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Nitrosococcus halophilus

Taxonomy
Taxonomy database identifier: 133539
Superkingdom Bacteria
Phylum Proteobacteria
Class Gammaproteobacteria
Order Chromatiales
Family Chromatiaceae
Genus Nitrosococcus
Species halophilus
Peptidase View peptidase sequences from Nitrosococcus halophilus
Count of known and putative peptidases: 86, non-peptidase homologues 42
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AA A32 unassigned family A32 unassigned peptidases MER0427828 Nhal_3998
AC A8 A08.001 signal peptidase II MER0202184 lspA Nhal_0905
AC A8 A08.001 signal peptidase II MER1152538
AD A24 A24.001 type 4 prepilin peptidase 1 MER0202274 Nhal_3849
AD A24 unassigned subfamily A24A unassigned peptidases MER0202200 Nhal_1417
AE A31 unassigned family A31 unassigned peptidases MER0202208 Nhal_1952
CA C39 non-peptidase homologue family C39 non-peptidase homologues MER0717097 Nhal_0135
CA C39 unassigned family C39 unassigned peptidases MER0202182 Nhal_0833
CD C14 unassigned subfamily C14B unassigned peptidases MER0202180 Nhal_0829
CD C14 unassigned subfamily C14B unassigned peptidases MER0202204 Nhal_1728
CL C82 C82.A01 LdtF protein (Escherichia coli) MER0461460 Nhal_2097
CL C82 unassigned subfamily C82A unassigned peptidases MER0461459 Nhal_0592
CO C40 C40.004 spr peptidase MER0202264 Nhal_3580
G- G5 G05.A04 At3g26085 (Arabidopsis thaliana) MER0202183 Nhal_0881
G- G5 unassigned family G5 unassigned peptidases MER0912344 Nhal_1412
MA M1 M01.005 alanyl aminopeptidase (bacterial-type) MER0202196 Nhal_1302
MA M3 M03.004 oligopeptidase A MER0202168 Nhal_0455
MA M41 M41.001 FtsH peptidase MER0202269 ftsH2 Nhal_3706
MA M41 unassigned family M41 unassigned peptidases MER0202202 ftsH1 Nhal_1589
MA M48 M48.004 HtpX-2 peptidase MER0202165 htpX Nhal_0225
MA M48 M48.023 BepA (Escherichia coli) MER0202262 Nhal_3508
MA M48 non-peptidase homologue subfamily M48B non-peptidase homologues MER0887273 Nhal_1743
MA M48 unassigned subfamily M48A unassigned peptidases MER0202258 Nhal_3425
MA M48 unassigned subfamily M48B unassigned peptidases MER0202248 Nhal_3071
MA M48 unassigned subfamily M48C unassigned peptidases MER0202195 Nhal_1301
MA M48 unassigned subfamily M48C unassigned peptidases MER0202212 Nhal_2009
MA M48 unassigned subfamily M48C unassigned peptidases MER0202234 Nhal_2573
MA M56 non-peptidase homologue family M56 non-peptidase homologues MER0933755 Nhal_1743
MA M61 M61.002 BcepAP aminopeptidase (Burkholderia cepacia) MER0202235 Nhal_2617
MA M90 unassigned family M90 unassigned peptidases MER0286892 Nhal_2576
ME M16 M16.019 YMXG peptidase MER0202217 Nhal_2203
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0202219 Nhal_2204
ME M16 unassigned subfamily M16B unassigned peptidases MER0202218 Nhal_2204
ME M16 unassigned subfamily M16C unassigned peptidases MER0202206 Nhal_1875
MF M17 M17.003 PepA aminopeptidase MER0202246 pepA Nhal_3010
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0202229 Nhal_2451
MG M24 M24.004 aminopeptidase P (bacteria) MER0202271 Nhal_3716
MG M24 non-peptidase homologue family M24 non-peptidase homologues MER0202261 Nhal_3495
MH M20 M20.A18 DDB_G0279291 g.p. (Dictyostelium discoideum) MER0202233 Nhal_2572
MH M20 unassigned subfamily M20A unassigned peptidases MER0202239 dapE Nhal_2766
MH M20 unassigned subfamily M20A unassigned peptidases MER0202260 Nhal_3494
MH M20 unassigned family M20D unassigned peptidases MER0202198 Nhal_1371
MH M20 unassigned family M20 unassigned peptidases MER0202222 Nhal_2225
MH M28 unassigned subfamily M28E unassigned peptidases MER0201973 Nhal_4022
MH M28 unassigned subfamily M28E unassigned peptidases MER0204812 Nhal_4022
MH M28 unassigned subfamily M28F unassigned peptidases MER0195455 Nhal_2872
MH M28 unassigned family M28 unassigned peptidases MER0202162 Nhal_0189
MH M42 unassigned family M42 unassigned peptidases MER0202214 Nhal_2064
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0202164 Nhal_0208
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0202227 mtaD Nhal_2414
MM M50 unassigned subfamily M50B unassigned peptidases MER0202209 Nhal_1955
MM M50 unassigned subfamily M50B unassigned peptidases MER0202230 Nhal_2459
MM M50 unassigned subfamily M50B unassigned peptidases MER0894160 Nhal_3576
MO M23 M23.009 Mername-AA292 peptidase MER0202189 Nhal_1103
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0202224 Nhal_2251
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0202228 Nhal_2435
MO M23 unassigned subfamily M23B unassigned peptidases MER0202169 Nhal_0499
MP M67 unassigned subfamily M67B unassigned peptidases MER0202166 Nhal_0257
MU M103 M103.001 TldD peptidase (Escherichia coli) MER0202172 Nhal_0548
MU M103 M103.UNW family M103 non-peptidase homologues MER0202167 Nhal_0258
MU M103 M103.UNW family M103 non-peptidase homologues MER0202211 Nhal_2005
MU M103 M103.UPW family M103 unassigned peptidases MER0202210 Nhal_2004
NB N6 N06.A01 FlhB protein (Escherichia coli) MER0202267 Nhal_3613
PA S1 S01.274 DegQ peptidase MER0202192 Nhal_1160
PA S1 unassigned subfamily S1C unassigned peptidases MER0202177 Nhal_0717
PA S1 unassigned subfamily S1C unassigned peptidases MER0202201 Nhal_1588
PA S1 unassigned subfamily S1C unassigned peptidases MER0202207 Nhal_1909
PA S1 unassigned subfamily S1C unassigned peptidases MER0202216 Nhal_2200
PA S1 unassigned subfamily S1C unassigned peptidases MER0202275 Nhal_3939
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0202251 Nhal_3111
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0458160 Nhal_3177
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0202176 Nhal_0701
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0202256 Nhal_3235
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0202276 Nhal_3943
PB C44 unassigned family C44 unassigned peptidases MER0202221 Nhal_2220
PB T1 T01.006 HslV component of HslUV peptidase MER0202226 hslV Nhal_2369
PB T2 unassigned family T2 unassigned peptidases MER0202187 Nhal_1058
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0202220 Nhal_2210
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0202175 Nhal_0683
PC C26 C26.964 CTP synthetase MER0449410 pyrG Nhal_2677
PC C26 unassigned family C26 unassigned peptidases MER0202265 Nhal_3583
PC C26 unassigned family C26 unassigned peptidases MER0202270 carA Nhal_3710
PC C26 unassigned family C26 unassigned peptidases MER0202272 guaA Nhal_3752
PC C26 unassigned family C26 unassigned peptidases MER0444189 hisH Nhal_0055
PC C56 C56.001 PfpI peptidase MER0202193 Nhal_1171
PC C56 C56.972 phosphoribosylformylglycinamidine synthase MER0202247 purL Nhal_3017
PC C56 C56.A06 DDB_G0276405 (Dictyostelium discoideum) MER0202231 Nhal_2493
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0202240 Nhal_2789
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0202159 Nhal_0020
PE T5 T05.001 ornithine acetyltransferase precursor MER0202170 argJ Nhal_0502
SB S8 unassigned subfamily S8A unassigned peptidases MER0202223 Nhal_2234
SB S8 unassigned subfamily S8A unassigned peptidases MER0202268 Nhal_3623
SC S9 S09.074 tyrosyl aminopeptidase (Raphanus-type) MER0202254 Nhal_3185
SC S9 S09.B04 BSU23640 g.p. (Bacillus subtilis) MER0202232 Nhal_2508
SC S9 non-peptidase homologue subfamily S9B non-peptidase homologues MER1001554 Nhal_3586
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0202215 Nhal_2163
SC S9 unassigned subfamily S9C unassigned peptidases MER0202273 Nhal_3806
SC S9 unassigned family S9 unassigned peptidases MER0202244 Nhal_2938
SC S9 unassigned family S9 unassigned peptidases MER0202163 Nhal_0192 Nhal_0192
SC S15 unassigned family S15 unassigned peptidases MER0202266 Nhal_3586
SC S33 S33.001 prolyl aminopeptidase MER0202174 Nhal_0587
SC S33 S33.A46 YheT protein (Escherichia coli) MER0202237 Nhal_2694
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0202245 Nhal_2973
SC S33 unassigned family S33 unassigned peptidases MER0202179 bioH Nhal_0766
SC S33 unassigned family S33 unassigned peptidases MER0202194 Nhal_1224
SC S33 unassigned family S33 unassigned peptidases MER0202213 Nhal_2033
SC S33 unassigned family S33 unassigned peptidases MER0202255 Nhal_3189
SC S82 unassigned family S82 unassigned homologues MER0206253
SE S11 unassigned family S11 unassigned peptidases MER0202173 Nhal_0575
SF S26 S26.001 signal peptidase I MER0202178 Nhal_0719
SJ S16 S16.001 Lon-A peptidase MER0202250 Nhal_3108
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0202263 Nhal_3524
SJ S16 non-peptidase homologue family S16 non-peptidase homologues MER0202257 Nhal_3276
SJ S16 unassigned family S16 unassigned peptidases MER0202186 Nhal_1048
SJ S16 unassigned family S16 unassigned peptidases MER0202199 Nhal_1379
SJ S16 unassigned family S16 unassigned peptidases MER0202203 Nhal_1639
SK S14 S14.001 peptidase Clp (type 1) MER0202249 clpP Nhal_3106
SK S14 unassigned family S14 unassigned peptidases MER0202185 Nhal_0997
SK S41 S41.004 C-terminal processing peptidase-3 MER0202160 Nhal_0021
SK S49 S49.005 archaean signal peptide peptidase 1 MER0202252 Nhal_3157
SK S49 unassigned subfamily S49B unassigned peptidases MER0202171 Nhal_0507
SK S49 unassigned subfamily S49B unassigned peptidases MER0202236 Nhal_2669
ST S54 S54.027 RhoII peptidase (Haloferax volcanii) and similar MER0202190 Nhal_1110
ST S54 S54.027 RhoII peptidase (Haloferax volcanii) and similar MER0202243 Nhal_2937

GENOME ANALYSIS: Comparison with 14 completely sequenced genomes from family Chromatiaceae
Family Comment
A31 significant decrease in homologues (1 homologues)
C14 significant presence (2 homologues)
C39 significant presence (2 homologues)
C56 lineage specific expansion (5 homologues)
M1 significant decrease in homologues (1 homologues)
M16 lineage specific expansion (4 homologues)
M20 lineage specific expansion (5 homologues)
M28 lineage specific expansion (4 homologues)
S9 lineage specific expansion (7 homologues)
S15 significant presence (1 homologues)
S16 lineage specific expansion (6 homologues)
T2 significant presence (1 homologues)

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