{"metadata":{"accession":"PF08906","entry_id":null,"type":"domain","go_terms":null,"source_database":"pfam","member_databases":null,"integrated":"IPR015002","hierarchy":null,"name":{"name":"T6SS immunity protein Tdi1, C-terminal","short":"T6SS_Tdi1_C"},"description":[{"text":"<p>This domain is found at the C-terminal region of the type VI secretion system (T6SS) immunity protein Tdi1 from Agrobacterium tumefaciens (Atu4351, [swissprot:Q7CUQ2]) and similar bacterial proteins Tdi1 is organised into a N-terminal GAD-related domain ([pfam:PF08887]) and a C-terminal domain likely to exist as an insertion in the GAD-like domain. This domain shows a two-stranded antiparallel beta-sheet and four helices. A positive groove that extends to both domains may be associated with nucleotide binding [[cite:PUB00100858]].</p>","llm":false,"checked":false,"updated":false}],"wikipedia":null,"literature":{"PUB00100858":{"PMID":30839288,"ISBN":null,"volume":"75","issue":"Pt 3","year":2019,"title":"Crystal structure of the type VI immunity protein Tdi1 (Atu4351) from Agrobacterium tumefaciens.","URL":null,"raw_pages":"153-158","medline_journal":"Acta Crystallogr F Struct Biol Commun","ISO_journal":"Acta Crystallogr F Struct Biol Commun","authors":["Shi L","Gao Z","Zhang T","Zhang H","Dong Y."],"DOI_URL":null}},"set_info":null,"overlaps_with":null,"counters":{"subfamilies":0,"domain_architectures":5,"interactions":0,"matches":1235,"pathways":0,"proteins":1234,"proteomes":940,"sets":0,"structural_models":{"alphafold":705},"structures":3,"taxa":1734},"entry_annotations":{"hmm":0,"logo":0,"alignment:seed":17,"alignment:full":456},"cross_references":{},"is_llm":false,"is_reviewed_llm":false,"is_updated_llm":false,"representative_structure":null}}