Multiple Sequence Alignment

The multiple alignment tool allows to display single locus alignments, as well as inter- and intra- species loci alignments from all groups within the IPD-NHKIR Database. This is achieved by a hybrid approach that combines precomputed alignments of single loci with dynamic inter- and intra- species sequence alignments. Where discrepancies have arisen between reported sequences and those stored in the database, the original authors have been contacted where possible, and necessary amendments to published sequences have been incorporated into this alignment. Future sequencing may identify errors in this list and the Nomenclature Committee would welcome any evidence that helps to maintain the accuracy of these sequence alignments.

Further help can be found in the help which details both the input options and how the alignments are displayed. Alignments can be downloaded from the download page.

Refine alignment
Alignment query
Reference sequence
Alignment
Mismatches
Numbering
Resolution level
01 : 01 : 01 : 01
Refine New Alignment
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