{"metadata":{"accession":"PF12988","entry_id":null,"type":"family","go_terms":null,"source_database":"pfam","member_databases":null,"integrated":"IPR024355","hierarchy":null,"name":{"name":"TraQ conjugal transfer protein","short":"TraQ_transposon"},"description":[{"text":"<p>TraQ is a conjugative transposon lipoprotein. It is a component of the type IV secretion system. TraQ belongs to the immunoglobulin superfamily and shares structural similarity to other proteins involved in pili production for bacterial cell attachment [[cite:PUB00057520]]. It appears to be upregulated in the presence of host or other bacterial species vs when in culture [[cite:PUB00056011],[cite:PUB00056012]].</p>","llm":false,"checked":false,"updated":false}],"wikipedia":null,"literature":{"PUB00057520":{"PMID":22116783,"ISBN":null,"volume":null,"issue":null,"year":2011,"title":"Solution NMR structure of BT_0084, a conjugative transposon lipoprotein from Bacteroides thetaiotamicron.","URL":null,"raw_pages":null,"medline_journal":"Proteins","ISO_journal":"Proteins","authors":["Ramelot TA","Yang Y","Xiao R","Acton TB","Everett JK","Montelione GT","Kennedy MA."],"DOI_URL":null},"PUB00056012":{"PMID":16735464,"ISBN":null,"volume":"103","issue":"23","year":2006,"title":"A hybrid two-component system protein of a prominent human gut symbiont couples glycan sensing in vivo to carbohydrate metabolism.","URL":null,"raw_pages":"8834-9","medline_journal":"Proc Natl Acad Sci U S A","ISO_journal":"Proc. Natl. Acad. Sci. U.S.A.","authors":["Sonnenburg ED","Sonnenburg JL","Manchester JK","Hansen EE","Chiang HC","Gordon JI."],"DOI_URL":"http://dx.doi.org/10.1073/pnas.0603249103"},"PUB00056011":{"PMID":15790854,"ISBN":null,"volume":"307","issue":"5717","year":2005,"title":"Glycan foraging in vivo by an intestine-adapted bacterial symbiont.","URL":null,"raw_pages":"1955-9","medline_journal":"Science","ISO_journal":"Science","authors":["Sonnenburg JL","Xu J","Leip DD","Chen CH","Westover BP","Weatherford J","Buhler JD","Gordon JI."],"DOI_URL":"http://dx.doi.org/10.1126/science.1109051"}},"set_info":{"accession":"CL0159","name":"E-set"},"overlaps_with":null,"counters":{"subfamilies":0,"domain_architectures":4,"interactions":0,"matches":765,"pathways":0,"proteins":763,"proteomes":408,"sets":1,"structural_models":{"alphafold":530},"structures":3,"taxa":586},"entry_annotations":{"hmm":0,"logo":0,"alignment:seed":12,"alignment:full":365},"cross_references":{},"is_llm":false,"is_reviewed_llm":false,"is_updated_llm":false,"representative_structure":{"accession":"4lba","name":"Crystal structure of a conjugative transposon lipoprotein (BACEGG_03088) from Bacteroides eggerthii DSM 20697 at 1.70 A resolution"}}}