Parabacteroides merdae

Taxonomy
Taxonomy database identifier: 46503
Superkingdom Bacteria
Phylum Bacteroidetes
Order Bacteriodales
Family Porphyromonadaceae
Genus Parabacteroides
Species merdae
Peptidase View peptidase sequences from Parabacteroides merdae
Count of known and putative peptidases: 71, non-peptidase homologues 22
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
A- A39 non-peptidase homologue family A39 non-peptidase homologues MER1380762
AE A31 unassigned family A31 unassigned peptidases MER0264683 HMPREF1060_00833
CA C1 unassigned subfamily C1A unassigned peptidases MER0106142 PARMER_00273
CA C1 unassigned subfamily C1A unassigned peptidases MER0428497
CA C1 unassigned subfamily C1B unassigned peptidases MER0106141 PARMER_01134
CA C39 C39.001 bacteriocin-processing peptidase MER0399719 HMPREF1060_03303
CD C11 C11.003 PmC11 peptidase (Parabacteroides merdae) MER0199417 PmC11 PARMER_00083
CD C25 C25.004 PG0026 peptidase (Porphyromonas-type) MER0436039
CD C25 unassigned family C25 unassigned peptidases MER0710133 HMPREF1060_01571
CO C40 C40.004 spr peptidase MER0122615 PARMER_03957
CO C40 unassigned family C40 unassigned peptidases MER0723972 HMPREF1060_03627
G- G5 unassigned family G5 unassigned peptidases MER0936552 BN675_00778/HMPREF1060_02/PARMER_03713
G- G5 unassigned family G5 unassigned peptidases MER0910651 HMPREF1060_01687
MA M1 unassigned family M1 unassigned peptidases MER0335133 PARMER_01747
MA M1 unassigned family M1 unassigned peptidases MER0293513 HMPREF1060_00778
MA M3 unassigned subfamily M3A unassigned peptidases MER0108230 PARMER_02353
MA M3 unassigned subfamily M3A unassigned peptidases MER0103313 PARMER_00963
MA M3 unassigned subfamily M3A unassigned peptidases MER0339900 HMPREF1060_02860
MA M13 M13.017 oligopeptidase O (Porphyromonas gingivalis) MER0109034 PARMER_02915
MA M41 unassigned family M41 unassigned peptidases MER0105715 ftsH PARMER_03885
MA M48 M48.022 low osmolarity induced peptidase MER0888203 PARMER_02954
MA M48 unassigned subfamily M48B unassigned peptidases MER0143350 PARMER_01999
MA M48 unassigned subfamily M48C unassigned peptidases MER0889511 HMPREF1060_03765
MA M48 unassigned subfamily M48C unassigned peptidases MER0887659 BN675_02691/HMPREF1060_00077
MA M49 M49.003 dipeptidyl-peptidase IIIB (Bacteroides thetaiotaomicron-type) MER0107863 PARMER_01127
MA M56 unassigned family M56 unassigned peptidases MER0899455 HMPREF1060_01700
MA M56 unassigned family M56 unassigned peptidases MER0933720 BN675_01496/HMPREF1060_01238/PARMER_02
MA M56 unassigned family M56 unassigned peptidases MER0933529 BN675_01597/HMPREF1060_0/PARMER_01906
MA M64 unassigned family M64 unassigned peptidases MER0191120 PARMER_00886
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0166821 PARMER_03709
ME M16 unassigned subfamily M16B unassigned peptidases MER0165726 PARMER_00263
ME M16 unassigned subfamily M16B unassigned peptidases MER0391057 PARMER_02729
ME M16 unassigned family M16 unassigned peptidases MER0392880 PARMER_01745
ME M16 unassigned family M16 unassigned peptidases MER0166820 PARMER_03709
MG M24 non-peptidase homologue subfamily M24B non-peptidase homologues MER0139365 PARMER_01780
MG M24 non-peptidase homologue family M24 non-peptidase homologues MER0483566
MG M24 unassigned subfamily M24A unassigned peptidases MER0139260 PARMER_03756
MG M24 unassigned subfamily M24A unassigned peptidases MER0394158 PARMER_01268
MG M24 unassigned subfamily M24B unassigned peptidases MER0481899
MH M20 M20.003 peptidase T MER0105435 PARMER_02892
MH M20 M20.012 Pep581 peptidase MER0100606 PARMER_03414
MH M20 non-peptidase homologue subfamily M20D non-peptidase homologues MER0847891 BN675_02750/HMPREF1060_01793
MH M20 unassigned subfamily M20A unassigned peptidases MER0851205 PARMER_00224
MH M20 unassigned subfamily M20C unassigned peptidases MER0100607 PARMER_00755
MH M28 non-peptidase homologue family M28 non-peptidase homologues MER0117275 PARMER_01554
MH M28 unassigned subfamily M28A unassigned peptidases MER0100720 PARMER_02491
MH M28 unassigned subfamily M28B unassigned peptidases MER0105988 PARMER_04027
MH M28 unassigned subfamily M28E unassigned peptidases MER0652203
MH M42 non-peptidase homologue family M42 non-peptidase homologues MER0881509 PARMER_01069
MJ M19 unassigned family M19 unassigned peptidases MER0140619 PARMER_01553
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0866161 BN675_02292/hutI
MM M50 unassigned family M50 unassigned peptidases MER0891213 BN675_01872/HMPREF1060_04010/rseP
MO M23 M23.009 Mername-AA292 peptidase MER0140715 PARMER_03309
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0143351 PARMER_01439
MO M23 non-peptidase homologue family M23 non-peptidase homologues MER0479976
MO M23 unassigned subfamily M23B unassigned peptidases MER0189773 PARMER_00752
MO M23 unassigned subfamily M23B unassigned peptidases MER0166557 PARMER_03154
MO M23 unassigned subfamily M23B unassigned peptidases MER0166769 PARMER_03575
MO M23 unassigned subfamily M23B unassigned peptidases MER0189775 PARMER_04118
MU M103 M103.UNW family M103 non-peptidase homologues MER0276829 PARMER_04343
MU M103 M103.UPW family M103 unassigned peptidases MER0144700 PARMER_04344
PA S1 S01.527 pepK (Porphyromonas gingivalis) MER0143463 PARMER_02676
PA S1 unassigned subfamily S1C unassigned peptidases MER0408039 BN675_02902/HMPREF1060_03/PARMER_04265
PA S1 unassigned subfamily S1D unassigned peptidases MER0143163 PARMER_00608
PA S1 unassigned subfamily S1D unassigned peptidases MER1275457
PA S1 unassigned subfamily S1D unassigned peptidases MER0166978 PARMER_03785
PA S46 S46.001 dipeptidyl-peptidase 7 (Porphyromonas gingivalis-type) MER0108962 PARMER_00304
PA S46 S46.002 dipeptidyl-peptidase 11 (Porphyromonas gingivalis-type) MER0109716 PARMER_02946
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0458853
PB C59 unassigned family C59 unassigned peptidases MER0117561 PARMER_00434
PB C69 unassigned family C69 unassigned peptidases MER0144386 PARMER_02364
PB C69 unassigned family C69 unassigned peptidases MER0125374 PARMER_00592
PB C69 unassigned family C69 unassigned peptidases MER0125190 PARMER_00272
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0439144
PC C26 C26.956 carbamyl phosphate synthetase MER0442170
PC C26 C26.957 GMP synthase MER0443379
PC C26 C26.964 CTP synthetase MER0447758
PC C26 C26.965 imidazole glycerol phosphate synthase subunit HisH MER0444783
PC C26 unassigned family C26 unassigned peptidases MER0140620 PARMER_01553
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0142240 PARMER_02925
PC S51 non-peptidase homologue family S51 non-peptidase homologues MER1045655 HMPREF1060_02424
SB S8 unassigned subfamily S8A unassigned peptidases MER0166508 PARMER_03148
SC S9 S09.013 dipeptidyl-peptidase 4 (bacteria-type 2) MER0125275 PARMER_03777
SC S9 S09.013 dipeptidyl-peptidase 4 (bacteria-type 2) MER0136568 PARMER_01283
SC S9 S09.017 prolyl tripeptidyl peptidase MER0122506 HMPREF1060_01998 PARMER_02747
SC S9 S09.075 dipeptidyl-peptidase 5 (Porphyromonas sp.) MER0137231 PARMER_03000
SC S9 non-peptidase homologue subfamily S9D non-peptidase homologues MER0692206 BN675_02609
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0214693 PARMER_00759
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0166398 PARMER_03129
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0166400 PARMER_03129
SC S9 unassigned subfamily S9B unassigned peptidases MER0139262 PARMER_02220
SC S9 unassigned subfamily S9B unassigned peptidases MER0125868 PARMER_01642
SC S9 unassigned subfamily S9B unassigned peptidases MER0998747 BN675_0/HMPREF1060_03042/PARMER_01647
SC S9 unassigned subfamily S9C unassigned peptidases MER0138200 PARMER_03244
SC S9 unassigned subfamily S9C unassigned peptidases MER0126219 PARMER_01851
SC S9 unassigned subfamily S9C unassigned peptidases MER1120564
SC S9 unassigned subfamily S9C unassigned peptidases MER0192599 PARMER_04255
SC S9 unassigned family S9 unassigned peptidases MER0489540
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER1020897 PARMER_02747
SC S28 unassigned family S28 unassigned peptidases MER0107618 PARMER_02755
SC S33 unassigned family S33 unassigned peptidases MER0211655 PARMER_01324
SC S37 non-peptidase homologue family S37 non-peptidase homologues MER1344780
SE S12 unassigned family S12 unassigned peptidases MER0420120
SE S13 unassigned family S13 unassigned peptidases MER0105528 PARMER_00540
SF S26 S26.001 signal peptidase I MER0105362 PARMER_03198
SF S26 S26.001 signal peptidase I MER0287130 HMPREF1060_03004
SF S26 non-peptidase homologue family S26 non-peptidase homologues MER0138810 PARMER_00157
SF S26 unassigned subfamily S26A unassigned peptidases MER0105364 PARMER_00158
SF S26 unassigned subfamily S26A unassigned peptidases MER0419877
SF S26 unassigned subfamily S26B unassigned peptidases MER0105363 PARMER_02313
SF S26 unassigned subfamily S26B unassigned peptidases MER0119940 PARMER_00486
SH S78 unassigned family S78 unassigned peptidases MER1087677 HMPREF1060_01659
SJ S16 non-peptidase homologue family S16 non-peptidase homologues MER1033136 BN675_00796/radA
SJ S16 non-peptidase homologue family S16 non-peptidase homologues MER1030256 HMPREF1060_02113/PARMER_02851
SJ S16 non-peptidase homologue family S16 non-peptidase homologues MER1036157 HMPREF1060_00394
SJ S16 non-peptidase homologue family S16 non-peptidase homologues MER1033208 BN675_01432
SJ S16 unassigned family S16 unassigned peptidases MER0109108 PARMER_03899
SK S14 S14.001 peptidase Clp (type 1) MER0125022 clpP PARMER_03717
SK S14 unassigned family S14 unassigned peptidases MER1015815 HMPREF1060_03392
SK S41 S41.004 C-terminal processing peptidase-3 MER0139851 PARMER_00961
SK S41 S41.004 C-terminal processing peptidase-3 MER0105227 PARMER_00553
SK S41 S41.005 tricorn core peptidase (archaea) MER0117003 PARMER_03138
SK S41 S41.005 tricorn core peptidase (archaea) MER0166459 HMPREF1078_02633
SK S41 non-peptidase homologue subfamily S41A non-peptidase homologues MER1056492 BN675_01/BN675_01564/HMPREF1060_02022/PARMER_02772
SK S41 unassigned subfamily S41A unassigned peptidases MER1052096 HMPREF1060_04077
SK S41 unassigned subfamily S41A unassigned peptidases MER1059602 BN675_02557/PARMER_04213
SK S41 unassigned subfamily S41A unassigned peptidases MER0126074 PARMER_01503
SK S41 unassigned subfamily S41B unassigned peptidases MER0166399 PARMER_03129
SK S49 non-peptidase homologue subfamily S49B non-peptidase homologues MER1067004 PARMER_03998
SK S49 non-peptidase homologue subfamily S49C non-peptidase homologues MER1071744 HMPREF1060_02411
SK S49 unassigned subfamily S49A unassigned peptidases MER1350008
SK S49 unassigned subfamily S49B unassigned peptidases MER0105119 PARMER_00097
SK S49 unassigned subfamily S49C unassigned peptidases MER1071097 BN675_01960/HMPREF1060_03664
ST S54 unassigned family S54 unassigned peptidases MER1077193 PARMER_03225
ST S54 unassigned family S54 unassigned peptidases MER0109823 PARMER_01520
ST S54 unassigned family S54 unassigned peptidases MER1079171 BN675_00643/HMPREF1060_01414
ST S54 unassigned family S54 unassigned peptidases MER1077539 BN675_01259/HMPREF1060_03148/PARMER_0/PARMER_01521
U- U32 U32.001 collagenase (Porphyromonas-type) MER0165628 PARMER_00108
U- U32 U32.003 collagenase (Salmonella-type) MER0139261 PARMER_02990

GENOME ANALYSIS: Comparison with 21 completely sequenced genomes from family Porphyromonadaceae
Family Comment