# STOCKHOLM 1.0
#=GF ID   DpnI_C
#=GF AC   PF17726.8
#=GF DE   Dam-replacing HTH domain
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF SE   Pfam-B_8314 (release 9.0)
#=GF GA   23.00 23.00;
#=GF TC   23.00 24.30;
#=GF NC   22.90 22.30;
#=GF BM   hmmbuild  HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 90746521 -E 1000 --cpu 8 HMM pfamseq
#=GF TP   Domain
#=GF CL   CL0123
#=GF RN   [1]
#=GF RM   11334887
#=GF RT   Evolution and function of the neisserial dam-replacing gene.
#=GF RA   Cantalupo G, Bucci C, Salvatore P, Pagliarulo C, Roberti V,
#=GF RA   Lavitola A, Bruni CB, Alifano P;
#=GF RL   FEBS Lett 2001;495:178-183.
#=GF RN   [2]
#=GF RM   22638584
#=GF RT   Sequence, structure and functional diversity of PD-(D/E)XK
#=GF RT   phosphodiesterase superfamily.
#=GF RA   Steczkiewicz K, Muszewska A, Knizewski L, Rychlewski L, Ginalski
#=GF RA   K;
#=GF RL   Nucleic Acids Res. 2012;40:7016-7045.
#=GF DR   INTERPRO; IPR041368;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   Dam-replacing protein (DRP) is an restriction endonuclease that
#=GF CC   is flanked by pseudo-transposable small repeat elements.  The
#=GF CC   replacement of Dam-methylase by DRP allows phase variation
#=GF CC   through slippage-like mechanisms in several pathogenic isolates
#=GF CC   of Neisseria meningitidis [1]. This domain represents the
#=GF CC   C-terminal HTH domain.
#=GF SQ   7
#=GS D1B377_SULD5/184-252  AC D1B377.1
#=GS B2ULJ8_AKKM8/186-255  AC B2ULJ8.1
#=GS Q73N87_TREDE/186-255  AC Q73N87.1
#=GS E4TET5_CALNY/187-256  AC E4TET5.1
#=GS T2D1_STRR6/184-253    AC P0A460.1
#=GS Q5FAK4_NEIG1/184-252  AC Q5FAK4.1
#=GS E8N2J2_ANATU/186-254  AC E8N2J2.1
D1B377_SULD5/184-252             EQKGWILDIMACIEKLHKKQFTRQELLTFIPYLQTKYPKNNNIEFKISQQLQVLRDKGFLKFTARGNYE.
B2ULJ8_AKKM8/186-255             DSRGWLMDVLACVERLPNKDFTLNEMYLFTEELQAKHPVNTFIQPKIRQQLQRLRDKGYIEFLDRGHYRK
Q73N87_TREDE/186-255             ESRGWLLDIIACIEKINTEEFSLNQIYAFENELKLKHPENNFIKDKIRQQLQYLRDKGFVKFLERGKYKK
E4TET5_CALNY/187-256             ESRGWIIDILNCIDKIDKEIFSLQDIYKFESHLKLKHPNNNFIKDKIRQQLQLLRDKGIIEFLGKGKYRK
T2D1_STRR6/184-253               SSRGWTIEILNCIDKIEGSEFTLEDMYRFESDLKNIFVKNNHIKEKIRQQLQILRDKEIIEFKGRGKYRK
Q5FAK4_NEIG1/184-252             ERKDWLLAVMKCIDQLT.EEFTLSQMYEFENKLSIQFPQNNHIKDKIRQQLQILRDQNMIEFIGRGLYKK
E8N2J2_ANATU/186-254             SQRTWLSLVLHVVDNLP.ANFSLQDIYKYEEKFIQYHPKNKNIRAKIRQQLQIARDLGLIKFLEPGVYQK
#=GC seq_cons                    -pRGWll-llsCI-+lstcpFoLp-hYpFEscLphpaPpNNaI+sKIRQQLQlLRDKGhIcFlsRGpY+K
//