{"metadata":{"accession":"PF06568","entry_id":null,"type":"domain","go_terms":null,"source_database":"pfam","member_databases":null,"integrated":"IPR009506","hierarchy":null,"name":{"name":"YjiS-like domain","short":"YjiS-like"},"description":[{"text":"<p>This arginine rich domain is found at the C-terminal end of YjiS from Salmonella Typhimurium and similar short sequences from proteobacteria. YjiS, an inner membrane-associated small protein, acts as as a suppressor of flagella production, leading to pathogen escape from infected host cells [[cite:PUB00160930]]. In the plant pathogen Agrobacterium tumefaciens, some small proteins that contain this domain are involved in nutrient acquisition and central carbon metabolism [[cite:PUB00160928]]. CcaF1 from Rhodobacter sphaeroides is an RNA binding protein that has a role in the oxidative stress defence [[cite:PUB00160929]]. In some uncharacterised proteins, this domain, previously known as DUF1127, covers the whole sequence.</p>","llm":false,"checked":false,"updated":false}],"wikipedia":null,"literature":{"PUB00160932":{"PMID":37298460,"ISBN":null,"volume":"24","issue":"11","year":2023,"title":"The Small RNA-Binding Protein CcaF1 Promotes Formation of Photosynthetic Complexes in <i>Rhodobacter sphaeroides</i>.","URL":null,"raw_pages":"9515","medline_journal":"Int J Mol Sci","ISO_journal":"Int J Mol Sci","authors":["Grutzner J","Borner J","Jager A","Klug G."],"DOI_URL":"https://doi.org/10.3390/ijms24119515"},"PUB00160930":{"PMID":39790481,"ISBN":null,"volume":"6","issue":null,"year":2025,"title":"Functional characterization of the DUF1127-containing small protein YjiS of &lt;i&gt;Salmonella&lt;/i&gt; Typhimurium.","URL":null,"raw_pages":"uqae026","medline_journal":"Microlife","ISO_journal":"Microlife","authors":["Venturini E","Maaß S","Bischler T","Becher D","Vogel J","Westermann AJ."],"DOI_URL":"https://doi.org/10.1093/femsml/uqae026"},"PUB00160928":{"PMID":33093235,"ISBN":null,"volume":"202","issue":"22","year":2020,"title":"Arginine-Rich Small Proteins with a Domain of Unknown Function, DUF1127, Play a Role in Phosphate and Carbon Metabolism of Agrobacterium tumefaciens.","URL":null,"raw_pages":"e00309-20","medline_journal":"J Bacteriol","ISO_journal":"J Bacteriol","authors":["Kraus A","Weskamp M","Zierles J","Balzer M","Busch R","Eisfeld J","Lambertz J","Nowaczyk MM","Narberhaus F."],"DOI_URL":"https://doi.org/10.1128/JB.00309-20"},"PUB00160929":{"PMID":33706375,"ISBN":null,"volume":"49","issue":"6","year":2021,"title":"The small DUF1127 protein CcaF1 from Rhodobacter sphaeroides is an RNA-binding protein involved in sRNA maturation and RNA turnover.","URL":null,"raw_pages":"3003-3019","medline_journal":"Nucleic Acids Res","ISO_journal":"Nucleic Acids Res","authors":["Grutzner J","Billenkamp F","Spanka DT","Rick T","Monzon V","Forstner KU","Klug G."],"DOI_URL":"https://doi.org/10.1093/nar/gkab146"}},"set_info":null,"overlaps_with":null,"counters":{"subfamilies":0,"domain_architectures":9,"interactions":0,"matches":9266,"pathways":0,"proteins":9243,"proteomes":2798,"sets":0,"structural_models":{"alphafold":5914},"structures":0,"taxa":3798},"entry_annotations":{"hmm":0,"logo":0,"alignment:seed":85,"alignment:full":4119},"cross_references":{},"is_llm":false,"is_reviewed_llm":false,"is_updated_llm":false,"representative_structure":null}}