Shewanella oneidensis

Taxonomy
Taxonomy database identifier: 70863
Superkingdom Bacteria
Phylum Proteobacteria
Class Gammaproteobacteria
Order Alteromonadales
Family Alteromonadaceae
Genus Shewanella
Species oneidensis
Peptidase View peptidase sequences from Shewanella oneidensis
Count of known and putative peptidases: 130, non-peptidase homologues 28
Completely sequences genomes from subspecies and strains Protein coding genes

To show all strains with completely sequenced genomes, click here.

Clan Family MEROPS ID Peptidase or homologue (subtype) MERNUM Gene Link Locus Megabases
AC A8 A08.001 signal peptidase II MER0022615 lspA SO_3531
AD A24 A24.001 type 4 prepilin peptidase 1 MER0022606 pilD SO_0414
AE A31 unassigned family A31 unassigned peptidases MER0022628 SO_2096
CA C39 C39.005 colicin V processing peptidase MER0022641 SO_A0049
CA C51 unassigned family C51 unassigned peptidases MER0241472 SO_4418
CA C93 unassigned family C93 unassigned peptidases MER0394843 SO_4322
CF C15 non-peptidase homologue family C15 non-peptidase homologues MER0697158 SO_0835
CL C60 unassigned subfamily C60A unassigned peptidases MER0034310 SO_2196
CL C82 C82.A01 LdtF protein (Escherichia coli) MER0244146 SO_2183
CL C82 unassigned subfamily C82B unassigned peptidases MER0461265 ybiS SO_3748
CO C40 C40.004 spr peptidase MER0022365 SO_0061
MA M2 unassigned family M2 unassigned peptidases MER0022576 SO_2494
MA M3 M03.004 oligopeptidase A MER0022569 prlC SO_4699
MA M3 unassigned subfamily M3A unassigned peptidases MER0022567 dcp-2 SO_3564
MA M3 unassigned subfamily M3A unassigned peptidases MER0022568 dcp-1 SO_3142
MA M6 unassigned family M6 unassigned peptidases MER0022586 SO_0130
MA M9 unassigned subfamily M9A unassigned peptidases MER0022565 SO_0639
MA M13 unassigned family M13 unassigned peptidases MER0022373 SO_3844
MA M13 unassigned family M13 unassigned peptidases MER0022369 SO_0491
MA M13 unassigned family M13 unassigned peptidases MER0022376 SO_0429
MA M32 unassigned family M32 unassigned peptidases MER0022591 SO_1375
MA M41 M41.001 FtsH peptidase MER0022571 ftsH SO_1197
MA M48 M48.002 HtpX peptidase MER0022611 htpX SO_2728
MA M48 M48.023 BepA (Escherichia coli) MER0034317 SO_2869
MA M48 unassigned subfamily M48C unassigned peptidases MER0034306 SO_1137
MA M48 unassigned family M48 unassigned peptidases MER0062404 SO_0110
MA M61 M61.002 BcepAP aminopeptidase (Burkholderia cepacia) MER0022589 SO_2724 SO_2724
MA M88 unassigned family M88 non-peptidase homologues MER0185636 SO_0440
MA M90 unassigned family M90 unassigned peptidases MER0228771 SO_3335
MC M14 non-peptidase homologue family M14 non-peptidase homologues MER0468906 SO_0152
MC M14 unassigned subfamily M14A unassigned peptidases MER0038687 SO_2424 SO_2424
MC M14 unassigned subfamily M14B unassigned peptidases MER0038672 SO_1975
MC M14 unassigned family M14 unassigned peptidases MER0038629 SO_0152
MD M15 non-peptidase homologue subfamily M15A non-peptidase homologues MER0043726 SO_2110
MD M15 unassigned subfamily M15B unassigned peptidases MER0034312 SO_2472
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0919936 SO_3750
ME M16 non-peptidase homologue subfamily M16B non-peptidase homologues MER0925896 SO_4538
ME M16 unassigned subfamily M16A unassigned peptidases MER0022364 SO_3083
ME M16 unassigned subfamily M16B unassigned peptidases MER0056098 SO_4811
ME M16 unassigned subfamily M16B unassigned peptidases MER0022351 SO_4022 SO_4022
ME M16 unassigned subfamily M16B unassigned peptidases MER0022350 SO_3560 SO_3560
MF M17 M17.003 PepA aminopeptidase MER0022588 pepA2 SO_1368
MF M17 M17.004 PepB aminopeptidase MER0022595 pepB SO_0876
MF M17 unassigned family M17 unassigned peptidases MER0022587 pepA1 SO_0959
MF M17 unassigned family M17 unassigned peptidases MER0022590 SO_1117
MG M24 M24.001 methionyl aminopeptidase 1 (Escherichia-type) MER0022356 map SO_1627
MG M24 M24.003 Xaa-Pro dipeptidase (bacteria-type) MER0022593 pepQ SO_0022
MG M24 unassigned subfamily M24B unassigned peptidases MER0029925 SO_1388
MH M20 M20.007 Xaa-His dipeptidase MER0022355 pepD SO_1115
MH M20 unassigned subfamily M20A unassigned peptidases MER0022357 dapE SO_2471
MH M28 unassigned subfamily M28D unassigned peptidases MER0022592 SO_3539
MH M28 unassigned subfamily M28E unassigned peptidases MER0022584 SO_2766
MH M28 unassigned subfamily M28F unassigned peptidases MER0022610 SO_4032 SO_4032
MH M28 unassigned family M28 unassigned peptidases MER0022585 SO_2198
MJ M19 non-peptidase homologue family M19 non-peptidase homologues MER0022637 SO_3791
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0043729 nagA SO_3505
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER1123169 SO_3149
MJ M38 non-peptidase homologue family M38 non-peptidase homologues MER0869393 SO_3148
MJ M38 unassigned family M38 unassigned peptidases MER0043724 hutI SO_0095
MJ M38 unassigned family M38 unassigned peptidases MER0029926 SO_0990
MM M50 unassigned subfamily M50B unassigned peptidases MER0022603 SO_0823
MM M50 unassigned subfamily M50B unassigned peptidases MER0034307 SO_1636
MO M23 M23.011 YebA peptidase MER0022634 SO_2842
MO M23 M23.014 ShyA D,D-endopeptidase (Vibrio cholerae) MER0022632 SO_1314
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0022629 nlpD SO_3433
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0022630 SO_2180
MO M23 non-peptidase homologue subfamily M23B non-peptidase homologues MER0034303 SO_0048
MO M23 unassigned subfamily M23B unassigned peptidases MER0022631 SO_4212
MO M23 unassigned subfamily M23B unassigned peptidases MER0022633 SO_4420
MP M67 non-peptidase homologue subfamily M67B non-peptidase homologues MER0907768 K
MU M103 M103.001 TldD peptidase (Escherichia coli) MER0022623 tldD SO_4091
MU M103 M103.950 microcin-processing peptidase 1 homologue MER0022624 pmbA SO_4078
NB N6 N06.A01 FlhB protein (Escherichia coli) MER0405601 flhB SO_3215
PA S1 S01.275 DegS peptidase MER0022621 degS SO_3943
PA S1 unassigned subfamily S1C unassigned peptidases MER0022618 degQ SO_3942
PA S46 S46.003 dipeptidyl-peptidase BII (Pseudoxanthomonas mexicana) MER0026109 SO_1075
PA S46 S46.003 dipeptidyl-peptidase BII (Pseudoxanthomonas mexicana) MER0026110 SO_3918
PB C44 C44.001 amidophosphoribosyltransferase precursor MER0022597 purF SO_3064
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0022600 glmS SO_4741
PB C44 non-peptidase homologue family C44 non-peptidase homologues MER0034300 asnB-1 SO_2767
PB C44 unassigned family C44 unassigned peptidases MER0022598 SO_2535
PB C44 unassigned family C44 unassigned peptidases MER0034301 asnB-2 SO_3175
PB S45 S45.004 acyl-homoserine lactone acylase MER0034299 aac SO_0918
PB T1 T01.006 HslV component of HslUV peptidase MER0022599 hslV SO_4162
PB T2 unassigned family T2 unassigned peptidases MER0022601 SO_2115
PB T3 T03.001 gamma-glutamyltransferase 1 (bacterial-type) MER0022574 ggt-2 SO_1952
PB T3 T03.025 oxamate amidohydrolase proenzyme (Klebsiella pneumonia) MER0022577 ggt-1 SO_0741
PC C26 C26.955 aminodeoxychorismate synthase, subunit II MER0043725 pabA SO_0613
PC C26 C26.960 TrpD protein (anthranilate synthase component II) MER0043727 trpG SO_3020
PC C26 C26.961 PuuD protein MER0031273 SO_1267
PC C56 C56.A06 DDB_G0276405 (Dictyostelium discoideum) MER0022614 SO_1378
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0031399 SO_4589
PC C56 non-peptidase homologue family C56 non-peptidase homologues MER0031400 SO_1887
PC S51 S51.001 dipeptidase E MER0022613 pepE SO_2730
S- S85 unassigned family S85 unassigned peptidases MER1123983 SO_3370
SB S8 unassigned subfamily S8A unassigned peptidases MER0025164 SO_4539
SB S8 unassigned subfamily S8A unassigned peptidases MER0022594 SO_1915
SB S8 unassigned subfamily S8A unassigned peptidases MER0022596 SO_3302
SB S8 unassigned subfamily S8A unassigned peptidases MER0022605 SO_3800
SB S8 unassigned subfamily S8A unassigned peptidases MER0022607 aprE SO_3106
SB S8 unassigned subfamily S8A unassigned peptidases MER0022609 SO_0867
SB S8 unassigned subfamily S8A unassigned peptidases MER0022602 SO_0187
SC S9 S09.010 oligopeptidase B MER0022371 ptrB SO_0144
SC S9 S09.021 glutamyl endopeptidase C MER0022361 SO_1310
SC S9 S09.074 tyrosyl aminopeptidase (Raphanus-type) MER0022375 SO_1686
SC S9 S09.A40 YqiA protein (Escherichi coli) MER0214346 SO_3900
SC S9 S09.A77 dpf-6 g.p. (Caenorhabditis elegans) MER0022639 SO_A0048
SC S9 unassigned subfamily S9A unassigned peptidases MER0022366 dpp4 SO_3990
SC S9 unassigned subfamily S9A unassigned peptidases MER0022367 SO_2753
SC S9 unassigned subfamily S9A unassigned peptidases MER0022368 SO_2047
SC S9 unassigned subfamily S9B unassigned peptidases MER0999983 frmB
SC S9 unassigned subfamily S9B unassigned peptidases MER0022359 SO_0614 SO_0614
SC S9 unassigned subfamily S9D unassigned peptidases MER0022566 SO_4618 SO_4618
SC S9 unassigned subfamily S9D unassigned peptidases MER0022372 SO_4537 SO_4537
SC S9 unassigned subfamily S9D unassigned peptidases MER0022374 SO_4252 SO_4252
SC S9 unassigned subfamily S9D unassigned peptidases MER0022370 SO_2223 SO_2223
SC S9 unassigned family S9 unassigned peptidases MER0028376 SO_1539
SC S9 unassigned family S9 unassigned peptidases MER0997121 frmB
SC S9 unassigned family S9 unassigned peptidases MER0034305 SO_0801
SC S33 S33.001 prolyl aminopeptidase MER0022616 SO_4400
SC S33 S33.010 SCO7095-type peptidase MER0043730 lypA SO_4733
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0022349 SO_1743
SC S33 non-peptidase homologue family S33 non-peptidase homologues MER0215467 SO_2024
SC S33 unassigned family S33 unassigned peptidases MER0043723 SO_0071
SC S33 unassigned family S33 unassigned peptidases MER0034302 bioH SO_4626
SC S33 unassigned family S33 unassigned peptidases MER0034318 SO_4574
SC S33 unassigned family S33 unassigned peptidases MER0039320 pip SO_3055
SC S33 unassigned family S33 unassigned peptidases MER0034315 SO_2582
SC S33 unassigned family S33 unassigned peptidases MER0034313 SO_2473
SC S33 unassigned family S33 unassigned peptidases MER0034311 SO_2333
SE S11 S11.002 murein-DD-endopeptidase MER0022354 pbpG SO_0999
SE S11 unassigned family S11 unassigned peptidases MER0022363 dacA-1 SO_1164
SE S12 S12.006 class C beta-lactamase MER0022622 SO_2388
SE S12 unassigned family S12 unassigned peptidases MER0022620 SO_0914
SE S13 S13.001 D-Ala-D-Ala peptidase C MER0022353 dacB SO_2394
SF S24 S24.001 repressor LexA MER0022612 lexA SO_4603
SF S24 S24.003 UmuD protein MER0022638 rulA SO_A0013
SF S24 unassigned family S24 unassigned peptidases MER0039307 SO_2990
SF S24 unassigned family S24 unassigned peptidases MER0034316 SO_2652
SF S24 unassigned family S24 unassigned peptidases MER0034304 SO_0641
SF S26 S26.001 signal peptidase I MER0022352 lepB SO_1347
SF S26 S26.026 PA1303 peptidase (Pseudomonas sp.) MER0022575 SO_2924
SJ S16 S16.001 Lon-A peptidase MER0022360 lon SO_1796
SJ S16 S16.A04 DNA repair protein RadA (Escherichia coli) MER0026108 radA SO_1226
SJ S16 S16.A10 ycbZ (Escherichia coli) MER0034309 SO_1857
SJ S16 unassigned family S16 unassigned peptidases MER0022362 SO_3391
SK S14 S14.001 peptidase Clp (type 1) MER0022619 clpP SO_1794
SK S14 non-peptidase homologue family S14 non-peptidase homologues MER0022617 SO_2964
SK S41 S41.001 C-terminal processing peptidase-1 MER0022570 SO_2601
SK S41 S41.004 C-terminal processing peptidase-3 MER0022583 SO_0047
SK S41 non-peptidase homologue subfamily S41B non-peptidase homologues MER0076152 SO_3411
SK S49 unassigned subfamily S49B unassigned peptidases MER0022604 SO_2933
SK S49 unassigned subfamily S49B unassigned peptidases MER0022572 sppA SO_2420
ST S54 S54.016 GlpG peptidase (Escherichia-type) MER0022608 glpG SO_4671
ST S54 unassigned family S54 unassigned peptidases MER0022573 SO_1000
ST S54 unassigned family S54 unassigned peptidases MER0034314 SO_2504
U- U32 U32.002 collagenase (Helicobacter-type) MER0022625 SO_1252
U- U32 U32.003 collagenase (Salmonella-type) MER0022627 SO_3797
U- U32 U32.A01 YhbV protein (Escherichia coli) MER0039189 SO_1248
U- U32 unassigned family U32 unassigned peptidases MER0022626 SO_1249

GENOME ANALYSIS: Comparison with 24 completely sequenced genomes from genus Shewanella
Family Comment
C26 significant decrease in homologues (3 homologues)
M20 significant decrease in homologues (2 homologues)
S85 significant presence (1 homologues)