Holdemania filiformis

Taxonomy
Taxonomy database identifier: 61171
Superkingdom Bacteria
Phylum Firmicutes
Species filiformis
Class Erysipelotrichi
Order Erysipelotrichales
Family Erysipelotrichaceae
Genus Holdemania
Peptidase View peptidase sequences from Holdemania filiformis
Count of known and putative peptidases: 78, non-peptidase homologues 12
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AC A8 unassigned family A8 unassigned peptidases MER0277483 lspA HOLDEFILI_01981
AC A8 unassigned family A8 unassigned peptidases MER1155429
AD A24 A24.019 ComC peptidase MER0232832 HOLDEFILI_01952
AE A25 unassigned family A25 unassigned peptidases MER0191378 HOLDEFILI_03066
CA C110 C110.UNW family C110 non-peptidase homologues MER0627152
CA C110 C110.UPW family C110 unassigned peptidases MER0626908
CF C15 C15.001 pyroglutamyl-peptidase I (prokaryote) MER0292438
CL C60 unassigned subfamily C60B unassigned peptidases MER0300182
CO C40 C40.007 YddH peptidase MER0170456
CO C40 unassigned family C40 unassigned peptidases MER0378068
MA M3 unassigned subfamily M3B unassigned peptidases MER0166935
MA M3 unassigned subfamily M3B unassigned peptidases MER0170518
MA M3 unassigned subfamily M3C unassigned peptidases MER0199211
MA M41 M41.009 FtsH-2 peptidase MER0362905
MA M41 unassigned family M41 unassigned peptidases MER0363361
MA M56 unassigned family M56 unassigned peptidases MER0934345
MA M56 unassigned family M56 unassigned peptidases MER0899758
MA M56 unassigned family M56 unassigned peptidases MER0934592
MA M56 unassigned family M56 unassigned peptidases MER0167133
MA M56 unassigned family M56 unassigned peptidases MER0478844
MA M56 unassigned family M56 unassigned peptidases MER0170922
MA M56 unassigned family M56 unassigned peptidases MER0480040
MA M56 unassigned family M56 unassigned peptidases MER0191010
MA M61 non-peptidase homologue family M61 non-peptidase homologues MER0902423
MA M78 unassigned family M78 unassigned peptidases MER0910367
MC M14 non-peptidase homologue subfamily M14A non-peptidase homologues MER0468824
MC M14 unassigned subfamily M14B unassigned peptidases MER0382340
MC M14 unassigned subfamily M14B unassigned peptidases MER0468768
MD M15 M15.024 DacB metallopeptidase (Streptococcus pneumoniae) MER0170393
MD M15 non-peptidase homologue subfamily M15B non-peptidase homologues MER0167734
MD M15 unassigned subfamily M15B unassigned peptidases MER0311803
MD M15 unassigned subfamily M15B unassigned peptidases MER0158881 HOLDEFILI_04107
ME M16 M16.A20 ymfH g.p. (Bacillus subtilis) MER0390735
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0920981
MG M24 unassigned subfamily M24A unassigned peptidases MER0170631
MG M24 unassigned subfamily M24A unassigned peptidases MER0394762
MG M24 unassigned subfamily M24B unassigned peptidases MER0481954
MG M24 unassigned subfamily M24B unassigned peptidases MER0171888 HOLDEFILI_03426
MH M18 unassigned family M18 unassigned peptidases MER0179826
MH M18 unassigned family M18 unassigned peptidases MER0289878
MH M20 non-peptidase homologue family M20 non-peptidase homologues MER0171983
MH M20 non-peptidase homologue family M20 non-peptidase homologues MER0158946
MH M20 unassigned subfamily M20A unassigned peptidases MER0854072
MH M20 unassigned subfamily M20B unassigned peptidases MER0370643
MH M20 unassigned subfamily M20C unassigned peptidases MER0371191
MH M20 unassigned family M20D unassigned peptidases MER0170817
MH M20 unassigned family M20D unassigned peptidases MER0374271
MH M20 unassigned family M20D unassigned peptidases MER0171799
MH M20 unassigned family M20D unassigned peptidases MER0372456
MH M20 unassigned family M20 unassigned peptidases MER0472289
MH M28 unassigned subfamily M28F unassigned peptidases MER0170583
MH M42 unassigned family M42 unassigned peptidases MER0170979
MH M42 unassigned family M42 unassigned peptidases MER0172305
MJ M19 unassigned family M19 unassigned peptidases MER0171162
MJ M38 M38.978 dihydropyrimidinase related protein-5 MER0869342
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0862884
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0873415
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0864130
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0862541
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0867570
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0870122
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0866735
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0869422
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0871734
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0866916
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0864594
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0870942
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0870824
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0869592
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0874109
MJ M38 unassigned family M38 unassigned peptidases MER0237764 HOLDEFILI_03937
MM M50 unassigned subfamily M50B unassigned peptidases MER0897847
MM M50 unassigned subfamily M50B unassigned peptidases MER0171097
MO M23 unassigned subfamily M23B unassigned peptidases MER0479765
MO M23 unassigned subfamily M23B unassigned peptidases MER0166987
MO M23 unassigned subfamily M23B unassigned peptidases MER0389864
MO M23 unassigned subfamily M23B unassigned peptidases MER0478843
MO M23 unassigned subfamily M23B unassigned peptidases MER0170921
MQ M29 unassigned family M29 unassigned peptidases MER0170876
MT M81 unassigned family M81 unassigned peptidases MER0223306
MT M81 unassigned family M81 unassigned peptidases MER0223307
MT M81 unassigned family M81 unassigned peptidases MER0223308
MT M81 unassigned family M81 unassigned peptidases MER0223309
MT M81 unassigned family M81 unassigned peptidases MER0223310
MT M81 unassigned family M81 unassigned peptidases MER0223311
MT M81 unassigned family M81 unassigned peptidases MER0223312
MT M81 unassigned family M81 unassigned peptidases MER0223313
MT M81 unassigned family M81 unassigned peptidases MER0223314
MT M81 unassigned family M81 unassigned peptidases MER0223315
MT M81 unassigned family M81 unassigned peptidases MER0223316
PA S1 S01.B81 htrA (Bacillus subtilis-type) MER0407959
PA S1 unassigned subfamily S1C unassigned peptidases MER0406202
PA S1 unassigned subfamily S1E unassigned peptidases MER0406836
PA S55 S55.001 SpoIVB peptidase MER0234140 HOLDEFILI_03594
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0172249
PB C59 unassigned family C59 unassigned peptidases MER0914686
PB T2 T02.007 Chryseobacterium meningosepticum-type N4-(beta-N-acetylglucosaminyl)-L-asparaginase MER0306942
PB T3 T03.025 oxamate amidohydrolase proenzyme (Klebsiella pneumonia) MER0379560
PC C26 C26.957 GMP synthase MER0442500
PC C26 C26.964 CTP synthetase MER0450098
PC C26 unassigned family C26 unassigned peptidases MER0441772
PC C26 unassigned family C26 unassigned peptidases MER0447337
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0385241
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0167823
PC S51 non-peptidase homologue family S51 non-peptidase homologues MER1051366
SC S9 S09.071 trilobed protease MER0231219 HOLDEFILI_02641
SC S9 S09.071 trilobed protease MER0172140
SC S9 S09.071 trilobed protease MER0170696
SC S9 S09.071 trilobed protease MER0170760
SC S9 S09.071 trilobed protease MER0404908
SC S9 S09.071 trilobed protease MER0171941
SC S9 S09.071 trilobed protease MER0172036 HOLDEFILI_03451
SC S9 S09.071 trilobed protease MER0172086
SC S9 S09.B04 BSU23640 g.p. (Bacillus subtilis) MER0478661
SC S9 non-peptidase homologue subfamily S9B non-peptidase homologues MER0997812
SC S9 non-peptidase homologue subfamily S9D non-peptidase homologues MER0967977
SC S9 unassigned subfamily S9A unassigned peptidases MER0325942
SC S9 unassigned subfamily S9C unassigned peptidases MER0167179 HOLDEFILI_00771
SC S10 unassigned family S10 unassigned peptidases MER0490465
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER1019893
SC S33 unassigned family S33 unassigned peptidases MER0381334
SE S11 S11.004 K15-type DD-transpeptidase MER0351650
SE S11 S11.004 K15-type DD-transpeptidase MER0352358
SE S11 S11.004 K15-type DD-transpeptidase MER0352662
SE S11 S11.005 D-Ala-D-Ala carboxypeptidase DacF MER0172197
SE S12 unassigned family S12 unassigned peptidases MER1012090
SE S12 unassigned family S12 unassigned peptidases MER1004913
SE S12 unassigned family S12 unassigned peptidases MER0355391
SE S12 unassigned family S12 unassigned peptidases MER0171031
SE S12 unassigned family S12 unassigned peptidases MER0353826
SE S12 unassigned family S12 unassigned peptidases MER0356050
SF S24 S24.001 repressor LexA MER0171846
SF S26 unassigned subfamily S26A unassigned peptidases MER0246808
SF S26 unassigned subfamily S26B unassigned peptidases MER1052414
SJ S16 S16.001 Lon-A peptidase MER0167777
SK S14 S14.001 peptidase Clp (type 1) MER0166879
SK S41 non-peptidase homologue subfamily S41A non-peptidase homologues MER1060037
SK S41 unassigned subfamily S41A unassigned peptidases MER0167039
ST S54 unassigned family S54 unassigned peptidases MER1078383
U- U32 unassigned family U32 unassigned peptidases MER0403518
U- U32 unassigned family U32 unassigned peptidases MER0325524
U- U56 unassigned family U56 unassigned peptidases MER0159023

GENOME ANALYSIS: Comparison with 14 completely sequenced genomes from family Erysipelotrichaceae
Family Comment
C110 significant presence (2 homologues)
G5 lineage specific expansion (6 homologues)
M14 significant presence (3 homologues)
M28 significant presence (1 homologues)
M38 lineage specific expansion (17 homologues)
M56 significant presence (8 homologues)
M61 significant presence (1 homologues)
M81 lineage specific expansion (11 homologues)
S9 lineage specific expansion (13 homologues)
S10 significant presence (1 homologues)
S11 lineage specific expansion (4 homologues)
S12 lineage specific expansion (6 homologues)
S15 significant presence (1 homologues)
U56 significant presence (1 homologues)