Ruegeria pomeroyi

Taxonomy
Taxonomy database identifier: 89184
Superkingdom Bacteria
Phylum Proteobacteria
Class Alphaproteobacteria
Order Rhodobacterales
Family Rhodobacteraceae
Genus Silicibacter
Species pomeroyi
Peptidase View peptidase sequences from Ruegeria pomeroyi
Count of known and putative peptidases: 126, non-peptidase homologues 80
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AA A32 A32.002 RC1339 g.p. (Rickettsia conorii) MER0241660 SPO2449
AC A8 unassigned family A8 unassigned peptidases MER0047861 lspA SPO3373
AD A24 unassigned subfamily A24B unassigned peptidases MER0068810 SPO3095
CL C82 C82.003 ykuD transpeptidase MER0174312 SPO0438
CL C82 C82.A01 LdtF protein (Escherichia coli) MER0174304 SPO0031
CL C82 unassigned subfamily C82A unassigned peptidases MER0174305 SPO0075
CL C82 unassigned subfamily C82A unassigned peptidases MER0174362 SPO2205
CO C40 C40.001 dipeptidyl-peptidase VI (bacteria) MER0068826 SPO3718
CO C40 unassigned family C40 unassigned peptidases MER0068790 SPO2251
CO C40 unassigned family C40 unassigned peptidases MER0173331 SPO2729
G- G5 G05.A04 At3g26085 (Arabidopsis thaliana) MER0054701 SPO3816
G- G5 unassigned family G5 unassigned peptidases MER0054699 SPO2334
MA M3 unassigned subfamily M3A unassigned peptidases MER0047824 SPO0414
MA M3 unassigned family M3 unassigned peptidases MER0047831 pepF SPO1413
MA M32 unassigned family M32 unassigned peptidases MER0047834 SPO2053
MA M41 unassigned family M41 unassigned peptidases MER0047854 ftsH SPO3105
MA M48 unassigned subfamily M48C unassigned peptidases MER0047827 SPO0939
MA M48 unassigned subfamily M48C unassigned peptidases MER0047841 SPO2517
MA M48 unassigned family M48 unassigned peptidases MER0047842 SPO2590
MA M56 unassigned family M56 unassigned peptidases MER0047867 SPO0615
MD M15 non-peptidase homologue subfamily M15A non-peptidase homologues MER0068824 SPO3675
MD M15 non-peptidase homologue family M15 non-peptidase homologues MER0068779 SPO1928
MD M74 unassigned family M74 unassigned peptidases MER0047821 mepA SPO0124
MD M74 unassigned family M74 unassigned peptidases MER1263980
ME M16 M16.019 YMXG peptidase MER0047860 SPO3371
ME M16 non-peptidase homologue family M16 non-peptidase homologues MER0047859 SPO3370
ME M16 unassigned subfamily M16B unassigned peptidases MER0047853 SPO3070
MF M17 unassigned family M17 unassigned peptidases MER0047839 pepA SPO2453
MF M17 unassigned family M17 unassigned peptidases MER0047863 SPO3717
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0048082 map SPO3761
MG M24 non-peptidase homologue family M24 non-peptidase homologues MER0047828 SPO1140
MG M24 non-peptidase homologue family M24 non-peptidase homologues MER0068791 SPO2299
MG M24 non-peptidase homologue family M24 non-peptidase homologues MER0068793 SPO2440
MG M24 non-peptidase homologue family M24 non-peptidase homologues MER0068816 SPO3327
MG M24 unassigned subfamily M24B unassigned peptidases MER0068801 SPO2857
MH M20 unassigned subfamily M20A unassigned peptidases MER0047830 SPO1215
MH M20 unassigned subfamily M20A unassigned peptidases MER0047858 dapE SPO3332
MH M20 unassigned subfamily M20A unassigned peptidases MER0047862 argE-2 SPO3676
MH M20 unassigned subfamily M20A unassigned peptidases MER0048420 SPOA0429
MH M20 unassigned subfamily M20B unassigned peptidases MER0047865 pepT SPO3830
MH M20 unassigned family M20D unassigned peptidases MER0047829 SPO1214
MH M20 unassigned family M20D unassigned peptidases MER0047837 SPO2195
MH M20 unassigned family M20D unassigned peptidases MER0047840 SPO2468
MH M20 unassigned family M20D unassigned peptidases MER0047846 SPO2808
MH M20 unassigned family M20D unassigned peptidases MER0047847 SPO2809
MH M20 unassigned family M20D unassigned peptidases MER0047848 SPO2810
MH M20 unassigned family M20D unassigned peptidases MER0047849 SPO2811
MH M20 unassigned subfamily M20F unassigned peptidases MER0047843 SPO2597
MH M20 unassigned family M20 unassigned peptidases MER0174357 SPO1781
MH M20 unassigned family M20 unassigned peptidases MER0047835 SPO2101
MH M20 unassigned family M20 unassigned peptidases MER0047850 argE-1 SPO2812
MJ M19 non-peptidase homologue family M19 non-peptidase homologues MER0068814 SPO3190
MJ M19 unassigned family M19 unassigned peptidases MER0093376 SPO1542
MJ M19 unassigned family M19 unassigned peptidases MER0090989 SPO1410
MJ M19 unassigned family M19 unassigned peptidases MER0089464 SPO1311
MJ M38 M38.982 urease MER0174355 ureC SPO1714
MJ M38 M38.A02 PyrC protein (Escherichia coli) MER0068795 pyrC SPO2653
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0174308 SPO0284
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0174315 SPO0658
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0174352 SPO1605
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0174360 nagA SPO1844
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0068789 hutF SPO2194
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0174364 SPO2529
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0068799 SPO2806
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0174367 SPO2830
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0068803 SPO2956
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0068804 SPO2957
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0068827 ade SPO3746
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0068788 hutI SPO2191
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0874084 SPOA0316
MJ M38 unassigned family M38 unassigned peptidases MER0174358 hydA SPO1783
MM M50 unassigned subfamily M50B unassigned peptidases MER0047832 SPO1636
MM M50 unassigned family M50 unassigned peptidases MER0047833 SPO1668
MM M50 unassigned family M50 unassigned peptidases MER0054700 SPO2714
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0047844 SPO2686
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0047856 SPO3170
MO M23 unassigned subfamily M23B unassigned peptidases MER0047838 SPO2230
MO M23 unassigned family M23 unassigned peptidases MER0047826 SPO0791
MS M75 M75.001 imelysin MER0042593 SPO0086
MT M81 unassigned family M81 unassigned peptidases MER0223227 SPO1209
MU M103 M103.001 TldD peptidase (Escherichia coli) MER0068809 SPO3077
MU M103 M103.UNW family M103 non-peptidase homologues MER0068818 SPO3442
NB N6 unassigned family N6 unassigned peptide lyases MER0405778 flhB SPO0172
PA S1 S01.260 B1598 peptidase MER0068819 SPO3483
PA S1 S01.260 B1598 peptidase MER0063354 SPO3482
PA S1 non-peptidase homologue subfamily S1B non-peptidase homologues MER0174340 SPO1354
PA S1 unassigned subfamily S1B unassigned peptidases MER0068778 SPO1883
PA S1 unassigned subfamily S1B unassigned peptidases MER0048418 SPO2645
PA S1 unassigned subfamily S1B unassigned peptidases MER1269624
PA S1 unassigned subfamily S1B unassigned peptidases MER0068768 SPOA0205
PA S1 unassigned subfamily S1C unassigned peptidases MER0045083 SPO0514
PA S1 unassigned subfamily S1C unassigned peptidases MER0052093 SPO1333
PA S1 unassigned subfamily S1C unassigned peptidases MER0044742 SPO1625
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0052008 purF SPO2677
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0068828 gltB SPO3768
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0048115 glmS SPOA0140
PB C44 unassigned family C44 unassigned peptidases MER0174349 SPO1576
PB C44 unassigned family C44 unassigned peptidases MER0068783 SPO2029
PB C69 non-peptidase homologue family C69 non-peptidase homologues MER0174366 SPO2829
PB S45 S45.003 cephalosporin C acylase precursor MER0068784 SPO2078
PB T1 T01.006 HslV component of HslUV peptidase MER0048419 hslV SPO3880
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0101154 ggt SPO0633
PB T3 T03.014 gamma-glutamyltransferase 2 (bacterial) MER0174321 SPO0866
PB T3 T03.025 oxamate amidohydrolase proenzyme (Klebsiella pneumonia) MER0068817 SPO3411
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0068787 trpG SPO2149
PC C26 C26.964 CTP synthetase MER0174339 pyrG SPO1312
PC C26 C26.965 imidazole glycerol phosphate synthase subunit HisH MER0174328 hisH SPO1162
PC C26 C26.A05 gamma-glutamyl peptidase 1 (Arabidopsis thaliana) MER0174338 SPO1301
PC C26 non-peptidase homologue family C26 non-peptidase homologues MER0174331 cobQ SPO1242
PC C26 non-peptidase homologue family C26 non-peptidase homologues MER0174368 cobB SPO2872
PC C26 unassigned family C26 unassigned peptidases MER0174318 SPO0763
PC C26 unassigned family C26 unassigned peptidases MER0174327 SPO1071
PC C26 unassigned family C26 unassigned peptidases MER0174341 carA SPO1377
PC C26 unassigned family C26 unassigned peptidases MER0068785 guaA SPO2109
PC C26 unassigned family C26 unassigned peptidases MER0068800 SPO2837
PC C26 unassigned family C26 unassigned peptidases MER0068808 SPO3045
PC C56 C56.972 phosphoribosylformylglycinamidine synthase MER0174361 purQ SPO1890
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0174326 SPO1002
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0174344 SPO1399
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0174346 SPO1434
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0174350 SPO1584
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0174354 SPO1704
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0068780 SPO1941
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0068797 SPO2704
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0068812 SPO3150
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0068821 SPO3571
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0068770 SPOA0286
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0068771 SPOA0289
PE P1 P01.101 pantetheinyl hydrolase ThnT precursor MER0047822 SPO0129
PE P1 unassigned family P01 unassigned peptidases MER0047855 SPO3135
PE T5 T05.001 ornithine acetyltransferase precursor MER0117596 argJ SPO0059
SB S8 unassigned subfamily S8A unassigned peptidases MER0174317 SPO0745
SB S8 unassigned subfamily S8A unassigned peptidases MER0068767 SPOA0205
SC S9 S09.A39 YeiG protein (Escherichi coli) MER0068830 SPO3829
SC S9 non-peptidase homologue subfamily S9B non-peptidase homologues MER0996866 SPO2994
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0174314 SPO0508
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0174334 SPO1286
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0068773 SPOA0408
SC S9 unassigned family S9 unassigned peptidases MER0174333 SPO1285
SC S9 unassigned family S9 unassigned peptidases MER0068786 SPO2126
SC S9 unassigned family S9 unassigned peptidases MER0068792 SPO2301
SC S9 unassigned family S9 unassigned peptidases MER0068805 SPO3002
SC S9 unassigned family S9 unassigned peptidases MER0174373 SPO3644
SC S9 unassigned family S9 unassigned peptidases MER0068782 SPO2026 SPO2026
SC S15 unassigned family S15 unassigned peptidases MER0047852 SPO2994
SC S33 S33.001 prolyl aminopeptidase MER0100446 pip SPO0066
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0174306 SPO0112
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0174332 SPO1258
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0174336 phaZ SPO1291
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0174337 phaC SPO1292
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0174342 SPO1388
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0174345 SPO1414
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0174347 SPO1499
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0068813 SPO3157
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0068772 SPOA0376
SC S33 unassigned family S33 unassigned peptidases MER0174316 SPO0733
SC S33 unassigned family S33 unassigned peptidases MER0174322 SPO0877
SC S33 unassigned family S33 unassigned peptidases MER0174323 SPO0885
SC S33 unassigned family S33 unassigned peptidases MER0174335 SPO1289
SC S33 unassigned family S33 unassigned peptidases MER0174356 SPO1728
SC S33 unassigned family S33 unassigned peptidases MER0068798 SPO2710
SC S33 unassigned family S33 unassigned peptidases MER0068802 SPO2943
SC S33 unassigned family S33 unassigned peptidases MER0068820 SPO3544
SC S33 unassigned family S33 unassigned peptidases MER0068825 SPO3698
SC S33 unassigned family S33 unassigned peptidases MER0068829 acoC SPO3790
SC S33 unassigned family S33 unassigned peptidases MER0068831 SPO3831
SC S33 unassigned family S33 unassigned peptidases MER1338310
SC S33 unassigned family S33 unassigned peptidases MER0068769 SPOA0277
SC S33 unassigned family S33 unassigned peptidases MER0068775 SPOA0433
SC S33 unassigned family S33 unassigned peptidases MER0068776 catD SPOA0434
SC S33 unassigned family S33 unassigned peptidases MER0068777 SPOA0436
SC S33 unassigned family S33 unassigned peptidases MER0068807 SPO3024
SE S11 unassigned family S11 unassigned peptidases MER0047845 SPO2739
SE S11 unassigned family S11 unassigned peptidases MER0052094 SPO3658
SE S12 S12.950 esterase EstB MER0173283 SPO1641
SE S12 S12.950 esterase EstB MER0068781 SPO1960
SE S12 unassigned family S12 unassigned peptidases MER0174319 SPO0810
SE S12 unassigned family S12 unassigned peptidases MER0118139 SPO1394
SE S12 unassigned family S12 unassigned peptidases MER0068796 SPO2696
SE S12 unassigned family S12 unassigned peptidases MER0068822 SPO3636
SE S13 unassigned family S13 unassigned peptidases MER0047825 dacB SPO0451
SF S24 S24.001 repressor LexA MER0047836 lexA SPO2154
SF S26 S26.001 signal peptidase I MER0047857 lepB SPO3199
SH S78 S78.001 prohead peptidase (bacteriophage HK97) MER0048416 SPO2262
SJ S16 S16.001 Lon-A peptidase MER0048417 lon SPO2613
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0048096 radA SPO2674
SJ S16 non-peptidase homologue family S16 non-peptidase homologues MER0174311 comM SPO0402
SK S14 S14.001 peptidase Clp (type 1) MER0048114 clpP SPO1003
SK S41 S41.004 C-terminal processing peptidase-3 MER0062291 SPO3812
SK S49 unassigned subfamily S49C unassigned peptidases MER0063615 SPO3640
ST S54 S54.027 RhoII peptidase (Haloferax volcanii) and similar MER0068806 SPO3011
ST S54 non-peptidase homologue family S54 non-peptidase homologues MER0174310 SPO0393

GENOME ANALYSIS: Comparison with 100 completely sequenced genomes from family Rhodobacteraceae
Family Comment
C56 lineage specific expansion (12 homologues)
C69 significant presence (1 homologues)
M38 lineage specific expansion (16 homologues)
S12 lineage specific expansion (6 homologues)