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Pantoea vagans

Taxonomy
Taxonomy database identifier: 470934
Superkingdom Bacteria
Phylum Proteobacteria
Class Gammaproteobacteria
Order Enterobacteriales
Family Enterobacteriaceae
Genus Pantoea
Species vagans
Peptidase View peptidase sequences from Pantoea vagans
Count of known and putative peptidases: 60, non-peptidase homologues 25
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
A- A39 non-peptidase homologue family A39 non-peptidase homologues MER1368235
A- A39 non-peptidase homologue family A39 non-peptidase homologues MER1368153
A- A39 non-peptidase homologue family A39 non-peptidase homologues MER1375730
A- A39 non-peptidase homologue family A39 non-peptidase homologues MER1374552
A- A39 non-peptidase homologue family A39 non-peptidase homologues MER1373203
AC A8 A08.001 signal peptidase II MER1152345
AC A8 A08.001 signal peptidase II MER0324330 lspA Pvag_0078
AD A24 non-peptidase homologue subfamily A24A non-peptidase homologues MER1158030
AD A24 unassigned subfamily A24A unassigned peptidases MER1158247
AD A24 unassigned subfamily A24A unassigned peptidases MER1157969
AD A24 unassigned family A24 unassigned peptidases MER0262684 pilD Pvag_2891
AF A26 A26.003 plasminogen activator Pla MER0224190 pgtE Pvag_pPag30480
AF A26 unassigned family A26 unassigned peptidases MER1159393
CA C39 C39.005 colicin V processing peptidase MER0224172 cvaB Pvag_pPag10096
CF C15 C15.001 pyroglutamyl-peptidase I (prokaryote) MER0280002 pcp Pvag_0541
CL C82 C82.A01 LdtF protein (Escherichia coli) MER0243814 Pvag_0272
CL C82 C82.A04 YbiS protein (Escherichia coli) MER0461511 ybiS Pvag_0613
CL C82 C82.A05 YcfS protein (Escherichia coli) MER0461512 ycfS Pvag_1160
CO C40 C40.004 spr peptidase MER0452421 spr
CO C40 C40.A01 NlpC protein (Escherichia coli) MER0452339 nlpC Pvag_1145
CO C40 non-peptidase homologue family C40 non-peptidase homologues MER0377005 ydhO Pvag_1173
G- G5 unassigned family G5 unassigned peptidases MER0911444 yprA
G- G5 unassigned family G5 unassigned peptidases MER0937372 Pvag_3056
GC G4 non-peptidase homologue family G4 non-peptidase homologues MER0362268 Pvag_0424
I- I104 I104.UPW family I104 unassigned peptidase inhibitors MER1384671
I- I104 I104.UPW family I104 unassigned peptidase inhibitors MER1384693
I- I104 I104.UPW family I104 unassigned peptidase inhibitors MER1384700
MA M1 M01.005 alanyl aminopeptidase (bacterial-type) MER0335953 pepN Pvag_0758
MA M3 M03.004 oligopeptidase A MER0336029 prlC Pvag_3054
MA M3 M03.005 peptidyl-dipeptidase Dcp MER0346476 dcp Pvag_1368
MA M4 M04.023 zpx peptidase MER0287801 prt1 Pvag_2271
MA M32 M32.003 TcMCP1 carboxypeptidase MER0295052 ctaQ Pvag_1429
MA M41 M41.001 FtsH peptidase MER0233606 ftsH Pvag_3671
MA M48 M48.002 HtpX peptidase MER0296038 htpX Pvag_1603
MA M48 M48.022 low osmolarity induced peptidase MER0883287 yggG
MA M48 unassigned family M48 unassigned peptidases MER0224179 Pvag_pPag30103
MA M90 M90.001 MtfA peptidase MER0227996 yeeI Pvag_1815
MC M14 M14.034 murein peptide amidase MpaA MER0468854 ycjI Pvag_1448
MD M15 unassigned subfamily M15D unassigned peptidases MER0275301 vanX Pvag_0447
MD M74 M74.001 murein endopeptidase MER0233895 mepA Pvag_2142
ME M16 M16.006 pqqF protein MER0390162 pqqF Pvag_1287
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0471038 yhjJ Pvag_3369
ME M16 unassigned subfamily M16A unassigned peptidases MER0276935 ptr Pvag_2494
MF M17 M17.003 PepA aminopeptidase MER0289584 pepA Pvag_3721
MF M17 M17.004 PepB aminopeptidase MER0340552 pepB Pvag_2288
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0237428 ampM Pvag_0201
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0224188 map Pvag_pPag30423
MG M24 M24.003 Xaa-Pro dipeptidase (bacteria-type) MER0481774 pepQ Pvag_3443
MG M24 M24.004 aminopeptidase P (bacteria) MER0239113 pepP Pvag_2532
MG M24 M24.004 aminopeptidase P (bacteria) MER0970152
MG M24 unassigned subfamily M24A unassigned peptidases MER1241786
MG M24 unassigned subfamily M24A unassigned peptidases MER1221532
MG M24 unassigned subfamily M24B unassigned peptidases MER0135980
MH M20 M20.003 peptidase T MER0303220 pept1 Pvag_0931
MH M20 M20.007 Xaa-His dipeptidase MER0303512 pepD Pvag_0277
MH M20 M20.010 DapE peptidase MER0475023 dapE Pvag_2229
MH M20 M20.015 YxeP putative peptidase MER0372749 hipo5 Pvag_1905
MH M20 M20.020 p-aminobenzoyl-glutamate hydrolase subunit A MER0373890 iaaH Pvag_3565
MH M20 M20.974 acetylornithine deacetylase ArgE MER0369991 argE/arge1 Pvag_3135
MH M20 non-peptidase homologue subfamily M20D non-peptidase homologues MER0474635 abgB Pvag_3564
MH M20 non-peptidase homologue family M20 non-peptidase homologues MER0224175 Pvag_pPag20211
MH M20 non-peptidase homologue family M20 non-peptidase homologues MER0842186 amaB
MH M20 unassigned subfamily M20A unassigned peptidases MER0369738 arge3 Pvag_3725
MH M20 unassigned subfamily M20B unassigned peptidases MER0370814 pept3 Pvag_1409
MH M20 unassigned family M20D unassigned peptidases MER0224178 ama Pvag_pPag30020
MH M20 unassigned family M20D unassigned peptidases MER0224184 hipO1 Pvag_pPag30333
MH M20 unassigned family M20D unassigned peptidases MER0224185 hipO3 Pvag_pPag30350
MH M20 unassigned family M20D unassigned peptidases MER0372404 hipo1 Pvag_0643
MH M20 unassigned family M20D unassigned peptidases MER0372383 hipo3 Pvag_1878
MH M20 unassigned family M20D unassigned peptidases MER0373921 amhX Pvag_2610
MH M20 unassigned family M20 unassigned peptidases MER0852120 Pvag_1406
MH M28 M28.005 IAP aminopeptidase MER0197406 iap Pvag_2451
MH M28 non-peptidase homologue subfamily M28C non-peptidase homologues MER1246207
MJ M19 unassigned family M19 unassigned peptidases MER0290471 acdP Pvag_1280
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0866642 Pvag_2879
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0860061 hutI
MM M50 M50.004 RseP peptidase MER0891536 yaeL
MN M55 unassigned family M55 unassigned peptidases MER0306099 Pvag_1059
MO M23 M23.011 YebA peptidase MER0386935 yebA Pvag_1661
MO M23 M23.950 YibP g.p. (Escherichia sp.) MER0478739 yibP Pvag_3175
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0477947 nlpD Pvag_2437
MU M103 M103.001 TldD peptidase (Escherichia coli) MER0332633 tldD Pvag_2818
MU M103 M103.950 microcin-processing peptidase 1 homologue MER0238193 pmbA Pvag_2756
NB N6 N06.A01 FlhB protein (Escherichia coli) MER0405571 flhB Pvag_1718
ND N4 non-peptidase homologue family N4 non-lyase homologues MER0224168 espC Pvag_pPag10081
ND N4 non-peptidase homologue family N4 non-lyase homologues MER0294862 ycgV Pvag_pPag10084
PA S1 S01.260 B1598 peptidase MER0488410 ydgD Pvag_1432
PA S1 S01.273 DegP peptidase MER0327480 htrA Pvag_0196
PA S1 S01.274 DegQ peptidase MER0277552 degQ Pvag_3619
PA S1 S01.275 DegS peptidase MER0408505 degS Pvag_3618
PA S6 unassigned family S6 unassigned peptidases MER1274314
PA S6 unassigned family S6 unassigned peptidases MER1273280
PA S6 unassigned family S6 unassigned peptidases MER1273171
PA S6 unassigned family S6 unassigned peptidases MER1273179
PA S6 unassigned family S6 unassigned peptidases MER0224169 espC Pvag_pPag10081
PA S6 unassigned family S6 unassigned peptidases MER0224171 iga Pvag_pPag10082
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0454480 purF Pvag_2123
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0224174 asnB Pvag_pPag20165
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0458236 asnB Pvag_0516
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0455628 glmS Pvag_3266
PB C45 unassigned family C45 unassigned peptidases MER0725415 Pvag_1680
PB T1 T01.006 HslV component of HslUV peptidase MER0443335 hslV Pvag_3147
PB T2 unassigned family T2 unassigned peptidases MER0276502 ybiK Pvag_0675
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0275458 ggt3 Pvag_2995
PB T3 T03.025 oxamate amidohydrolase proenzyme (Klebsiella pneumonia) MER0379590 ggt1 Pvag_0252
PB T3 T03.025 oxamate amidohydrolase proenzyme (Klebsiella pneumonia) MER0379718 ggtA Pvag_3340
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0435840 pabA Pvag_2923
PC C26 C26.960 TrpD protein (anthranilate synthase component II) MER0441211 trpG Pvag_1505
PC C26 C26.961 PuuD protein MER0447617 ycjL Pvag_1946
PC C26 C26.964 CTP synthetase MER0447834 pyrG/pyrg3 Pvag_2459
PC C26 C26.965 imidazole glycerol phosphate synthase subunit HisH MER0445364 hisH Pvag_1955
PC C26 C26.A21 LD42771 g.p. (Drosophila melanogaster) MER0443295 guaA/guaa3 Pvag_2268
PC C26 unassigned family C26 unassigned peptidases MER0440547 carA Pvag_0084
PC C26 unassigned family C26 unassigned peptidases MER0444376 guaa1 Pvag_1018
PC C56 C56.001 PfpI peptidase MER0279096 yhbO Pvag_3695
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0224176 Pvag_pPag30009
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0224183 araH Pvag_pPag30298
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0224189 nonF Pvag_pPag30449
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0386022 thiJ Pvag_0363
PC S51 unassigned family S51 unassigned peptidases MER0314095 pepE Pvag_3438
SC S9 S09.010 oligopeptidase B MER0489383 ptrB Pvag_1651
SC S9 unassigned subfamily S9B unassigned peptidases MER1002269 yeiG
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0224177 Pvag_pPag30019
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0224181 Pvag_pPag30191
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0224186 Pvag_pPag30364
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0224191 Pvag_pPag30520
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0224173 Pvag_pPag20079
SC S33 unassigned family S33 unassigned peptidases MER0224182 cpoF Pvag_pPag30256
SE S11 S11.002 murein-DD-endopeptidase MER0352616 pbpG Pvag_0617
SE S11 S11.003 penicillin-binding protein 6 MER0351077 dacC Pvag_0685
SE S11 S11.008 penicillin-binding protein 5-type peptidase MER0351122 dacA Pvag_0487
SE S11 S11.009 penicillin-binding protein 6b-type peptidase MER0351382 dacD Pvag_1936
SE S11 S11.A01 penP g.p. (Bacillus subtilis) MER0224187 bla Pvag_pPag30396
SE S12 S12.012 AmpH protein (Escherichia-type) MER0422033 ampH Pvag_2220
SE S12 unassigned family S12 unassigned peptidases MER0355339 Pvag_0003
SE S12 unassigned family S12 unassigned peptidases MER0355502 ampC Pvag_1365
SE S13 S13.001 D-Ala-D-Ala peptidase C MER0276057 dacB Pvag_3667
SF S24 S24.001 repressor LexA MER0229878 lexA Pvag_3514
SF S24 S24.003 UmuD protein MER0276742 umuD Pvag_1213
SF S24 non-peptidase homologue family S24 non-peptidase homologues MER1042948 prpA
SF S24 unassigned family S24 unassigned peptidases MER1042496 rpc
SF S26 S26.001 signal peptidase I MER0264263 lepB Pvag_2316
SJ S16 S16.001 Lon-A peptidase MER0476927 lonA Pvag_0379
SJ S16 unassigned family S16 unassigned peptidases MER1036452 sms
SJ S16 unassigned family S16 unassigned peptidases MER1032350 ycbZ
SK S14 S14.001 peptidase Clp (type 1) MER0299100 clpP Pvag_0377
SK S41 S41.001 C-terminal processing peptidase-1 MER0238931 prc Pvag_1604
SK S41 unassigned subfamily S41A unassigned peptidases MER1344934
SK S49 unassigned subfamily S49A unassigned peptidases MER1341559
SK S49 unassigned subfamily S49B unassigned peptidases MER1066860 sohB
SK S49 unassigned subfamily S49B unassigned peptidases MER0297683 sppA Pvag_1547
SS S66 S66.002 murein tetrapeptidase LD-carboxypeptidase (Escherichia-type) MER0399110 ycgQ Pvag_0997
ST S54 unassigned family S54 unassigned peptidases MER1081218 glpG
U- U32 unassigned family U32 unassigned peptidases MER0404077 yegQ Pvag_2002

GENOME ANALYSIS: Comparison with 17 completely sequenced genomes from genus Pantoea
Family Comment
C45 significant presence (1 homologues)
G4 significant presence (1 homologues)
M24 lineage specific expansion (8 homologues)
N4 significant presence (2 homologues)
S6 significant presence (6 homologues)
S9 significant decrease in homologues (2 homologues)
S12 significant decrease in homologues (3 homologues)

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Page created 8-September-2023

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