{"links":{"first":"https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS2653049/studies?format=json&page=1","last":"https://www.ebi.ac.uk/metagenomics/api/v1/samples/ERS2653049/studies?format=json&page=1","next":null,"prev":null},"data":[{"type":"studies","id":"MGYS00002961","attributes":{"samples-count":191,"bioproject":"PRJEB28237","accession":"MGYS00002961","is-private":false,"last-update":"2018-09-10T08:42:42","secondary-accession":"ERP110418","centre-name":"CENTRE DE RECHERCHE EN INFECTIOLOGIE DE L'UNIVERSITE LAVAL","public-release-date":null,"study-abstract":"In this study, we used culture enrichment of stools to reveal lower abundance bacteria by high-throughput sequencing. We sequenced fecal bacteria growing under four culture conditions from 24 individuals, before and after use of antibiotics (day 0 and day 7). Overall, 187 species of bacteria had an assembly size greater than 1 million nucleotides, 67 species achieved it only under culture conditions and 22 only in culture-independent fecal microbiomes.The four culture conditions are : (i) MCDA maximum enrichment broth anaerobic culture (MEB-ANA)(ii) MCDA maximum enrichment broth aerobic culture (air enriched with 5% CO2) (MEB-CO2), (iii) MCDA anaerobic culture in presence of 32µg/ml cefoxitin (FOX-ANA)(iv) MCDA aerobic (with 5% CO2) culture in presence of 32µg/ml cefoxitin (FOX-CO2)","study-name":"Culture-enriched human gut microbiomes reveal core and accessory resistance genes","data-origination":"SUBMITTED"},"relationships":{"downloads":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002961/downloads?format=json"}},"geocoordinates":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002961/geocoordinates?format=json"}},"analyses":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002961/analyses?format=json"}},"biomes":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002961/biomes?format=json"},"data":[{"type":"biomes","id":"root:Host-associated:Human:Digestive system:Large intestine:Fecal","links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/biomes/root:Host-associated:Human:Digestive%20system:Large%20intestine:Fecal?format=json"}}]},"samples":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002961/samples?format=json"}},"publications":{"links":{"related":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002961/publications?format=json"}}},"links":{"self":"https://www.ebi.ac.uk/metagenomics/api/v1/studies/MGYS00002961?format=json"}}],"meta":{"pagination":{"page":1,"pages":1,"count":1}}}