Alistipes indistinctus

Taxonomy
Taxonomy database identifier: 626932
Superkingdom		Bacteria
Phylum		Bacteroidetes
Order		Bacteroidales
Family		Rikenellaceae
Genus		Alistipes
Species		indistinctus
Peptidase			View peptidase sequences from Alistipes indistinctus
Count of known and putative peptidases: 43, non-peptidase homologues 7
Completely sequences genomes from subspecies and strains				Protein coding genes
	To show all strains with completely sequenced genomes, click here.

Clan	Family	MEROPS ID	Peptidase or homologue (subtype)	MERNUM	Gene	Locus
AC	A8	unassigned	family A8 unassigned peptidases	MER0251973		HMPREF9450_00704
CA	C1	unassigned	subfamily C1A unassigned peptidases	MER0428696		HMPREF9450_02197
CA	C10	unassigned	family C10 unassigned peptidases	MER0291585		HMPREF9450_00212
CD	C11	unassigned	family C11 unassigned peptidases	MER0291633		HMPREF9450_01804
G-	G5	unassigned	family G5 unassigned peptidases	MER0937570	HMPREF9450_01787
MA	M1	unassigned	family M1 unassigned peptidases	MER0335198		HMPREF9450_01411
MA	M3	unassigned	subfamily M3A unassigned peptidases	MER0340579		HMPREF9450_01529
MA	M3	unassigned	subfamily M3A unassigned peptidases	MER0340209		HMPREF9450_01603
MA	M12	unassigned	subfamily M12A unassigned peptidases	MER0356444		HMPREF9450_01938
MA	M12	unassigned	subfamily M12A unassigned peptidases	MER0356389		HMPREF9450_01940
MA	M41	M41.A17	DDB_G0284249 g.p. (Dictyostelium discoideum)	MER0363242	ftsH	HMPREF9450_01098
MA	M48	M48.A03	YcaL protein (Escherichia coli)	MER0887780	HMPREF9450_01341
MA	M48	unassigned	subfamily M48C unassigned peptidases	MER0887070	HMPREF9450_00864
MA	M49	M49.003	dipeptidyl-peptidase IIIB (Bacteroides thetaiotaomicron-type)	MER0887539	HMPREF9450_00634
MA	M56	unassigned	family M56 unassigned peptidases	MER0933768	HMPREF9450_00086
MD	M15	unassigned	subfamily M15C unassigned peptidases	MER0469855		HMPREF9450_02317
MD	M15	unassigned	subfamily M15D unassigned peptidases	MER0386297		HMPREF9450_01179
ME	M16	unassigned	subfamily M16B unassigned peptidases	MER0390992		HMPREF9450_01601
ME	M16	unassigned	subfamily M16B unassigned peptidases	MER0391507		HMPREF9450_02174
MG	M24	non-peptidase homologue	subfamily M24B non-peptidase homologues	MER0483995		HMPREF9450_02017
MG	M24	unassigned	subfamily M24A unassigned peptidases	MER0394764	map	HMPREF9450_00076
MG	M24	unassigned	subfamily M24B unassigned peptidases	MER0481022		HMPREF9450_00774
MH	M20	M20.003	peptidase T	MER0303420
MH	M20	M20.012	Pep581 peptidase	MER0303587		HMPREF9450_01321
MH	M20	unassigned	subfamily M20A unassigned peptidases	MER0369512		HMPREF9450_01273
MH	M20	unassigned	subfamily M20C unassigned peptidases	MER0303677		HMPREF9450_02267
MH	M20	unassigned	family M20D unassigned peptidases	MER0372528		HMPREF9450_01135
MH	M20	unassigned	subfamily M20F unassigned peptidases	MER0853540	HMPREF9450_02289
MH	M28	unassigned	subfamily M28F unassigned peptidases	MER0287582		HMPREF9450_01732
MH	M28	unassigned	family M28 unassigned peptidases	MER0191896		HMPREF9450_00343
MM	M50	unassigned	family M50 unassigned peptidases	MER0896374	HMPREF9450_00924
MO	M23	M23.009	Mername-AA292 peptidase	MER0314364		HMPREF9450_02160
MO	M23	M23.011	YebA peptidase	MER0387962		HMPREF9450_02202
MO	M23	non-peptidase homologue	subfamily M23B non-peptidase homologues	MER0389778		HMPREF9450_00926
MO	M23	non-peptidase homologue	subfamily M23B non-peptidase homologues	MER0387337		HMPREF9450_01519
MO	M23	non-peptidase homologue	family M23 non-peptidase homologues	MER0479189		HMPREF9450_00749
MO	M23	unassigned	subfamily M23B unassigned peptidases	MER0389593		HMPREF9450_00978
MO	M23	unassigned	subfamily M23B unassigned peptidases	MER0389068		HMPREF9450_02203
PA	S1	S01.453	MucD peptidase	MER0407680		HMPREF9450_01033
PA	S46	S46.002	dipeptidyl-peptidase 11 (Porphyromonas gingivalis-type)	MER0312605		HMPREF9450_00755
PA	S46	S46.002	dipeptidyl-peptidase 11 (Porphyromonas gingivalis-type)	MER0312647		HMPREF9450_02265
PB	C44	C44.976	AsnB protein	MER0459953
PB	C44	non-peptidase homologue	family C44 non-peptidase homologues	MER0456780
PB	C59	C59.001	penicillin V acylase precursor	MER0316677		HMPREF9450_00902
PB	C59	C59.001	penicillin V acylase precursor	MER0330075		HMPREF9450_01588
PB	C59	unassigned	family C59 unassigned peptidases	MER0330227		HMPREF9450_01348
PB	C59	unassigned	family C59 unassigned peptidases	MER0330240		HMPREF9450_01412
PB	C69	unassigned	family C69 unassigned peptidases	MER0386718		HMPREF9450_02163
PC	C26	C26.951	carbamoyl-phosphate synthase (Homo sapiens-type)	MER0441618
PC	C26	C26.955	aminodeoxychorismate synthase, subunit II	MER0439108		HMPREF9450_01656
PC	C26	C26.957	GMP synthase	MER0442887
PC	C26	C26.964	CTP synthetase	MER0447232
PC	C26	C26.965	imidazole glycerol phosphate synthase subunit HisH	MER0445385
PC	C56	non-peptidase homologue	family C56 non-peptidase homologues	MER0385535		HMPREF9450_00247
PC	S51	S51.001	dipeptidase E	MER0314024		HMPREF9450_00702
SB	S8	unassigned	subfamily S8A unassigned peptidases	MER0985090	HMPREF9450_01205
SC	S9	S09.013	dipeptidyl-peptidase 4 (bacteria-type 2)	MER0326311	HMPREF9450_01296	HMPREF9450_01296
SC	S9	unassigned	subfamily S9A unassigned peptidases	MER0404499	HMPREF9450_00636	HMPREF9450_00636
SC	S9	unassigned	subfamily S9A unassigned peptidases	MER1292745
SC	S9	unassigned	subfamily S9A unassigned peptidases	MER0325813		HMPREF9450_00045
SC	S9	unassigned	subfamily S9D unassigned peptidases	MER0326795		HMPREF9450_02044
SE	S12	non-peptidase homologue	family S12 non-peptidase homologues	MER1011618	HMPREF9450_02052
SE	S12	unassigned	family S12 unassigned peptidases	MER0354344		HMPREF9450_00445
SE	S12	unassigned	family S12 unassigned peptidases	MER0355011		HMPREF9450_00642
SE	S12	unassigned	family S12 unassigned peptidases	MER0420221		HMPREF9450_02053
SF	S24	S24.003	UmuD protein	MER0375250		HMPREF9450_01942
SF	S26	unassigned	subfamily S26A unassigned peptidases	MER0333588		HMPREF9450_02169
SH	S78	S78.001	prohead peptidase (bacteriophage HK97)	MER0322967
SJ	S16	S16.A04	DNA repair protein RadA (Escherichia coli)	MER0474230
SJ	S16	non-peptidase homologue	family S16 non-peptidase homologues	MER1033955	HMPREF9450_01667
SJ	S16	unassigned	family S16 unassigned peptidases	MER0360709	lon	HMPREF9450_00098
SK	S14	S14.001	peptidase Clp (type 1)	MER0358452	clpP	HMPREF9450_00428
SK	S14	non-peptidase homologue	family S14 non-peptidase homologues	MER0360054		HMPREF9450_01069
SK	S41	S41.004	C-terminal processing peptidase-3	MER0337855		HMPREF9450_00952
SK	S41	S41.012	Pep putative peptidase (Vibrio-type)	MER1059722	HMPREF9450_01114
SK	S41	unassigned	subfamily S41A unassigned peptidases	MER0338178		HMPREF9450_01614
SK	S41	unassigned	subfamily S41A unassigned peptidases	MER0337766		HMPREF9450_01697
SK	S49	non-peptidase homologue	subfamily S49B non-peptidase homologues	MER1070620	HMPREF9450_00132
SK	S49	unassigned	subfamily S49A unassigned peptidases	MER0299704		HMPREF9450_00758
SS	S66	unassigned	family S66 unassigned peptidases	MER0320248		HMPREF9450_01386
ST	S54	unassigned	family S54 unassigned peptidases	MER1077253	HMPREF9450_00476
ST	S54	unassigned	family S54 unassigned peptidases	MER1080469	HMPREF9450_01490
U-	U32	U32.001	collagenase (Porphyromonas-type)	MER0325465
U-	U32	unassigned	family U32 unassigned peptidases	MER0403773		HMPREF9450_01437

GENOME ANALYSIS: Comparison with 9 completely sequenced genomes from family Rikenellaceae
Family	Comment
C26	lineage specific expansion (5 homologues)
C59	lineage specific expansion (4 homologues)
M1	significant presence (1 homologues)
M16	significant decrease in homologues (2 homologues)
M28	significant presence (2 homologues)
M56	significant decrease in homologues (1 homologues)
S8	significant decrease in homologues (1 homologues)
S12	significant presence (4 homologues)
S24	significant decrease in homologues (1 homologues)
S78	significant presence (1 homologues)