhizosphere Microbes in Carbon Cycling in Mine Areas)","data-origination":"SUBMITTED"},"relationships":{"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006860/analyses"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006860/publications"}},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006860/samples"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006860/biomes"},"data":[{"type":"biomes","id":"root:Host-associated:Plants:Rhizosphere","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Plants:Rhizosphere"}}]},"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006860/downloads"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006860/geocoordinates"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006860"}},{"type":"studies","id":"MGYS00006855","attributes":{"accession":"MGYS00006855","samples-count":30,"bioproject":"PRJEB50625","is-private":false,"last-update":"2025-09-29T15:33:02","secondary-accession":"ERP135226","centre-name":"INRA-META","public-release-date":null,"study-abstract":"Characterization of the rabbit (Oryctolagus cuniculus) fecal metagenome by deep shotgun sequencing.\nThe MicroReset Project was funded by the Animal Health program of the Carnot Institute in France.\nSequencing data was generated by Genotoul (Toulouse, France).","study-name":"MicroReset rabbit","data-origination":"SUBMITTED"},"relationships":{"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006855/analyses"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006855/publications"}},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006855/samples"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006855/biomes"},"data":[{"type":"biomes","id":"root:Host-associated:Mammals:Digestive system:Fecal","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Mammals:Digestive%20system:Fecal"}}]},"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006855/downloads"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006855/geocoordinates"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006855"}},{"type":"studies","id":"MGYS00006849","attributes":{"accession":"MGYS00006849","samples-count":6,"bioproject":"PRJEB82502","is-private":false,"last-update":"2025-08-26T10:46:15","secondary-accession":"ERP166188","centre-name":"EMG","public-release-date":null,"study-abstract":"The Third Party Annotation (TPA) assembly was derived from the primary data set PRJNA754443","study-name":"Metagenome assembly of PRJNA754443 data set (Comparison of short-read and long-read amplicon and metagenomic sequencing data from clinical microbiome samples)","data-origination":"SUBMITTED"},"relationships":{"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006849/analyses"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006849/publications"}},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006849/samples"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006849/biomes"},"data":[{"type":"biomes","id":"root:Host-associated:Human:Digestive system:Large intestine:Fecal","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Human:Digestive%20system:Large%20intestine:Fecal"}}]},"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006849/downloads"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006849/geocoordinates"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006849"}},{"type":"studies","id":"MGYS00006848","attributes":{"accession":"MGYS00006848","samples-count":7,"bioproject":"PRJEB75476","is-private":false,"last-update":"2025-08-26T14:50:09","secondary-accession":"ERP160052","centre-name":"EMG","public-release-date":null,"study-abstract":"The Third Party Annotation (TPA)  assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA553005, and was assembled with metaspades v3.15.3. This project includes samples from the following biomes: root:Environmental:Aquatic:Marine:Sediment.","study-name":"EMG produced TPA metagenomics assembly of PRJNA553005 data set (Metagenomic views of microbial dynamics influenced by hydrocarbon seepages in sediments of Gulf of Mexico).","data-origination":"SUBMITTED"},"relationships":{"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006848/analyses"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006848/publications"}},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006848/samples"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006848/biomes"},"data":[{"type":"biomes","id":"root:Environmental:Aquatic:Marine:Sediment","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine:Sediment"}}]},"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006848/downloads"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006848/geocoordinates"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006848"}},{"type":"studies","id":"MGYS00006847","attributes":{"accession":"MGYS00006847","samples-count":42,"bioproject":"PRJEB74222","is-private":false,"last-update":"2025-08-27T07:10:47","secondary-accession":"ERP158914","centre-name":"EMG","public-release-date":null,"study-abstract":"The Third Party Annotation (TPA)  assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA944553, and was assembled with metaspades v3.15.3. This project includes samples from the following biomes: root:Host-associated:Mammals:Digestive system:Fecal.","study-name":"EMG produced TPA metagenomics assembly of PRJNA944553 data set (Metagenomic samples of cat and human feces Metagenome).","data-origination":"SUBMITTED"},"relationships":{"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006847/analyses"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006847/publications"}},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006847/samples"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006847/biomes"},"data":[{"type":"biomes","id":"root:Host-associated:Mammals:Digestive system:Fecal","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Mammals:Digestive%20system:Fecal"}}]},"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006847/downloads"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006847/geocoordinates"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006847"}},{"type":"studies","id":"MGYS00006846","attributes":{"accession":"MGYS00006846","samples-count":3,"bioproject":"PRJEB92452","is-private":false,"last-update":"2025-11-05T16:34:28","secondary-accession":"ERP175331","centre-name":"T C","public-release-date":null,"study-abstract":"Analise de biodiversidade de areas contaminadas por metais pesados ","study-name":"Analise de metais pesado de rios","data-origination":"SUBMITTED"},"relationships":{"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006846/analyses"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006846/publications"}},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006846/samples"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006846/biomes"},"data":[{"type":"biomes","id":"root:Environmental:Terrestrial:Soil:Contaminated","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Terrestrial:Soil:Contaminated"}}]},"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006846/downloads"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006846/geocoordinates"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006846"}},{"type":"studies","id":"MGYS00006845","attributes":{"accession":"MGYS00006845","samples-count":1,"bioproject":"PRJEB90651","is-private":false,"last-update":"2025-08-23T12:50:57","secondary-accession":"ERP173656","centre-name":"EMG","public-release-date":null,"study-abstract":"The Third Party Annotation (TPA) assembly was derived from the primary data set PRJNA923753","study-name":"Metagenome assembly of PRJNA923753 data set (Felis_catus_WGS_metagenome)","data-origination":"SUBMITTED"},"relationships":{"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006845/analyses"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006845/publications"}},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006845/samples"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006845/biomes"},"data":[{"type":"biomes","id":"root:Host-associated:Mammals:Digestive system:Fecal","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Mammals:Digestive%20system:Fecal"}}]},"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006845/downloads"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006845/geocoordinates"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006845"}},{"type":"studies","id":"MGYS00006844","attributes":{"accession":"MGYS00006844","samples-count":12,"bioproject":"PRJEB94195","is-private":false,"last-update":"2025-08-23T15:16:16","secondary-accession":"ERP177070","centre-name":"EMG","public-release-date":null,"study-abstract":"The Third Party Annotation (TPA) assembly was derived from the primary data set PRJEB10391","study-name":"Metagenome assembly of PRJEB10391 data set (Impact of ciprofloxacin pertubation on the intestinal resistome and microbiota in two healthy volunteers)","data-origination":"SUBMITTED"},"relationships":{"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006844/analyses"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006844/publications"}},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006844/samples"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006844/biomes"},"data":[{"type":"biomes","id":"root:Host-associated:Human:Digestive system:Large intestine:Fecal","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Human:Digestive%20system:Large%20intestine:Fecal"}}]},"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006844/downloads"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006844/geocoordinates"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006844"}},{"type":"studies","id":"MGYS00006843","attributes":{"accession":"MGYS00006843","samples-count":30,"bioproject":"PRJEB90624","is-private":false,"last-update":"2025-08-25T17:14:14","secondary-accession":"ERP173629","centre-name":"EMG","public-release-date":null,"study-abstract":"The Third Party Annotation (TPA) assembly was derived from the primary data set PRJEB50625","study-name":"Metagenome assembly of PRJEB50625 data set (MicroReset rabbit)","data-origination":"SUBMITTED"},"relationships":{"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006843/analyses"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006843/publications"}},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006843/samples"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006843/biomes"},"data":[{"type":"biomes","id":"root:Host-associated:Mammals:Digestive system:Fecal","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Mammals:Digestive%20system:Fecal"}}]},"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006843/downloads"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006843/geocoordinates"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006843"}},{"type":"studies","id":"MGYS00006826","attributes":{"accession":"MGYS00006826","samples-count":8,"bioproject":"PRJEB90306","is-private":false,"last-update":"2025-07-23T12:32:32","secondary-accession":"ERP173321","centre-name":"EMG","public-release-date":null,"study-abstract":"The Third Party Annotation (TPA) assembly was derived from the primary data set PRJNA908260","study-name":"Metagenome assembly of PRJNA908260 data set (Domestic cat stool sample)","data-origination":"SUBMITTED"},"relationships":{"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006826/analyses"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006826/publications"}},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006826/samples"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006826/biomes"},"data":[{"type":"biomes","id":"root:Host-associated:Mammals:Digestive system:Fecal","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Mammals:Digestive%20system:Fecal"}}]},"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006826/downloads"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006826/geocoordinates"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006826"}},{"type":"studies","id":"MGYS00006825","attributes":{"accession":"MGYS00006825","samples-count":197,"bioproject":"PRJEB75554","is-private":false,"last-update":"2025-07-23T16:06:11","secondary-accession":"ERP160132","centre-name":"EMG","public-release-date":null,"study-abstract":"The Third Party Annotation (TPA)  assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA715245, and was assembled with metaspades v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Large intestine.","study-name":"EMG produced TPA metagenomics assembly of PRJNA715245 data set (human gut metagenome Metagenome).","data-origination":"SUBMITTED"},"relationships":{"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006825/analyses"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006825/publications"}},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006825/samples"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006825/biomes"},"data":[{"type":"biomes","id":"root:Host-associated:Human:Digestive system:Large intestine","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Human:Digestive%20system:Large%20intestine"}}]},"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006825/downloads"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006825/geocoordinates"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006825"}},{"type":"studies","id":"MGYS00006824","attributes":{"accession":"MGYS00006824","samples-count":40,"bioproject":"PRJEB62821","is-private":false,"last-update":"2025-07-07T23:05:46","secondary-accession":"ERP147941","centre-name":"EMG","public-release-date":null,"study-abstract":"The Third Party Annotation (TPA)  assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB52094, and was assembled with metaspades v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Large intestine:Fecal.","study-name":"EMG produced TPA metagenomics assembly of PRJEB52094 data set (In this study, we performed shotgun metagenomics sequencing on fecal DNA collected from 16 control subjects and 24 hemodialysis patients.).","data-origination":"SUBMITTED"},"relationships":{"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006824/analyses"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006824/publications"}},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006824/samples"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006824/biomes"},"data":[{"type":"biomes","id":"root:Host-associated:Human:Digestive system:Large intestine:Fecal","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Human:Digestive%20system:Large%20intestine:Fecal"}}]},"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006824/downloads"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006824/geocoordinates"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006824"}},{"type":"studies","id":"MGYS00006823","attributes":{"accession":"MGYS00006823","samples-count":1,"bioproject":"PRJEB63401","is-private":false,"last-update":"2025-07-07T23:05:47","secondary-accession":"ERP148566","centre-name":"EMG","public-release-date":null,"study-abstract":"The Third Party Annotation (TPA)  assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA693652, and was assembled with metaspades v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Large intestine:Fecal.","study-name":"EMG produced TPA metagenomics assembly of PRJNA693652 data set (The intestinal bacteriomes and viromes of pationts with recurrent CDI).","data-origination":"SUBMITTED"},"relationships":{"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006823/analyses"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006823/publications"}},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006823/samples"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006823/biomes"},"data":[{"type":"biomes","id":"root:Host-associated:Human:Digestive system:Large intestine:Fecal","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Human:Digestive%20system:Large%20intestine:Fecal"}}]},"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006823/downloads"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006823/geocoordinates"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006823"}},{"type":"studies","id":"MGYS00006822","attributes":{"accession":"MGYS00006822","samples-count":55,"bioproject":"PRJEB63310","is-private":false,"last-update":"2025-07-07T18:12:38","secondary-accession":"ERP148470","centre-name":"EMG","public-release-date":null,"study-abstract":"The Third Party Annotation (TPA)  assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB55713, and was assembled with metaspades v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Large intestine:Fecal.","study-name":"EMG produced TPA metagenomics assembly of PRJEB55713 data set (Child gut microbiome).","data-origination":"SUBMITTED"},"relationships":{"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006822/analyses"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006822/publications"}},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006822/samples"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006822/biomes"},"data":[{"type":"biomes","id":"root:Host-associated:Human:Digestive system:Large intestine:Fecal","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Human:Digestive%20system:Large%20intestine:Fecal"}}]},"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006822/downloads"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006822/geocoordinates"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006822"}},{"type":"studies","id":"MGYS00006821","attributes":{"accession":"MGYS00006821","samples-count":18,"bioproject":"","is-private":false,"last-update":"2025-07-02T14:58:13","secondary-accession":"SRP003237","centre-name":"G2L","public-release-date":null,"study-abstract":"Soil bacteria are important components for nearly all biogeochemical cycles in terrestrial ecosystems and participate in most nutrient transformations in soil. In contrast to the importance of soil bacteria for ecosystem functions, we understand little how different management types affect the soil bacterial community composition. We used pyrosequencing-based analysis of the V2-V3 16S rRNA gene region to identify changes in bacterial diversity and community structure in nine forest and nine grassland soils under six different management types (three replicates each) from the Schwäbische Alb (southwestern Germany). The data set comprised 598,962 sequences that were affiliated to the domain Bacteria. The number of classified sequences per sample ranged from 23,515 to 39,259. The dominant taxonomic groups across all samples (> 1% of all sequences) were Acidobacteria, Alphaproteobacteria, Actinobacteria, Betaproteobacteria, Deltaproteobacteria, Gammaproteobacteria, and Firmicutes. Significant variations in relative abundances of bacterial phyla, including Actinobacteria, Firmicutes, Cyanobacteria, and Alphaproteobacteria, between the land use types forest and grassland were observed. At the genus level, differences were also recorded for the dominant genera Phenylobacter, Polyangium, Bacillus, Kribbella, Agromyces, and Defluviicoccus. The separate analysis of bacterial community composition in forest and grassland soils revealed strong correlations of relative abundances of bacterial groups at different taxonomic levels and soil pH, but little or no relationships to the management type and other soil properties were found. A pH effect was recorded for the Bacteroidetes, Alphaproteobacteria, Betaproteobacteria, Acidobacteria (subgroups 1, 4, 6, 13, 16, 17, and 22), Caulobacterales, and Dyella in forest soils, and for acidobacterial subgroup 3 and Acetobacteraceae in forest as well as in grassland soils. In addition, soil bacterial community structure showed significant differences between beech and spruce forest soils. Thus, soil pH and tree species were the major drivers of bacterial community composition in forest soils.","study-name":"16S rRNA analysis of bacterial communities of forest and grassland sites located in the German Biodiversity Exploratory Schwäbische Alb","data-origination":"HARVESTED"},"relationships":{"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006821/analyses"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006821/publications"}},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006821/samples"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006821/biomes"},"data":[{"type":"biomes","id":"root:Environmental:Terrestrial:Soil","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Terrestrial:Soil"}}]},"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006821/downloads"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006821/geocoordinates"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006821"}},{"type":"studies","id":"MGYS00006820","attributes":{"accession":"MGYS00006820","samples-count":30,"bioproject":"PRJNA1275972","is-private":false,"last-update":"2025-06-26T12:55:48","secondary-accession":"SRP591971","centre-name":"BioProject","public-release-date":null,"study-abstract":"Best practices for making shotgun metagenome sequence libraries from ultra-low biomass specimens have yet to be fully resolved. In this study, we address the utility of spiking in carrier genomic DNA into library preparation protocols to get to minimum input requirements recommended by protocols. Mock microbial genomic DNA (an established mixture of DNA from 8 different bacterial species and 2 fungal species) was mixed together with carrier DNA (lambda DNA) at different ratios and at different input levels starting at 50 pg and decreasing below 1 pg. This study was performed as part of the NASA Planetary Protection Analysis Working Group.","study-name":"Utility of carrier genomic DNA for ultra-low biomass metagenome sequence library preparation","data-origination":"HARVESTED"},"relationships":{"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006820/analyses"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006820/publications"}},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006820/samples"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006820/biomes"},"data":[{"type":"biomes","id":"root:Engineered:Modeled:Simulated communities (DNA mixture)","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Engineered:Modeled:Simulated%20communities%20(DNA%20mixture)"}}]},"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006820/downloads"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006820/geocoordinates"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006820"}},{"type":"studies","id":"MGYS00006819","attributes":{"accession":"MGYS00006819","samples-count":15,"bioproject":"PRJEB86960","is-private":false,"last-update":"2025-06-10T16:20:20","secondary-accession":"ERP170255","centre-name":"EMG","public-release-date":null,"study-abstract":"The Third Party Annotation (TPA) assembly was derived from the primary data set PRJNA738385","study-name":"Metatranscriptome assembly of PRJNA738385 data set (Metatranscriptomics of shellfish hatchery intake water)","data-origination":"SUBMITTED"},"relationships":{"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006819/analyses"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006819/publications"}},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006819/samples"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006819/biomes"},"data":[{"type":"biomes","id":"root:Environmental:Aquatic:Aquaculture","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Aquaculture"}}]},"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006819/downloads"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006819/geocoordinates"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006819"}},{"type":"studies","id":"MGYS00006818","attributes":{"accession":"MGYS00006818","samples-count":1,"bioproject":"PRJEB63161","is-private":false,"last-update":"2025-06-05T13:49:34","secondary-accession":"ERP148312","centre-name":"EMG","public-release-date":null,"study-abstract":"The Third Party Annotation (TPA)  assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA799832, and was assembled with metaspades v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Large intestine:Fecal.","study-name":"EMG produced TPA metagenomics assembly of PRJNA799832 data set (Raw metagenomic sequence reads of human gut in patients with pituitary adenoma).","data-origination":"SUBMITTED"},"relationships":{"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006818/analyses"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006818/publications"}},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006818/samples"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006818/biomes"},"data":[{"type":"biomes","id":"root:Host-associated:Human:Digestive system:Large intestine:Fecal","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Human:Digestive%20system:Large%20intestine:Fecal"}}]},"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006818/downloads"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006818/geocoordinates"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006818"}},{"type":"studies","id":"MGYS00006817","attributes":{"accession":"MGYS00006817","samples-count":38,"bioproject":"PRJEB56596","is-private":false,"last-update":"2025-06-05T15:52:16","secondary-accession":"ERP141552","centre-name":"EMG","public-release-date":null,"study-abstract":"The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA744865, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Mammals:Digestive system.","study-name":"EMG produced TPA metagenomics assembly of PRJNA744865 data set (microbiome of ovariectomized mice under synbiotic treatment).","data-origination":"SUBMITTED"},"relationships":{"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006817/analyses"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006817/publications"}},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006817/samples"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006817/biomes"},"data":[{"type":"biomes","id":"root:Host-associated:Mammals:Digestive system","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Mammals:Digestive%20system"}}]},"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006817/downloads"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006817/geocoordinates"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006817"}},{"type":"studies","id":"MGYS00006816","attributes":{"accession":"MGYS00006816","samples-count":1,"bioproject":"PRJEB72656","is-private":false,"last-update":"2025-06-04T17:25:26","secondary-accession":"ERP157432","centre-name":"EMG","public-release-date":null,"study-abstract":"The Third Party Annotation (TPA)  assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA469177, and was assembled with metaspades v3.15.3. This project includes samples from the following biomes: root:Host-associated:Plants:Phylloplane.","study-name":"EMG produced TPA metagenomics assembly of PRJNA469177 data set (Leaf surface microbial communities from wheat plants in UC Gill Tract Community Farm, Albany, California, United States - DLSL W.R1 metagenome).","data-origination":"SUBMITTED"},"relationships":{"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006816/analyses"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006816/publications"}},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006816/samples"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006816/biomes"},"data":[{"type":"biomes","id":"root:Host-associated:Plants:Phylloplane","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Plants:Phylloplane"}}]},"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006816/downloads"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006816/geocoordinates"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006816"}},{"type":"studies","id":"MGYS00006815","attributes":{"accession":"MGYS00006815","samples-count":67,"bioproject":"PRJEB62692","is-private":false,"last-update":"2025-06-03T13:23:52","secondary-accession":"ERP147808","centre-name":"EMG","public-release-date":null,"study-abstract":"The Third Party Annotation (TPA)  assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB41539, and was assembled with metaspades v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Large intestine:Fecal.","study-name":"EMG produced TPA metagenomics assembly of PRJEB41539 data set (Alterations of gut microbiome, metabolome and lipidome in Takayasu arteritis).","data-origination":"SUBMITTED"},"relationships":{"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006815/analyses"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006815/publications"}},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006815/samples"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006815/biomes"},"data":[{"type":"biomes","id":"root:Host-associated:Human:Digestive system:Large intestine:Fecal","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Human:Digestive%20system:Large%20intestine:Fecal"}}]},"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006815/downloads"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006815/geocoordinates"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006815"}},{"type":"studies","id":"MGYS00006814","attributes":{"accession":"MGYS00006814","samples-count":68,"bioproject":"PRJEB63459","is-private":false,"last-update":"2025-06-05T19:35:03","secondary-accession":"ERP148607","centre-name":"EMG","public-release-date":null,"study-abstract":"The Third Party Annotation (TPA)  assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA862077, and was assembled with metaspades v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Large intestine:Fecal.","study-name":"EMG produced TPA metagenomics assembly of PRJNA862077 data set (gut metagenome and type-1 diabetes).","data-origination":"SUBMITTED"},"relationships":{"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006814/analyses"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006814/publications"}},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006814/samples"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006814/biomes"},"data":[{"type":"biomes","id":"root:Host-associated:Human:Digestive system:Large intestine:Fecal","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Human:Digestive%20system:Large%20intestine:Fecal"}}]},"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006814/downloads"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006814/geocoordinates"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006814"}},{"type":"studies","id":"MGYS00006813","attributes":{"accession":"MGYS00006813","samples-count":1,"bioproject":"PRJEB68340","is-private":false,"last-update":"2025-05-30T12:57:44","secondary-accession":"ERP153298","centre-name":"EMG","public-release-date":null,"study-abstract":"The Third Party Annotation (TPA)  assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA375455, and was assembled with metaspades v3.15.3. This project includes samples from the following biomes: root:Environmental:Aquatic:Marine.","study-name":"EMG produced TPA metagenomics assembly of PRJNA375455 data set (Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - Knorr_S15_td_AAIW_ad_750m_LV_A metagenome).","data-origination":"SUBMITTED"},"relationships":{"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006813/analyses"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006813/publications"}},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006813/samples"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006813/biomes"},"data":[{"type":"biomes","id":"root:Environmental:Aquatic:Marine","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Environmental:Aquatic:Marine"}}]},"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006813/downloads"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006813/geocoordinates"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006813"}},{"type":"studies","id":"MGYS00006812","attributes":{"accession":"MGYS00006812","samples-count":1,"bioproject":"PRJEB72654","is-private":false,"last-update":"2025-05-30T12:52:20","secondary-accession":"ERP157430","centre-name":"EMG","public-release-date":null,"study-abstract":"The Third Party Annotation (TPA)  assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA796936, and was assembled with metaspades v3.15.3. This project includes samples from the following biomes: root:Host-associated:Plants:Phylloplane.","study-name":"EMG produced TPA metagenomics assembly of PRJNA796936 data set (Australian wheat virome).","data-origination":"SUBMITTED"},"relationships":{"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006812/analyses"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006812/publications"}},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006812/samples"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006812/biomes"},"data":[{"type":"biomes","id":"root:Host-associated:Plants:Phylloplane","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Plants:Phylloplane"}}]},"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006812/downloads"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006812/geocoordinates"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006812"}},{"type":"studies","id":"MGYS00006811","attributes":{"accession":"MGYS00006811","samples-count":98,"bioproject":"PRJEB62839","is-private":false,"last-update":"2025-05-30T22:05:05","secondary-accession":"ERP147961","centre-name":"EMG","public-release-date":null,"study-abstract":"The Third Party Annotation (TPA)  assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB52748, and was assembled with metaspades v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Large intestine:Fecal.","study-name":"EMG produced TPA metagenomics assembly of PRJEB52748 data set (Gut microbiome function and composition in infants from rural Kenya and association with human milk oligosaccharides).","data-origination":"SUBMITTED"},"relationships":{"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006811/analyses"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006811/publications"}},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006811/samples"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006811/biomes"},"data":[{"type":"biomes","id":"root:Host-associated:Human:Digestive system:Large intestine:Fecal","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Human:Digestive%20system:Large%20intestine:Fecal"}}]},"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006811/downloads"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006811/geocoordinates"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00006811"}}],"meta":{"pagination":{"page":1,"pages":208,"count":5197}}}