{"metadata":{"accession":"PF08011","entry_id":null,"type":"family","go_terms":null,"source_database":"pfam","member_databases":null,"integrated":"IPR012547","hierarchy":null,"name":{"name":"PD-(D/E)XK nuclease superfamily","short":"PDDEXK_9"},"description":[{"text":"<p>This family contains many hypothetical bacterial proteins.  It has been identified as a member of the PD-(D/E)XK nuclease superfamily through transitive meta profile searches [[cite:PUB00044133]]. DUF1703 has the predicted secondary structure pattern of the restriction endonuclease-like fold core and contains an additional beta-strand at the C-terminus [[cite:PUB00044133]].</p>","llm":false,"checked":false,"updated":false}],"wikipedia":null,"literature":{"PUB00044133":{"PMID":17584917,"ISBN":null,"volume":"7","issue":null,"year":2007,"title":"Realm of PD-(D/E)XK nuclease superfamily revisited: detection of novel families with modified transitive meta profile searches.","URL":null,"raw_pages":"40","medline_journal":"BMC Struct Biol","ISO_journal":"BMC Struct. Biol.","authors":["Knizewski L","Kinch LN","Grishin NV","Rychlewski L","Ginalski K."],"DOI_URL":"http://dx.doi.org/10.1186/1472-6807-7-40"}},"set_info":{"accession":"CL0236","name":"PDDEXK"},"overlaps_with":null,"counters":{"subfamilies":0,"domain_architectures":32,"interactions":0,"matches":3766,"pathways":0,"proteins":3764,"proteomes":803,"sets":1,"structural_models":{"alphafold":2739},"structures":0,"taxa":1804},"entry_annotations":{"hmm":0,"logo":0,"alignment:seed":34,"alignment:full":2778},"cross_references":{},"is_llm":false,"is_reviewed_llm":false,"is_updated_llm":false,"representative_structure":null}}