Nocardia farcinica

Taxonomy
Taxonomy database identifier: 37329
Superkingdom Bacteria
Phylum Firmicutes
Class Actinobacteria
Subclass Actinobacteridae
Order Actinomycetales
Suborder Corynebacterineae
Family Nocardiaceae
Genus Nocardia
Species farcinica
Peptidase View peptidase sequences from Nocardia farcinica
Count of known and putative peptidases: 170, non-peptidase homologues 46
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AC A8 A08.001 signal peptidase II MER0055215 lspA2 PNF1_340
AC A8 A08.001 signal peptidase II MER0041157 lspA NFA_17880
AD A24 unassigned subfamily A24A unassigned peptidases MER0041158 NFA_36340
CL C82 unassigned subfamily C82A unassigned peptidases MER0122904 NFA_34280
CL C82 unassigned subfamily C82A unassigned peptidases MER0463368 NFA_12820
CL C82 unassigned subfamily C82A unassigned peptidases MER0461829 NFA_56390
CO C40 C40.005 PgdS peptidase MER0094387 NFA_36700
CO C40 C40.007 YddH peptidase MER0041163 NFA_17200
CO C40 C40.007 YddH peptidase MER0041164 NFA_17770
CO C40 unassigned family C40 unassigned peptidases MER0041165 NFA_9570
CO C40 unassigned family C40 unassigned peptidases MER0041168 NFA_17210
CO C40 unassigned family C40 unassigned peptidases MER0041166 inv NFA_34810
CO C40 unassigned family C40 unassigned peptidases MER0041167 NFA_55950
CO C40 unassigned family C40 unassigned peptidases MER0180749 PNF1_1500
M- M79 unassigned family M79 unassigned peptidases MER0911387 NFA_7470
M- M79 unassigned family M79 unassigned peptidases MER0912792 NFA_5750
MA M1 M01.009 aminopeptidase N (actinomycete-type) MER0041184 NFA_13180
MA M1 M01.033 lysyl endopeptidase (Streptomyces albulus) MER0041186 NFA_3780
MA M1 unassigned family M1 unassigned peptidases MER0041185 NFA_6320
MA M3 M03.005 peptidyl-dipeptidase Dcp MER0041995 NFA_20170
MA M10 unassigned subfamily M10B unassigned peptidases MER0467416 NFA_20310
MA M13 M13.009 Zmp1 peptidase (Mycobacterium-type) MER0041187 NFA_22800
MA M13 M13.009 Zmp1 peptidase (Mycobacterium-type) MER0041188 NFA_56400
MA M41 M41.015 Mername-AA223 peptidase MER0042330 ftsH NFA_3980
MA M48 M48.004 HtpX-2 peptidase MER0042363 htpX NFA_51210
MA M48 unassigned subfamily M48B unassigned peptidases MER0888465 PNF1_520
MA M56 unassigned family M56 unassigned peptidases MER0042484 NFA_25170
MD M15 M15.002 DD-carboxypeptidase pdcA (Myxococcus-type) MER0469715 NFA_32010
ME M16 M16.A15 BSSC8_26020 g.p. (Bacillus subtilis) MER0041189 NFA_38860
MF M17 unassigned family M17 unassigned peptidases MER0041190 pepA NFA_16920
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0042240 map NFA_40890
MG M24 M24.034 PH0974 dipeptidase MER0041199 NFA_31590
MG M24 unassigned subfamily M24A unassigned peptidases MER0042238 NFA_7960
MG M24 unassigned subfamily M24A unassigned peptidases MER0042239 NFA_31320
MG M24 unassigned subfamily M24B unassigned peptidases MER0041198 NFA_36330
MH M18 M18.002 aspartyl aminopeptidase MER0041191 apeB NFA_5710
MH M20 M20.001 glutamate carboxypeptidase MER0041194 NFA_24270
MH M20 M20.011 carboxypeptidase PM20D1 MER0041195 NFA_16660
MH M20 M20.974 acetylornithine deacetylase ArgE MER0042627 NFA_29100
MH M20 M20.974 acetylornithine deacetylase ArgE MER0041192 dapE NFA_47410
MH M20 non-peptidase homologue subfamily M20D non-peptidase homologues MER0042640 NFA_9630
MH M20 non-peptidase homologue subfamily M20D non-peptidase homologues MER0042645 NFA_9650
MH M20 unassigned subfamily M20F unassigned peptidases MER0041193 NFA_5650
MH M20 unassigned family M20 unassigned peptidases MER0042635 NFA_21000
MJ M19 non-peptidase homologue family M19 non-peptidase homologues MER0038260 NFA_52680
MJ M38 M38.982 urease MER0042299 ureC NFA_25260
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0042288 NFA_36220
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0042744 NFA_45100
MJ M38 unassigned family M38 unassigned peptidases MER0042781 hutI NFA_12340
MJ M38 unassigned family M38 unassigned peptidases MER0042782 NFA_26460
MJ M38 unassigned family M38 unassigned peptidases MER0042783 NFA_31190
MJ M38 unassigned family M38 unassigned peptidases MER0038257 NFA_41590
MJ M38 unassigned family M38 unassigned peptidases MER0042784 NFA_52410
MM M50 M50.005 protein Rv2869c (Mycobacterium tuberculosis)-type peptidase MER0042463 NFA_41190
MM M50 unassigned subfamily M50B unassigned peptidases MER0042464 NFA_53750
MO M23 unassigned subfamily M23B unassigned peptidases MER0042187 NFA_36700
MO M23 unassigned subfamily M23B unassigned peptidases MER0042184 NFA_5560
MO M23 unassigned subfamily M23B unassigned peptidases MER0042185 NFA_7160
MO M23 unassigned subfamily M23B unassigned peptidases MER0042186 NFA_31110
MO M23 unassigned subfamily M23B unassigned peptidases MER0042188 NFA_49920
MO M23 unassigned subfamily M23B unassigned peptidases MER0055216 PNF1_470
MP M67 unassigned subfamily M67A unassigned peptidases MER0907796 NFA_10890
PA S1 S01.494 Htra2 peptidase (Mycobacterium-type) MER0041200 NFA_49620
PA S1 S01.513 MarP peptidase (Mycobacterium tuberculosis) MER0041203 NFA_3510
PA S1 unassigned subfamily S1C unassigned peptidases MER0041201 NFA_47310
PA S1 unassigned subfamily S1C unassigned peptidases MER0041202 NFA_52250
PA S1 unassigned subfamily S1E unassigned peptidases MER0041204 NFA_54170
PA S1 unassigned family S1 unassigned peptidases MER0038302 NFA_20300
PB C44 C44.003 glutamate synthase (NADPH) large chain MER0458606 gltB NFA_960
PB C44 C44.A02 At4g38880 (Arabidopsis thaliana) MER0038384 purF NFA_5790
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0041887 glmS NFA_8760
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0039099 NFA_21030
PB C44 unassigned family C44 unassigned peptidases MER0041924 ltsA NFA_17070
PB C44 unassigned family C44 unassigned peptidases MER0041169 NFA_29020
PB C44 unassigned family C44 unassigned peptidases MER0041957 NFA_30950
PB C44 unassigned family C44 unassigned peptidases MER0041925 NFA_48850
PB T1 T01.005 bacterial proteasome, beta component MER0042512 prcB NFA_31720
PB T1 T01.980 bacterial proteasome, alpha subunit MER0037026 prcA NFA_31710
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0041292 ggt NFA_35970
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0041161 pabA NFA_770
PC C26 C26.A07 At1g63660 (Arabidopsis thaliana) MER0041159 guaA NFA_8970
PC C26 C26.A25 trp1 (Schizosaccharomyces pombe) MER0041160 pabB NFA_16010
PC C26 C26.A32 imidazoleglycerol-phosphate synthase (Pyrococcus furiosus) MER0451317 pdxT NFA_37030
PC C26 unassigned family C26 unassigned peptidases MER0180593 purQ NFA_5680
PC C26 unassigned family C26 unassigned peptidases MER0041162 carA NFA_36200
PC C56 C56.001 PfpI peptidase MER0041182 NFA_43610
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0041181 NFA_5050
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0041178 NFA_9250
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0041172 NFA_17020
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0041177 NFA_23030
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0041179 NFA_23690
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0180643 katB NFA_27070
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0041173 NFA_27970
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0041170 NFA_32220
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0041175 NFA_50430
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0041171 NFA_53470
PC C56 unassigned family C56 unassigned peptidases MER0041180 NFA_15880
PC S51 non-peptidase homologue family S51 non-peptidase homologues MER0041289 NFA_10100
PC S51 unassigned family S51 unassigned peptidases MER1047997 NFA_19440
PD N10 N10.002 intein-containing replicative DNA helicase precursor MER0189827 dnaB NFA_55760
PE P1 P01.101 pantetheinyl hydrolase ThnT precursor MER0042507 NFA_10880
PE T5 unassigned family T5 unassigned peptidases MER0042558 argJ NFA_19370
SB S8 S08.131 mycosin-1 MER0041206 NFA_8280
SB S8 S08.131 mycosin-1 MER0041205 NFA_8490
SB S8 unassigned subfamily S8A unassigned peptidases MER0041207 NFA_20290
SC S9 S09.010 oligopeptidase B MER0041208 NFA_5630
SC S9 S09.948 para-nitrobenzyl esterase (Bacillus subtilis) MER0041222 NFA_50190
SC S9 S09.958 hypothetical protein flj40219 MER0041214 NFA_52210
SC S9 S09.993 hormone-sensitive lipase MER0041220 NFA_12790
SC S9 S09.993 hormone-sensitive lipase MER0041212 NFA_21210
SC S9 S09.993 hormone-sensitive lipase MER0041217 NFA_40960
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0211280 fbpA NFA_1810
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0210614 fbpB NFA_1820
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0211245 NFA_5610
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0209551 NFA_7210
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0213832 NFA_45560
SC S9 non-peptidase homologue family S9 non-peptidase homologues MER0041211 NFA_47030
SC S9 unassigned subfamily S9A unassigned peptidases MER0041215 NFA_52690
SC S9 unassigned subfamily S9B unassigned peptidases MER0041224 NFA_49400
SC S9 unassigned subfamily S9C unassigned peptidases MER0041218 NFA_23150
SC S9 unassigned subfamily S9C unassigned peptidases MER0041225 NFA_32620
SC S9 unassigned family S9 unassigned peptidases MER0041213 NFA_2080
SC S9 unassigned family S9 unassigned peptidases MER0042812 NFA_6960
SC S9 unassigned family S9 unassigned peptidases MER0041223 NFA_16430
SC S9 unassigned family S9 unassigned peptidases MER0041219 NFA_24190
SC S9 unassigned family S9 unassigned peptidases MER0041216 NFA_33760
SC S9 unassigned family S9 unassigned peptidases MER0041221 NFA_33850
SC S9 unassigned family S9 unassigned peptidases MER0041209 NFA_46420
SC S9 unassigned family S9 unassigned peptidases MER0041210 NFA_52740
SC S15 non-peptidase homologue family S15 non-peptidase homologues MER1026553 NFA_6960
SC S15 unassigned family S15 unassigned peptidases MER0055213 NFA_51880
SC S15 unassigned family S15 unassigned peptidases MER1021701 NFA_43000
SC S15 unassigned family S15 unassigned peptidases MER0042667 NFA_34950
SC S33 S33.001 prolyl aminopeptidase MER0041250 NFA_16480
SC S33 S33.010 SCO7095-type peptidase MER0041287 NFA_20360
SC S33 S33.016 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (Burkholderia-type) MER0041255 NFA_4730
SC S33 S33.023 Hip1 peptidase (Mycobacterium tuberculosis) MER0041251 NFA_16590
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0041266 NFA_50
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0041262 NFA_3520
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0041254 NFA_9070
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0041257 NFA_14500
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0041263 NFA_15830
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0041260 NFA_26230
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0041253 NFA_27410
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0038373 NFA_35810
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0041252 NFA_45400
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0041267 NFA_49260
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0042821 NFA_52190
SC S33 unassigned family S33 unassigned peptidases MER0042813 NFA_42390 NFA_42390
SC S33 unassigned family S33 unassigned peptidases MER0041270 NFA_3100
SC S33 unassigned family S33 unassigned peptidases MER0038142 NFA_3710
SC S33 unassigned family S33 unassigned peptidases MER0041284 NFA_3750
SC S33 unassigned family S33 unassigned peptidases MER0041265 NFA_4280
SC S33 unassigned family S33 unassigned peptidases MER0041278 NFA_5490
SC S33 unassigned family S33 unassigned peptidases MER0041269 NFA_8800
SC S33 unassigned family S33 unassigned peptidases MER0041272 metX NFA_9220
SC S33 unassigned family S33 unassigned peptidases MER0041271 NFA_9300
SC S33 unassigned family S33 unassigned peptidases MER0041273 NFA_15720
SC S33 unassigned family S33 unassigned peptidases MER0041275 NFA_16080
SC S33 unassigned family S33 unassigned peptidases MER0041288 NFA_16650
SC S33 unassigned family S33 unassigned peptidases MER0213616 NFA_25520
SC S33 unassigned family S33 unassigned peptidases MER0038251 NFA_26540
SC S33 unassigned family S33 unassigned peptidases MER0041277 NFA_27600
SC S33 unassigned family S33 unassigned peptidases MER0041276 NFA_28260
SC S33 unassigned family S33 unassigned peptidases MER0041281 NFA_29640
SC S33 unassigned family S33 unassigned peptidases MER0041268 NFA_32200
SC S33 unassigned family S33 unassigned peptidases MER0210714 NFA_32210
SC S33 unassigned family S33 unassigned peptidases MER0042716 NFA_32700
SC S33 unassigned family S33 unassigned peptidases MER0041283 NFA_32880
SC S33 unassigned family S33 unassigned peptidases MER0041282 NFA_35240
SC S33 unassigned family S33 unassigned peptidases MER0042820 NFA_40860
SC S33 unassigned family S33 unassigned peptidases MER0041261 NFA_40940
SC S33 unassigned family S33 unassigned peptidases MER0041264 NFA_41980
SC S33 unassigned family S33 unassigned peptidases MER0038359 NFA_43030
SC S33 unassigned family S33 unassigned peptidases MER0041274 NFA_44130
SC S33 unassigned family S33 unassigned peptidases MER0041259 NFA_45210
SC S33 unassigned family S33 unassigned peptidases MER0042717 NFA_45720
SC S33 unassigned family S33 unassigned peptidases MER0038343 NFA_46770
SC S33 unassigned family S33 unassigned peptidases MER0041256 NFA_50740
SC S33 unassigned family S33 unassigned peptidases MER0041279 NFA_51930
SC S33 unassigned family S33 unassigned peptidases MER0041285 NFA_52060
SC S33 unassigned family S33 unassigned peptidases MER0038357 NFA_52700
SC S33 unassigned family S33 unassigned peptidases MER0211603 NFA_53690
SC S33 unassigned family S33 unassigned peptidases MER0041286 NFA_54420
SC S33 unassigned family S33 unassigned peptidases MER0041280 NFA_55080
SE S11 unassigned family S11 unassigned peptidases MER0041226 NFA_9380
SE S12 S12.003 alkaline D-peptidase MER0041235 NFA_13570
SE S12 S12.A11 lact-2 g.p. (Caenorhabditis elegans) MER0041232 NFA_14670
SE S12 S12.A11 lact-2 g.p. (Caenorhabditis elegans) MER0041229 NFA_18060
SE S12 S12.A11 lact-2 g.p. (Caenorhabditis elegans) MER0041236 NFA_19770
SE S12 S12.A23 GYO_0385 g.p. (Bacillus subtilis) MER0041231 NFA_3230
SE S12 S12.A23 GYO_0385 g.p. (Bacillus subtilis) MER0041233 NFA_48450
SE S12 unassigned family S12 unassigned peptidases MER0041230 NFA_4980
SE S12 unassigned family S12 unassigned peptidases MER0041237 NFA_16050
SE S12 unassigned family S12 unassigned peptidases MER0041228 NFA_22140
SE S12 unassigned family S12 unassigned peptidases MER0041234 NFA_29370
SE S12 unassigned family S12 unassigned peptidases MER0041227 NFA_48460
SE S13 S13.004 penillin-binding protein 4 MER0041238 NFA_3860
SF S24 S24.001 repressor LexA MER0041247 lexA2 NFA_38000
SF S24 S24.001 repressor LexA MER0041248 lexA1 NFA_52180
SF S26 S26.024 signal peptidase (Mycobacterium tuberculosis-type) MER0041249 NFA_41460
SH S78 S78.001 prohead peptidase (bacteriophage HK97) MER0041293 NFA_420
SJ S16 S16.012 SepM peptidase (Streptococcus mutans) MER0041245 NFA_45280
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0041244 sms NFA_4320
SJ S16 unassigned family S16 unassigned peptidases MER0041246 NFA_56180
SK S14 S14.008 ClpP1 peptidase (Streptomyces-type) MER0041239 clpP2 NFA_13330
SK S14 S14.009 ClpP2 peptidase (Streptomyces-type) MER0041242 clpP1 NFA_11720
SK S14 S14.009 ClpP2 peptidase (Streptomyces-type) MER0041241 clpP3 NFA_13340
SK S14 unassigned family S14 unassigned peptidases MER0041240 clp3 NFA_11710
ST S54 S54.029 rhomboid peptidase 2 (Mycobacterium sp.) MER0041291 NFA_10930
ST S54 S54.A08 At1g25290 (Arabidopsis thaliana) MER0041290 NFA_740
U- U56 U56.001 homomultimeric peptidase MER0140116 NFA_50260
U- U62 unassigned family U62 unassigned peptidases MER0041294 tldD NFA_31260
U- U62 unassigned family U62 unassigned peptidases MER0041295 NFA_31270
U- U72 U72.001 Dop isopeptidase MER0398061
U- U72 unassigned family U72 unassigned peptidases MER0402759

GENOME ANALYSIS: Comparison with 24 completely sequenced genomes from family Nocardiaceae
Family Comment
C26 significant decrease in homologues (6 homologues)
M3 significant presence (1 homologues)
M10 significant presence (1 homologues)
M56 significant presence (1 homologues)
N10 significant presence (1 homologues)
S11 significant decrease in homologues (1 homologues)