EBI metagenomics

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Nasopharyngeal microbiota of feedlot cattle exposed to commingling and auction market stress. ...

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Monitoring the nasopharyngeal microbiota in feedlot cattle from entry to exit ...

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Bovine respiratory disease (BRD) is a major cause of morbidity, mortality and economic loss in the US cattle industry. In view of the importance of this disease complex, and the need to ...

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Efficient characterization of airway microbiota is expected to provide insights into the pathophysiology of respiratory diseases. No studies have examined the relationships between ...

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The primary objective of this study was to apply next generation techniques to characterize the composition and structure of the respiratory tract microbial communities in clinically ...

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Bacteria, many of which are normal flora of the bovine upper respiratory tract, can cause and exacerbate virus or stess induced bovine respiratory disease complex (BRDC). The objective of ...

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Background: Type II diabetes is a chronic health condition which is associated with skin conditions including chronic foot ulcers and an increased incidence of skin infections. The skin ...

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Drinking water (DW) biofilms are well known to harbor opportunistic pathogens, however, these biofilm communities remain poorly characterized by culture-independent approaches that ...

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The ASS lime injection - injection site Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set, PRJEB6137 . This project includes samples ...

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The Soil diversity Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set, PRJEB14534 . This project includes samples from the following ...

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The 402460 Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set, SRP008617 . This project includes samples from the following biomes :Soil . ...

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The soil metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set, PRJNA188489 . This project includes samples from the following ...

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The gut metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set, PRJNA202380 . This project includes samples from the following ...

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In a crossover design feeding experiment in two rearing water, trout was fed two non-aquatic alternative protein diets to understand the effect of the water systems on trout performance and ...

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Fecal microbiota transplantation (FMT) is a treatment for microbiome-associated diseases in which gut microbiota are transferred from a healthy donor to a patient. Although the success of ...

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How to cite

Cover of the Nucleic Acids Research journal

To cite EBI Metagenomics, please refer to the following publication:

Alex L. Mitchell, Maxim Scheremetjew, Hubert Denise, Simon Potter, Aleksandra Tarkowska, Matloob Qureshi, Gustavo A. Salazar, Sebastien Pesseat, Miguel A. Boland, Fiona M. I. Hunter, Petra ten Hoopen, Blaise Alako, Clara Amid, Darren J. Wilkinson, Thomas P. Curtis, Guy Cochrane, Robert D. Finn (2017).
EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies. Nucleic Acids Research (2017) doi: 10.1093/nar/gkx967

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